Rh6DG204000

Pleiotropic drug resistance protein 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000245
Physical Location & Seq
Reverse (-)
36249134 .. 36270343
21210 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG204000.1

Sequence Viewer

Length: 1017 bp
ATGGTGAAGAGGTTACACCATCTGATGGTAAGAGGAGACTCTGTAGGTGGGAATGCACATCAAGTACTGGATGGAGCTGTTTGTGAGAACCAGGAGCAGATTCCTGTGACTAAGGTTACGCACGAGAAAGTTGAGAAACAGGTTGATGACACTGCTGTTATGGAATGTGGGACTGTGGTGTCCAGACTTGCAGCTCACACGGTGCAGCAAGCACAGGAAGGACGGGATGGGGATACTCGAGTGGATAAAAGGGTCTTAAATCTTACTCTTGGAGAGTTGGAGTCTTGGGGAGAGCGGAGGCCAGAACTCAGGAAGACGAGCAGTCGGAGTAGACAGGAGGAAGGAGGAAATGCTTCTGCTGTGCAATCTGTGGTTGCGATTGAGAGAACAGTTTTCTACCGAGAAAGAGCAGCAGGAATGTATTCAGAGTTGCCTTATGCATTTGCTCAGGTGGCCATTGAGACGATTTATGTTGCTATACAAACCATCATTTATTCCCTTCTTTTATTTACCATGATCGGCTACGAATTTAAAGTTGAGAAATTTTTGTATTTCTACTACTTTATATTCATGTGTTTTACATACTTCTCAATGTATGGAATGATGGTGGTTGCCCCAACTCCTGGCCATCAAATCGCTGCAATTGTCATGGGCTTCTTCATGAGTTTCTTGAATTTGTTCTCCGGTTTCCTCGTCCCCAAACCGCTCGGAGAGTCTCCTCCTTACTCTCTTGCTCTCTCTGCTAGGTCTGCTTCTAAGCTTCTCTCTCAAGGGAGAAGTGTTAGTAGATTTAGCAATGCTGCAGTGGGAGCTGGGAGCTGGGAGCTCATTGGTGACTGTAGAAAGTATGCTGGGATGACCGCCTATGCAGGCTTCAATGAAGTTTGTTCTCCTAAGAAAGGAGAATATGTCTTCATTTCAGCAGCATCAGGTGCTGCTGGTCAGCTAGTTGGACAATTAGCAAAATTGTTGGGTTATTATGTTGTTGGAAGTGCTGGAAGTAAAGAAAAGGTGTAA

Protein Analysis

338

Amino Acids

37.14

Weight (kDa)

8.46

Isoelectric Point (pI)

36.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC2_membrane PF01061 118 - 235 1.8e-26 ABC-2 type transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000245)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66950 AT2G36380
fragaria_vesca FvH4_3g29700 FvH4_3g29700 FvH4_3g29700 FvH4_3g29700 FvH4_3g29710 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29760 FvH4_3g29781 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150
malus_domestica MD02G1254900.v1.1 MD03G1119400.v1.1 MD03G1136800.v1.1 MD03G1137000.v1.1 MD04G1187500.v1.1 MD08G1208900.v1.1 MD08G1209000.v1.1 MD11G1159000.v1.1 MD11G1159100.v1.1 MD11G1159200.v1.1 MD12G1020800.v1.1 MD12G1021000.v1.1 MD14G1017900.v1.1 MD14G1018100.v1.1
prunus_persica Prupe.2G084300_v2.0.a1 Prupe.2G084300_v2.0.a1 Prupe.6G121200_v2.0.a1 Prupe.6G121200_v2.0.a1 Prupe.6G121500_v2.0.a1 Prupe.6G121800_v2.0.a1 Prupe.6G121900_v2.0.a1 Prupe.6G122100_v2.0.a1 Prupe.7G115200_v2.0.a1 Prupe.7G115200_v2.0.a1
pyrus_communis pycom02g21460 pycom03g09270 pycom03g09290 pycom07g05130 pycom08g18050 pycom11g12950 pycom11g12960 pycom11g12970 pycom12g01950 pycom12g01980 pycom14g01620 pycom14g01710 pycom14g01720 pycom16g12190
rosa_chinensis RchiOBHm_Chr1g0340571 RchiOBHm_Chr2g0107751 RchiOBHm_Chr3g0472451 RchiOBHm_Chr5g0055051 RchiOBHm_Chr5g0055091 RchiOBHm_Chr5g0055111 RchiOBHm_Chr5g0055121 RchiOBHm_Chr5g0055131 RchiOBHm_Chr5g0062371 RchiOBHm_Chr6g0265121 RchiOBHm_Chr6g0275771 RchiOBHm_Chr7g0187231
rosa_laevigata RLG00000006319 RLG00000013820 RLG00000024078 RLG00000034960 RLG00000034963 RLG00000034965 RLG00000034966 RLG00000034968 RLG00000034970
rosa_multiflora Rmu_co8358859.1_g000001 Rmu_co8422375.1_g000001 Rmu_co8427767.1_g000001 Rmu_co8474941.1_g000001 Rmu_sc0000925.1_g000009 Rmu_sc0001694.1_g000015 Rmu_sc0001694.1_g000022 Rmu_sc0001694.1_g000024 Rmu_sc0001694.1_g000030 Rmu_sc0003993.1_g000001 Rmu_sc0010632.1_g000001 Rmu_sc0035175.1_g000001
rosa_roxburghii Rroxscaffold_1G00025230 Rroxscaffold_1G00025240 Rroxscaffold_1G00025300 Rroxscaffold_1G00025320 Rroxscaffold_1G00025330 Rroxscaffold_1G00025360 Rroxscaffold_1G00025440 Rroxscaffold_1G00033590 Rroxscaffold_6G00408900
rosa_rugosa Rorug03G0125500.1 Rorug03G0125600.1 Rorug05G0290600 Rorug05G0291100 Rorug05G0291200 Rorug05G0291300
rosa_samantha Rh1CG035400 Rh1CG243200 Rh2DG410600 Rh3AG177500 Rh3CG193800 Rh3CG200900 Rh3DG171700 Rh5AG043000 Rh5AG360500 Rh5AG360900 Rh5AG361000 Rh5AG361300 Rh5AG441100 Rh5CG393700 Rh5CG393900 Rh5CG394200 Rh5DG247300 Rh5DG385200 Rh5DG385500 Rh5DG385800 Rh6BG272200 Rh6DG204000 Rh7AG084700 Rh7AG178300
rosa_wichuraiana Rw0G022120 Rw3G016410 Rw5G033910 Rw5G033920 Rw5G033940 Rw5G033960 Rw5G033970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 178
AccB7I CCANNNNNTGG 2 cut(s) 25, 623
AccBSI CCGCTC 2 cut(s) 295, 706
AccI GTMKAC 1 cut(s) 331
AciI CCGC 3 cut(s) 295, 704, 861
AcoI YGGCCR 2 cut(s) 453, 625
AcsI RAATTY 3 cut(s) 527, 542, 673
AdeI CACNNNGTG 1 cut(s) 202
AfaI GTAC 1 cut(s) 66
AfiI CCNNNNNNNGG 3 cut(s) 25, 623, 899
AgsI TTSAA 2 cut(s) 673, 877
AhdI GACNNNNNGTC 1 cut(s) 321
AjnI CCWGG 2 cut(s) 90, 622
AluBI AGCT 7 cut(s) 77, 194, 760, 812, 819, 826, 946
AluI AGCT 7 cut(s) 77, 194, 760, 812, 819, 826, 946
Alw21I GWGCWC 1 cut(s) 828
Alw26I GTCTC 3 cut(s) 30, 455, 720
AlwNI CAGNNNCTG 1 cut(s) 935
Ama87I CYCGRG 1 cut(s) 237
AoxI GGCC 3 cut(s) 299, 453, 625
ApeKI GCWGC 7 cut(s) 191, 205, 410, 638, 800, 923, 935
ApoI RAATTY 3 cut(s) 527, 542, 673
Asp700I GAANNNNTTC 3 cut(s) 352, 421, 677
AsuHPI GGTGA 2 cut(s) 16, 845
AvaI CYCGRG 1 cut(s) 237
BaeI ACNNNNGTAYC 2 cut(s) 225, 258
BalI TGGCCA 2 cut(s) 455, 627
BanII GRGCYC 1 cut(s) 828
BauI CACGAG 1 cut(s) 122
BbsI GAAGAC 2 cut(s) 320, 904
Bbv12I GWGCWC 1 cut(s) 828
BbvI GCAGC 7 cut(s) 203, 217, 422, 625, 787, 922, 935
BccI CCATC 7 cut(s) 19, 27, 65, 221, 494, 598, 636
BciT130I CCWGG 2 cut(s) 92, 624
BciVI GTATCC 1 cut(s) 226
BcoDI GTCTC 3 cut(s) 30, 455, 720
BfaI CTAG 2 cut(s) 744, 947
BfmI CTRYAG 3 cut(s) 42, 801, 838
BfuI GTATCC 1 cut(s) 226
BisI GCNGC 7 cut(s) 192, 206, 411, 639, 801, 924, 936
BlsI GCNGC 7 cut(s) 193, 207, 412, 640, 802, 925, 937
BmcAI AGTACT 1 cut(s) 66
Bme1390I CCNGG 2 cut(s) 92, 624
BmeRI GACNNNNNGTC 1 cut(s) 321
BmeT110I CYCGRG 1 cut(s) 237
BmrFI CCNGG 2 cut(s) 92, 624
BmsI GCATC 1 cut(s) 935
BpiI GAAGAC 2 cut(s) 320, 904
Bpu10I CCTNAGC 1 cut(s) 447
BpuEI CTTGAG 1 cut(s) 753
BsaWI WCCGGW 1 cut(s) 683
BsaXI ACNNNNNCTCC 4 cut(s) 27, 57, 894, 924
Bsc4I CCNNNNNNNGG 3 cut(s) 25, 623, 899
Bse1I ACTGG 1 cut(s) 72
Bse3DI GCAATG 1 cut(s) 802
BseBI CCWGG 2 cut(s) 92, 624
BseGI GGATG 3 cut(s) 76, 232, 861
BseLI CCNNNNNNNGG 3 cut(s) 25, 623, 899
BseMI GCAATG 1 cut(s) 802
BseMII CTCAG 2 cut(s) 322, 461
BseNI ACTGG 1 cut(s) 72
BseRI GAGGAG 2 cut(s) 48, 708
BseXI GCAGC 7 cut(s) 203, 217, 422, 625, 787, 922, 935
BseYI CCCAGC 3 cut(s) 812, 819, 851
BsgI GTGCAG 1 cut(s) 224
BshFI GGCC 3 cut(s) 301, 455, 627
BsiHKAI GWGCWC 1 cut(s) 828
BsiHKCI CYCGRG 1 cut(s) 237
BsiSI CCGG 1 cut(s) 684
BslFI GGGAC 2 cut(s) 184, 680
BslI CCNNNNNNNGG 3 cut(s) 25, 623, 899
BsmAI GTCTC 3 cut(s) 30, 455, 720
BsmBI CGTCTC 1 cut(s) 455
BsmFI GGGAC 2 cut(s) 184, 680
BsmI GAATGC 1 cut(s) 58
BsnI GGCC 3 cut(s) 301, 455, 627
BsoBI CYCGRG 1 cut(s) 237
Bsp1286I GDGCHC 1 cut(s) 828
Bsp143I GATC 1 cut(s) 516
BspACI CCGC 3 cut(s) 295, 704, 861
BspANI GGCC 3 cut(s) 301, 455, 627
BspCNI CTCAG 2 cut(s) 321, 460
BspHI TCATGA 1 cut(s) 660
BspMAI CTGCAG 1 cut(s) 805
BsrBI CCGCTC 2 cut(s) 295, 706
BsrDI GCAATG 1 cut(s) 802
BsrI ACTGG 1 cut(s) 72
BssMI GATC 1 cut(s) 516
BssSI CACGAG 1 cut(s) 122
Bst2BI CACGAG 1 cut(s) 122
Bst2UI CCWGG 2 cut(s) 92, 624
Bst4CI ACNGT 4 cut(s) 175, 202, 391, 839
Bst6I CTCTTC 1 cut(s) 2
BstAPI GCANNNNNTGC 1 cut(s) 932
BstC8I GCNNGC 2 cut(s) 210, 871
BstDEI CTNAG 5 cut(s) 111, 308, 447, 756, 894
BstENI CCTNNNNNAGG 1 cut(s) 897
BstF5I GGATG 3 cut(s) 76, 232, 861
BstKTI GATC 1 cut(s) 519
BstMAI GTCTC 3 cut(s) 30, 455, 720
BstMBI GATC 1 cut(s) 516
BstMWI GCNNNNNNNGC 5 cut(s) 452, 740, 749, 809, 932
BstNI CCWGG 2 cut(s) 92, 624
BstSCI CCNGG 2 cut(s) 90, 622
BstSFI CTRYAG 3 cut(s) 42, 801, 838
BstV1I GCAGC 7 cut(s) 203, 217, 422, 625, 787, 922, 935
BstV2I GAAGAC 2 cut(s) 320, 904
BsuI GTATCC 1 cut(s) 226
BsuRI GGCC 3 cut(s) 301, 455, 627
BtsCI GGATG 3 cut(s) 76, 232, 861
BtsI GCAGTG 2 cut(s) 150, 810
BtsIMutI CAGTG 2 cut(s) 150, 810
Cac8I GCNNGC 2 cut(s) 210, 871
CaiI CAGNNNCTG 1 cut(s) 935
CciI TCATGA 1 cut(s) 660
Csp6I GTAC 1 cut(s) 65
CviAII CATG 4 cut(s) 514, 571, 649, 661
CviQI GTAC 1 cut(s) 65
DdeI CTNAG 5 cut(s) 111, 308, 447, 756, 894
DpnI GATC 1 cut(s) 518
DpnII GATC 1 cut(s) 516
DraI TTTAAA 1 cut(s) 532
DraIII CACNNNGTG 1 cut(s) 202
DrdI GACNNNNNNGTC 1 cut(s) 178
DriI GACNNNNNGTC 1 cut(s) 321
DseDI GACNNNNNNGTC 1 cut(s) 178
EaeI YGGCCR 2 cut(s) 453, 625
Eam1104I CTCTTC 1 cut(s) 2
Eam1105I GACNNNNNGTC 1 cut(s) 321
EarI CTCTTC 1 cut(s) 2
Ecl136II GAGCTC 1 cut(s) 826
Eco24I GRGCYC 1 cut(s) 828
Eco53kI GAGCTC 1 cut(s) 826
Eco88I CYCGRG 1 cut(s) 237
EcoICRI GAGCTC 1 cut(s) 826
EcoNI CCTNNNNNAGG 1 cut(s) 897
EcoRII CCWGG 2 cut(s) 90, 622
EcoT22I ATGCAT 1 cut(s) 442
EcoT38I GRGCYC 1 cut(s) 828
Esp3I CGTCTC 1 cut(s) 455
FaeI CATG 4 cut(s) 517, 574, 652, 664
FaqI GGGAC 2 cut(s) 184, 680
FatI CATG 4 cut(s) 513, 570, 648, 660
FblI GTMKAC 1 cut(s) 331
Fnu4HI GCNGC 7 cut(s) 192, 206, 411, 639, 801, 924, 936
FokI GGATG 3 cut(s) 83, 239, 868
FriOI GRGCYC 1 cut(s) 828
Fsp4HI GCNGC 7 cut(s) 192, 206, 411, 639, 801, 924, 936
FspBI CTAG 2 cut(s) 744, 947
GluI GCNGC 7 cut(s) 192, 206, 411, 639, 801, 924, 936
GsaI CCCAGC 3 cut(s) 816, 823, 855
HaeIII GGCC 3 cut(s) 301, 455, 627
HapII CCGG 1 cut(s) 684
Hin1II CATG 4 cut(s) 517, 574, 652, 664
HindIII AAGCTT 1 cut(s) 758
HinfI GANTC 4 cut(s) 38, 100, 281, 713
HpaII CCGG 1 cut(s) 684
HphI GGTGA 2 cut(s) 16, 845
Hpy166II GTNNAC 1 cut(s) 332
Hpy188I TCNGA 4 cut(s) 24, 327, 427, 710
Hpy188III TCNNGA 4 cut(s) 183, 310, 661, 670
Hpy8I GTNNAC 1 cut(s) 332
HpyAV CCTTC 3 cut(s) 212, 335, 509
HpyCH4III ACNGT 4 cut(s) 175, 202, 391, 839
HpyCH4V TGCA 8 cut(s) 56, 191, 205, 364, 440, 641, 803, 869
HpyF10VI GCNNNNNNNGC 5 cut(s) 452, 740, 749, 809, 932
HpyF3I CTNAG 5 cut(s) 111, 308, 447, 756, 894
Hsp92II CATG 4 cut(s) 517, 574, 652, 664
Kzo9I GATC 1 cut(s) 516
LmnI GCTCC 5 cut(s) 74, 94, 809, 816, 823
Lsp1109I GCAGC 7 cut(s) 203, 217, 422, 625, 787, 922, 935
LweI GCATC 1 cut(s) 935
MaeI CTAG 2 cut(s) 744, 947
MaeIII GTNAC 4 cut(s) 12, 106, 115, 833
MalI GATC 1 cut(s) 518
MbiI CCGCTC 2 cut(s) 295, 706
MboI GATC 1 cut(s) 516
MboII GAAGA 4 cut(s) 19, 325, 649, 904
MfeI CAATTG 1 cut(s) 642
MhlI GDGCHC 1 cut(s) 828
MlsI TGGCCA 2 cut(s) 455, 627
MluCI AATT 6 cut(s) 527, 542, 642, 673, 956, 965
MluNI TGGCCA 2 cut(s) 455, 627
MlyI GAGTC 3 cut(s) 32, 290, 722
MmeI TCCRAC 4 cut(s) 258, 305, 931, 967
MnlI CCTC 7 cut(s) 3, 26, 291, 331, 338, 701, 729
Mox20I TGGCCA 2 cut(s) 455, 627
Mph1103I ATGCAT 1 cut(s) 442
MroXI GAANNNNTTC 3 cut(s) 352, 421, 677
MscI TGGCCA 2 cut(s) 455, 627
MseI TTAA 2 cut(s) 257, 531
Msp20I TGGCCA 2 cut(s) 455, 627
MspI CCGG 1 cut(s) 684
MspR9I CCNGG 2 cut(s) 92, 624
MunI CAATTG 1 cut(s) 642
Mva1269I GAATGC 1 cut(s) 58
MvaI CCWGG 2 cut(s) 92, 624
MwoI GCNNNNNNNGC 5 cut(s) 452, 740, 749, 809, 932
NdeII GATC 1 cut(s) 516
NlaIII CATG 4 cut(s) 517, 574, 652, 664
NmuCI GTSAC 2 cut(s) 106, 833
NsiI ATGCAT 1 cut(s) 442
PaeR7I CTCGAG 1 cut(s) 237
PagI TCATGA 1 cut(s) 660
PctI GAATGC 1 cut(s) 58
PdmI GAANNNNTTC 3 cut(s) 352, 421, 677
PfeI GAWTC 1 cut(s) 100
PflMI CCANNNNNTGG 2 cut(s) 25, 623
PkrI GCNGC 7 cut(s) 193, 207, 412, 640, 802, 925, 937
PleI GAGTC 3 cut(s) 32, 289, 721
PpsI GAGTC 3 cut(s) 32, 289, 721
Psp124BI GAGCTC 1 cut(s) 828
Psp6I CCWGG 2 cut(s) 90, 622
PspFI CCCAGC 3 cut(s) 812, 819, 851
PspGI CCWGG 2 cut(s) 90, 622
PspXI VCTCGAGB 1 cut(s) 237
PstI CTGCAG 1 cut(s) 805
PstNI CAGNNNCTG 1 cut(s) 935
RsaI GTAC 1 cut(s) 66
RsaNI GTAC 1 cut(s) 65
SacI GAGCTC 1 cut(s) 828
SaqAI TTAA 2 cut(s) 257, 531
SatI GCNGC 7 cut(s) 192, 206, 411, 639, 801, 924, 936
Sau3AI GATC 1 cut(s) 516
ScaI AGTACT 1 cut(s) 66
SchI GAGTC 3 cut(s) 32, 290, 722
ScrFI CCNGG 2 cut(s) 92, 624
SduI GDGCHC 1 cut(s) 828
SfaNI GCATC 1 cut(s) 935
SfcI CTRYAG 3 cut(s) 42, 801, 838
Sfr274I CTCGAG 1 cut(s) 237
SlaI CTCGAG 1 cut(s) 237
SmlI CTYRAG 2 cut(s) 237, 768
SmoI CTYRAG 2 cut(s) 237, 768
Sse9I AATT 6 cut(s) 527, 542, 642, 673, 956, 965
SsiI CCGC 3 cut(s) 295, 704, 861
SspMI CTAG 2 cut(s) 744, 947
SstI GAGCTC 1 cut(s) 828
StyD4I CCNGG 2 cut(s) 90, 622
TaaI ACNGT 4 cut(s) 175, 202, 391, 839
TaqI TCGA 1 cut(s) 238
TasI AATT 6 cut(s) 527, 542, 642, 673, 956, 965
TatI WGTACW 1 cut(s) 64
TfiI GAWTC 1 cut(s) 100
Tru1I TTAA 2 cut(s) 257, 531
Tru9I TTAA 2 cut(s) 257, 531
TscAI CASTG 2 cut(s) 157, 810
TseFI GTSAC 2 cut(s) 106, 833
TseI GCWGC 7 cut(s) 191, 205, 410, 638, 800, 923, 935
Tsp45I GTSAC 2 cut(s) 106, 833
TspDTI ATGAA 4 cut(s) 559, 649, 894, 904
TspRI CASTG 2 cut(s) 157, 810
Van91I CCANNNNNTGG 2 cut(s) 25, 623
XagI CCTNNNNNAGG 1 cut(s) 897
XapI RAATTY 3 cut(s) 527, 542, 673
XhoI CTCGAG 1 cut(s) 237
XmiI GTMKAC 1 cut(s) 331
XmnI GAANNNNTTC 3 cut(s) 352, 421, 677
XspI CTAG 2 cut(s) 744, 947
ZrmI AGTACT 1 cut(s) 66
Zsp2I ATGCAT 1 cut(s) 442
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.