MD12G1020800.v1.1
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
Physical Location & Seq
Reverse (-)
2059381 .. 2066639
7259 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1020800.v1.1.491

Sequence Viewer

Length: 4362 bp
ATGGCGGCTGCTTTGGTGAGCGACGATCTGGCCCAGTCGACCAGCAGCCGGAGAAGCTGGGGGTCGGGAAGCAAGAGGAGCTGGGCGTCCACAAGTTTCGGGGAAGTGTGGCAGGCGCCGCCGGATGTGTTCAACAGGAGCGGGCGGCAGGATGAGGATGAGGAGGAGGAACTGCGGTGGGCGGCGATCGAGCGGCTGCCGACGTATGACAGGTTGAAAAGAGGGATGCTGAGGAAGGTGCTGGACAATGGGAGGGTGGTGACTGATGAGGTGGACGTGACGAAGCTGGGAATGCAGGACAGGAAGCAGTTGATGGAGAGTATATTGAAGGTTGTGGAAGACGATAACGAAAGTTTCTTGAGAAGACTTAGGGACAGAACTGATAGTGTGGGGATCGAAATTCCGAAGATTGAAGTCCGATATGAGAATTTGTCTATGGATGGGGATGTGTATGTTGGGAGCAGAGCACTGCCTACTCTACTTAATGTTACCTTGAACACCATTGAGAGTGTTCTGAGATTAATTAAGCTTGCTCCATCAAAAAAGAGAAGGATCCAGATACTTAAGGATGTTAGTGGAATAGTCAGACCTTCCAGGATGACCCTACTTTTGGGTCCTCCAGGTGCAGGCAAAACAACCTTGTTACTAGCACTTGCAGGAAAGCTTGACGATGATCTAAGAGTTTCTGGGAAAGTCACATATTGTGGCCATGAACTGCATGAGTTTGTTCCTAGAAGAACATGTGCTTACATTAGCCAGCATGATCTACACTGTGGAGAAATGACAGTGAGAGAGACGTTGGATTTCTCAGGACGTTGTTTGGGTGTCGGAGCTCGATACCAAATGCTGGTTGAACTCTCAAGAAGAGAGAAAGAAGCCGGAATCAAGCCGGACCCCGAGATTGATGCATTCATGAAAGCCACCTCAGTCTCAGGCCAGAAGACTAGTTTGGTCACAGATTATGTTCTCAAGATACTTGGATTGGATACCTGTGCTGATATCTTGGTTGGTGATGATATGAGGAGGGGTATTTCCGGTGGCCAGAAAAAGCGCTTGACCACCGGGGAGATGTTGGTAGGACCAGCAAAGGTTCTTCTGATGGATGAAATATCAACAGGGTTAGACAGTTCCACAACTTTTCAGATATGCAGATACATGAGGCAATTGGTTCACATAATGGATGTTACCATGGTCATCTCTCTTCTGCAGCCTGCGCCGGAGACATTTGAGCTCTTTGATGACCTAATCCTGCTTTCGGAAGGGCAGATCGTGTACCAAGGTCCGCGCGAGAGTGTCCTCGAGTTCTTCGAACGCATGGGATTCAAGTGCCCAGAGAGGAAAGGAGTTGTTGATTTTTTGCAAGAAGTGACATCCAGGAAGGACCAAGAGCAGTATTGGTTCGAAAAAAGCCAACCTTACAGATATATTTCGGTTCCTGAGTTCGTGGAGGCCTTCAACTCTTTTCGTATTGGCCAACAGCTTGCAGCTGATCTCGGGGTTCCTTACGAGAAGTCCAGAGCTCATCCAGCTGCATTGGTCACAAGGAAGTATGGCATTTCAAACTGGGAATTGTTCAAGGCATGTTTTTCGAGGGAGTGGCTGCTAATGAAGCGCAATTCGTTCGTGTACATATTTAAGACCACGCAGATAACGATCATGTCATTGATCGCCTTGACTGTGTTCCTTAGAACAGAAATGCCTGTGGGGACAGTACAAGATGGAGGGAAATTTTTCGGAGCACTGTTCTTCAGTCTGATCAATGTGATGTTTAATGGTATGGCAGAACTGGCAATGACTGTTTTCAGACTTCCTGTTTTCTATAAGCAGAGGGATTTCTTGTTTTATCCTGCGTGGGCTTTCGGATTACCAATTTGGGTCCTCAGGATCCCGCTTTCGTTCATGGAATCTGCGATTTGGATCATTCTTACCTATTACAGCATTGGATTTGCTCCAGCTGCTAGCAGATTTTTCAAACAGTTCTTGGCATTCTTTGGCATACATCAGATGGCTCTATCCCTCTTTCGGTTCATTGCTGCACTTGGAAGAACACAAGTTGTTGCTACCACGCTTGGTGTTTTTACCTTGCTAATGGTATTCGTTCTGGGAGGATTTATTGTTTCCAAAAACGACCTTGAGCCTTGGGTGCTATGGGGCTACTACATTTTCCCTATGATGTATGGACAGAATGCGATCGTCATGAATGAATTCCTTGACAAAAGATGGAGCGCACCAAATACAGATCCAAGAATTAACGCAACTACGGTCGGGGAAGTCCTCCTCAAGTCTAGAGGATTCTTCACAGATGAATACTGGTTTTGGATATGTATTGGAGCACTATTTGGTTTTTCTCTCGTCTTCAACATCTTGTTCATTGCAGCATTGACTTATCTGAACCCTCTCGGGGATGCAAAAGCTGTCGTGTCTGATGAAGAAAGTGAAGGAAAGAGAAAGAAGTCGTTAAGTGAAGAAATGACAGTGAAAAGTTCTTCAGAAATGATTGGTGATTCGGATCATGCACCAAAGAAAGGAATGGCTTTGCCCTTCCAACCCCTTTCGCTTGCGTTTAACCATGTGAACTACTTCGTGGATATGCCCTCTGAAATGAAGACTCATGGAGTTGAGGAAGATCGCCTTCAACTGCTACGAGATGTATGTGGTGCTTTTAGACCCGGAATATTGACAGCCCTTGTAGGTGTTAGTGGTGCTGGAAAGACAACTCTTATGGACGTCTTGGCAGGTAGAAAGACTGGTGGATATATCGAAGGGACCATTAACATATCTGGTTATCCAAAGAAGCAAGAAACATTTGCTCGTGTCAGCGGTTATTGTGAACAGAATGACATCCATTCCCCACATGTTACTGTCTATGAATCTCTCCTGTATTCAGCCTGGCTCCGTCTTGCTTCTGATGTAAATACACAAACACGAAAGATGTTTGTTGAAGAAGTCATGGCTTTGGTTGAGCTTAATCCACTAAGGGATTCTCTTGTTGGCCTCCCGGGAATAGACGGTCTTTCAACAGAACAAAGGAAGAGACTAACCATAGCTGTGGAGCTGGTTGTTAATCCCTCTATCATTTTTATGGATGAACCGACAACTGGTCTCGATGCCAGGGCTGCTGCTATCGTCATGCGTACTGTGAGAAACACGGTGGACACAGGCAGAACTGTTGTCTGCACAATTCACCAGCCAAGCATAGATATTTTTGAAGCTTTCGACGAGTTACTTCTGATGAAACGTGGAGGGCAAGTCATTTATGGTGGACCCCTCGGCCGCCATTCTCACAAGCTTGTAGAGCATTTTGAAGCCATCCATGGAGTGACCAAGATCAAGGATGGTTGTAATCCTGCTACATGGATGCTGGAGGTCACTGCTCCTGCCGTTGAGACTCAACTTGATGTGGACTTTGCAGACATTTACACAAACTCCTTGCTTTACAAGAACCAGGAGCTTATAAAAGAGCTTAGCACACCGGCTCCCGGGTCCAAAGATCTTTACTTTCCAACCAAATACTCCCAACCTTTCTCTATTCAGTGCAAAGCTTGTTTCTGGAAAATGTATTGGTCTTATTGGAGAAACTCTCAGTACAATGCCATCCGATTCTTCATAACCATTGTCATCGGTGTCTTATTCGGTATTATCTTCTGGCAGAAGGGACAGCAGATAACCCAACAACAAGATCTGATGAACCTTTTGGGAGCCTTGTTTTCTGCTGTGCTTTTCCTTGGAGCCACGAATGCTTCTGCGGTCCAATCTGTTGTTGCCATTGAAAGAACAGTTTTCTACCGCGAAAGAGCTGCCGGGATGTATTCTGAACTGCCTTATGCATTTTCTCAAGTGGCTGTAGAGACAATCTATGTTGCAATCCAAACATTCATATATACACTTCTCCTCTACTCCATGATTGGATTCGAGTGGAAAACCGGCAAATTCTTGTGGTTTTACTACTATATCTTAATGTGCTTCATCTACTTCACCATGTACGGCATGATGGTCGTTGCACTGACTCCAGGCCATCAGATTGCTGCCATTGTCATGTCCTTCTTCCTCATTTTCTGGAACTTGTTTTCCGGCTTCCTCATTCCAAGACCGCAAATACCAATCTGGTGGAGGTGGTACTACTGGGCTTCCCCTGTGGCCTGGACACTTTATGGCCTTGTGATGTCCCAAATGGGTGACAAGAATGCTGACATTGTCCTCCCTGGATATGGCACCGTGCCATTGAAGATGTTCCTCAAAGATGCCTTCGGTTTTGATTATGATTTCCTTCCCGCAGTCGCCGCCGCACACGTCGGCTGGGTTCTCCTTTTCTGCTTTGTGTTTGCCTATGGCATCAAGTTCCTCAACTTCCAAAGGAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

1454

Amino Acids

164.69

Weight (kDa)

7.25

Isoelectric Point (pI)

38.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_trans_N PF14510 114 - 163 4.9e-08 ABC-transporter N-terminal
ABC_tran PF00005 188 - 370 4.7e-17 ABC transporter
ABC2_membrane_7 PF19055 403 - 453 3.2e-06 ABC-2 type transporter
ABC2_membrane PF01061 524 - 736 2.5e-44 ABC-2 type transporter
PDR_assoc PF08370 741 - 807 1.7e-27 Plant PDR ABC transporter associated
ABC_tran PF00005 882 - 1033 2.5e-20 ABC transporter
ABC2_membrane PF01061 1178 - 1390 2.3e-55 ABC-2 type transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000245)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66950 AT2G36380
fragaria_vesca FvH4_3g29700 FvH4_3g29700 FvH4_3g29700 FvH4_3g29700 FvH4_3g29710 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29760 FvH4_3g29781 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150
malus_domestica MD02G1254900.v1.1 MD03G1119400.v1.1 MD03G1136800.v1.1 MD03G1137000.v1.1 MD04G1187500.v1.1 MD08G1208900.v1.1 MD08G1209000.v1.1 MD11G1159000.v1.1 MD11G1159100.v1.1 MD11G1159200.v1.1 MD12G1020800.v1.1 MD12G1021000.v1.1 MD14G1017900.v1.1 MD14G1018100.v1.1
prunus_persica Prupe.2G084300_v2.0.a1 Prupe.2G084300_v2.0.a1 Prupe.6G121200_v2.0.a1 Prupe.6G121200_v2.0.a1 Prupe.6G121500_v2.0.a1 Prupe.6G121800_v2.0.a1 Prupe.6G121900_v2.0.a1 Prupe.6G122100_v2.0.a1 Prupe.7G115200_v2.0.a1 Prupe.7G115200_v2.0.a1
pyrus_communis pycom02g21460 pycom03g09270 pycom03g09290 pycom07g05130 pycom08g18050 pycom11g12950 pycom11g12960 pycom11g12970 pycom12g01950 pycom12g01980 pycom14g01620 pycom14g01710 pycom14g01720 pycom16g12190
rosa_chinensis RchiOBHm_Chr1g0340571 RchiOBHm_Chr2g0107751 RchiOBHm_Chr3g0472451 RchiOBHm_Chr5g0055051 RchiOBHm_Chr5g0055091 RchiOBHm_Chr5g0055111 RchiOBHm_Chr5g0055121 RchiOBHm_Chr5g0055131 RchiOBHm_Chr5g0062371 RchiOBHm_Chr6g0265121 RchiOBHm_Chr6g0275771 RchiOBHm_Chr7g0187231
rosa_laevigata RLG00000006319 RLG00000013820 RLG00000024078 RLG00000034960 RLG00000034963 RLG00000034965 RLG00000034966 RLG00000034968 RLG00000034970
rosa_multiflora Rmu_co8358859.1_g000001 Rmu_co8422375.1_g000001 Rmu_co8427767.1_g000001 Rmu_co8474941.1_g000001 Rmu_sc0000925.1_g000009 Rmu_sc0001694.1_g000015 Rmu_sc0001694.1_g000022 Rmu_sc0001694.1_g000024 Rmu_sc0001694.1_g000030 Rmu_sc0003993.1_g000001 Rmu_sc0010632.1_g000001 Rmu_sc0035175.1_g000001
rosa_roxburghii Rroxscaffold_1G00025230 Rroxscaffold_1G00025240 Rroxscaffold_1G00025300 Rroxscaffold_1G00025320 Rroxscaffold_1G00025330 Rroxscaffold_1G00025360 Rroxscaffold_1G00025440 Rroxscaffold_1G00033590 Rroxscaffold_6G00408900
rosa_rugosa Rorug03G0125500.1 Rorug03G0125600.1 Rorug05G0290600 Rorug05G0291100 Rorug05G0291200 Rorug05G0291300
rosa_samantha Rh1CG035400 Rh1CG243200 Rh2DG410600 Rh3AG177500 Rh3CG193800 Rh3CG200900 Rh3DG171700 Rh5AG043000 Rh5AG360500 Rh5AG360900 Rh5AG361000 Rh5AG361300 Rh5AG441100 Rh5CG393700 Rh5CG393900 Rh5CG394200 Rh5DG247300 Rh5DG385200 Rh5DG385500 Rh5DG385800 Rh6BG272200 Rh6DG204000 Rh7AG084700 Rh7AG178300
rosa_wichuraiana Rw0G022120 Rw3G016410 Rw5G033910 Rw5G033920 Rw5G033940 Rw5G033960 Rw5G033970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 3455
AatII GACGTC 1 cut(s) 2730
Acc36I ACCTGC 1 cut(s) 2726
AccB1I GGYRCC 2 cut(s) 115, 4211
AccB7I CCANNNNNTGG 1 cut(s) 847
AccBSI CCGCTC 2 cut(s) 141, 193
AccI GTMKAC 1 cut(s) 38
AccII CGCG 3 cut(s) 1285, 1287, 3789
AclWI GGATC 8 cut(s) 401, 547, 560, 1879, 1892, 1925, 2234, 2517
AcoI YGGCCR 4 cut(s) 706, 1039, 1471, 3271
AcsI RAATTY 5 cut(s) 399, 427, 1727, 2204, 3929
AcuI CTGAAG 2 cut(s) 1732, 2472
AcyI GRCGYC 3 cut(s) 86, 116, 2727
AfaI GTAC 7 cut(s) 1274, 1628, 1713, 3136, 3587, 3983, 4118
AfeI AGCGCT 1 cut(s) 1052
AflII CTTAAG 1 cut(s) 563
AflIII ACRYGT 3 cut(s) 740, 2854, 4288
AhdI GACNNNNNGTC 1 cut(s) 3099
AhlI ACTAGT 1 cut(s) 944
AjiI CACGTC 2 cut(s) 277, 4291
AjnI CCWGG 9 cut(s) 593, 619, 1373, 2888, 3110, 3444, 4009, 4139, 4201
AjuI GAANNNNNNNTTGG 2 cut(s) 932, 964
AloI GAACNNNNNNTCC 2 cut(s) 4052, 4084
Alw21I GWGCWC 6 cut(s) 469, 835, 1233, 1522, 1741, 2335
Alw26I GTCTC 7 cut(s) 788, 934, 1214, 3028, 3107, 3380, 3842
AlwI GGATC 8 cut(s) 401, 547, 560, 1879, 1892, 1925, 2234, 2517
Ama87I CYCGRG 6 cut(s) 896, 1298, 1493, 2399, 2998, 3479
Aor51HI AGCGCT 1 cut(s) 1052
ApoI RAATTY 5 cut(s) 399, 427, 1727, 2204, 3929
ArsI GACNNNNNNTTYG 2 cut(s) 592, 624
AseI ATTAAT 1 cut(s) 521
Asp700I GAANNNNTTC 4 cut(s) 1730, 2204, 2579, 4229
AspLEI GCGC 6 cut(s) 118, 1053, 1216, 1287, 1614, 2228
AsuC2I CCSGG 7 cut(s) 1063, 2670, 2999, 3000, 3480, 3481, 3802
AsuHPI GGTGA 7 cut(s) 28, 271, 1022, 2513, 3176, 3967, 4187
AsuII TTCGAA 2 cut(s) 1308, 1401
AsuNHI GCTAGC 1 cut(s) 1958
AvaI CYCGRG 6 cut(s) 896, 1298, 1493, 2399, 2998, 3479
AxyI CCTNAGG 1 cut(s) 1880
BaeGI GKGCMC 1 cut(s) 1331
BalI TGGCCA 3 cut(s) 708, 1041, 1473
BamHI GGATCC 2 cut(s) 552, 1884
BanI GGYRCC 2 cut(s) 115, 4211
BanII GRGCYC 3 cut(s) 835, 1233, 1522
BauI CACGAG 1 cut(s) 2811
BbsI GAAGAC 5 cut(s) 345, 370, 947, 2347, 2612
Bbv12I GWGCWC 6 cut(s) 469, 835, 1233, 1522, 1741, 2335
BbvCI CCTCAGC 1 cut(s) 230
BceAI ACGGC 2 cut(s) 3365, 4000
BciT130I CCWGG 9 cut(s) 595, 621, 1375, 2890, 3112, 3446, 4011, 4141, 4203
BciVI GTATCC 1 cut(s) 979
BclI TGATCA 1 cut(s) 1755
BcnI CCSGG 7 cut(s) 1063, 2670, 2999, 3000, 3480, 3481, 3802
BcoDI GTCTC 7 cut(s) 788, 934, 1214, 3028, 3107, 3380, 3842
BcuI ACTAGT 1 cut(s) 944
BfaI CTAG 5 cut(s) 647, 732, 945, 1959, 2286
BfmI CTRYAG 2 cut(s) 1205, 3843
BfoI RGCGCY 2 cut(s) 119, 1054
BfrI CTTAAG 1 cut(s) 563
BfuAI ACCTGC 1 cut(s) 2726
BfuI GTATCC 1 cut(s) 979
BglII AGATCT 2 cut(s) 3490, 3679
BlpI GCTNAGC 1 cut(s) 3464
BmeRI GACNNNNNGTC 1 cut(s) 3099
BmeT110I CYCGRG 6 cut(s) 896, 1298, 1493, 2399, 2998, 3479
BmgBI CACGTC 2 cut(s) 277, 4291
BmrI ACTGGG 3 cut(s) 28, 1573, 4132
BmsI GCATC 7 cut(s) 216, 895, 2395, 3097, 3348, 4231, 4341
BmtI GCTAGC 1 cut(s) 1962
BmuI ACTGGG 3 cut(s) 28, 1573, 4132
BpiI GAAGAC 5 cut(s) 345, 370, 947, 2347, 2612
BplI GAGNNNNNCTC 2 cut(s) 3565, 3597
BpmI CTGGAG 4 cut(s) 603, 1935, 3383, 3993
Bpu10I CCTNAGC 1 cut(s) 230
Bpu1102I GCTNAGC 1 cut(s) 3464
Bpu14I TTCGAA 2 cut(s) 1308, 1401
BpuEI CTTGAG 6 cut(s) 379, 844, 953, 2153, 2264, 3819
BpuMI CCSGG 7 cut(s) 1063, 2670, 2999, 3000, 3480, 3481, 3802
BsaBI GATNNNNATC 3 cut(s) 1652, 1916, 2508
BsaHI GRCGYC 3 cut(s) 86, 116, 2727
BsaI GGTCTC 1 cut(s) 3107
BsaWI WCCGGW 1 cut(s) 1034
BsaXI ACNNNNNCTCC 6 cut(s) 3234, 3264, 3410, 3440, 3460, 3490
Bse118I RCCGGY 2 cut(s) 3472, 3923
Bse1I ACTGG 7 cut(s) 34, 1568, 1791, 2315, 2752, 3103, 4127
Bse21I CCTNAGG 1 cut(s) 1880
Bse3DI GCAATG 3 cut(s) 1797, 2028, 2370
Bse8I GATNNNNATC 3 cut(s) 1652, 1916, 2508
BseBI CCWGG 9 cut(s) 595, 621, 1375, 2890, 3112, 3446, 4011, 4141, 4203
BseJI GATNNNNATC 3 cut(s) 1652, 1916, 2508
BseMI GCAATG 3 cut(s) 1797, 2028, 2370
BseMII CTCAG 8 cut(s) 221, 506, 822, 939, 945, 1428, 1894, 3596
BseNI ACTGG 7 cut(s) 34, 1568, 1791, 2315, 2752, 3103, 4127
BseRI GAGGAG 6 cut(s) 91, 176, 179, 1036, 2267, 3881
BseSI GKGCMC 1 cut(s) 1331
BseX3I CGGCCG 1 cut(s) 3271
BseYI CCCAGC 4 cut(s) 57, 81, 286, 4296
BsgI GTGCAG 3 cut(s) 645, 2019, 3160
Bsh1236I CGCG 3 cut(s) 1285, 1287, 3789
Bsh1285I CGRYCG 4 cut(s) 189, 2193, 2265, 3274
BshNI GGYRCC 2 cut(s) 115, 4211
BsiEI CGRYCG 4 cut(s) 189, 2193, 2265, 3274
BsiHKAI GWGCWC 6 cut(s) 469, 835, 1233, 1522, 1741, 2335
BsiHKCI CYCGRG 6 cut(s) 896, 1298, 1493, 2399, 2998, 3479
BslFI GGGAC 5 cut(s) 386, 1720, 2779, 3669, 4150
BsmAI GTCTC 7 cut(s) 788, 934, 1214, 3028, 3107, 3380, 3842
BsmBI CGTCTC 1 cut(s) 788
BsmFI GGGAC 5 cut(s) 386, 1720, 2779, 3669, 4150
BsmI GAATGC 6 cut(s) 297, 908, 1985, 2191, 3742, 4189
Bso31I GGTCTC 1 cut(s) 3107
BsoBI CYCGRG 6 cut(s) 896, 1298, 1493, 2399, 2998, 3479
Bsp119I TTCGAA 2 cut(s) 1308, 1401
Bsp1286I GDGCHC 7 cut(s) 469, 835, 1233, 1331, 1522, 1741, 2335
Bsp1407I TGTACA 1 cut(s) 1626
Bsp1720I GCTNAGC 1 cut(s) 3464
Bsp19I CCATGG 2 cut(s) 1188, 3313
BspCNI CTCAG 8 cut(s) 222, 507, 821, 938, 944, 1429, 1893, 3595
BspFNI CGCG 3 cut(s) 1285, 1287, 3789
BspHI TCATGA 2 cut(s) 912, 2196
BspMAI CTGCAG 1 cut(s) 1209
BspMI ACCTGC 1 cut(s) 2726
BspOI GCTAGC 1 cut(s) 1962
BspPI GGATC 8 cut(s) 401, 547, 560, 1879, 1892, 1925, 2234, 2517
BspT104I TTCGAA 2 cut(s) 1308, 1401
BspT107I GGYRCC 2 cut(s) 115, 4211
BspTI CTTAAG 1 cut(s) 563
BspTNI GGTCTC 1 cut(s) 3107
BsrBI CCGCTC 2 cut(s) 141, 193
BsrDI GCAATG 3 cut(s) 1797, 2028, 2370
BsrFI RCCGGY 2 cut(s) 3472, 3923
BsrGI TGTACA 1 cut(s) 1626
BsrI ACTGG 7 cut(s) 34, 1568, 1791, 2315, 2752, 3103, 4127
BssAI RCCGGY 2 cut(s) 3472, 3923
BssNI GRCGYC 3 cut(s) 86, 116, 2727
BssSI CACGAG 1 cut(s) 2811
BssT1I CCWWGG 5 cut(s) 1188, 1276, 2138, 3313, 3724
Bst2BI CACGAG 1 cut(s) 2811
Bst2UI CCWGG 9 cut(s) 595, 621, 1375, 2890, 3112, 3446, 4011, 4141, 4203
Bst6I CTCTTC 3 cut(s) 859, 1206, 3026
BstACI GRCGYC 3 cut(s) 86, 116, 2727
BstAFI CTTAAG 1 cut(s) 563
BstAUI TGTACA 1 cut(s) 1626
BstBI TTCGAA 2 cut(s) 1308, 1401
BstC8I GCNNGC 9 cut(s) 114, 143, 531, 628, 758, 1212, 1482, 1960, 2559
BstDSI CCRYGG 2 cut(s) 1188, 3313
BstFNI CGCG 3 cut(s) 1285, 1287, 3789
BstH2I RGCGCY 2 cut(s) 119, 1054
BstHHI GCGC 6 cut(s) 118, 1053, 1216, 1287, 1614, 2228
BstMAI GTCTC 7 cut(s) 788, 934, 1214, 3028, 3107, 3380, 3842
BstMCI CGRYCG 4 cut(s) 189, 2193, 2265, 3274
BstNI CCWGG 9 cut(s) 595, 621, 1375, 2890, 3112, 3446, 4011, 4141, 4203
BstNSI RCATGY 3 cut(s) 744, 1584, 2858
BstSFI CTRYAG 2 cut(s) 1205, 3843
BstSLI GKGCMC 1 cut(s) 1331
BstUI CGCG 3 cut(s) 1285, 1287, 3789
BstV2I GAAGAC 5 cut(s) 345, 370, 947, 2347, 2612
BstX2I RGATCY 5 cut(s) 552, 1884, 2239, 3490, 3679
BstXI CCANNNNNNTGG 2 cut(s) 3049, 4107
BstYI RGATCY 5 cut(s) 552, 1884, 2239, 3490, 3679
BstZI CGGCCG 1 cut(s) 3271
Bsu36I CCTNAGG 1 cut(s) 1880
BsuI GTATCC 1 cut(s) 979
BtgI CCRYGG 2 cut(s) 1188, 3313
BtrI CACGTC 2 cut(s) 277, 4291
BtsI GCAGTG 2 cut(s) 467, 3369
BtsIMutI CAGTG 8 cut(s) 467, 769, 792, 1739, 2481, 3369, 3539, 4001
BveI ACCTGC 1 cut(s) 2726
Cac8I GCNNGC 9 cut(s) 114, 143, 531, 628, 758, 1212, 1482, 1960, 2559
CciI TCATGA 2 cut(s) 912, 2196
CfoI GCGC 6 cut(s) 118, 1053, 1216, 1287, 1614, 2228
Cfr10I RCCGGY 2 cut(s) 3472, 3923
Cfr9I CCCGGG 2 cut(s) 2998, 3479
CseI GACGC 1 cut(s) 75
Csp6I GTAC 7 cut(s) 1273, 1627, 1712, 3135, 3586, 3982, 4117
CviQI GTAC 7 cut(s) 1273, 1627, 1712, 3135, 3586, 3982, 4117
DinI GGCGCC 1 cut(s) 117
DriI GACNNNNNGTC 1 cut(s) 3099
EaeI YGGCCR 4 cut(s) 706, 1039, 1471, 3271
EagI CGGCCG 1 cut(s) 3271
Eam1104I CTCTTC 3 cut(s) 859, 1206, 3026
Eam1105I GACNNNNNGTC 1 cut(s) 3099
EarI CTCTTC 3 cut(s) 859, 1206, 3026
Ecl136II GAGCTC 3 cut(s) 833, 1231, 1520
EclXI CGGCCG 1 cut(s) 3271
Eco130I CCWWGG 5 cut(s) 1188, 1276, 2138, 3313, 3724
Eco147I AGGCCT 1 cut(s) 1451
Eco24I GRGCYC 3 cut(s) 835, 1233, 1522
Eco31I GGTCTC 1 cut(s) 3107
Eco32I GATATC 1 cut(s) 1000
Eco47III AGCGCT 1 cut(s) 1052
Eco52I CGGCCG 1 cut(s) 3271
Eco53kI GAGCTC 3 cut(s) 833, 1231, 1520
Eco57I CTGAAG 2 cut(s) 1732, 2472
Eco81I CCTNAGG 1 cut(s) 1880
Eco88I CYCGRG 6 cut(s) 896, 1298, 1493, 2399, 2998, 3479
EcoICRI GAGCTC 3 cut(s) 833, 1231, 1520
EcoO109I RGGNCCY 2 cut(s) 614, 1876
EcoRI GAATTC 1 cut(s) 2204
EcoRII CCWGG 9 cut(s) 593, 619, 1373, 2888, 3110, 3444, 4009, 4139, 4201
EcoRV GATATC 1 cut(s) 1000
EcoT14I CCWWGG 5 cut(s) 1188, 1276, 2138, 3313, 3724
EcoT22I ATGCAT 2 cut(s) 910, 3829
EcoT38I GRGCYC 3 cut(s) 835, 1233, 1522
EgeI GGCGCC 1 cut(s) 117
EheI GGCGCC 1 cut(s) 117
ErhI CCWWGG 5 cut(s) 1188, 1276, 2138, 3313, 3724
Esp3I CGTCTC 1 cut(s) 788
FalI AAGNNNNNCTT 4 cut(s) 1399, 1431, 2616, 2648
FaqI GGGAC 5 cut(s) 386, 1720, 2779, 3669, 4150
FauI CCCGC 3 cut(s) 134, 1896, 4279
FbaI TGATCA 1 cut(s) 1755
FblI GTMKAC 1 cut(s) 38
FriOI GRGCYC 3 cut(s) 835, 1233, 1522
FspBI CTAG 5 cut(s) 647, 732, 945, 1959, 2286
GlaI GCGC 6 cut(s) 117, 1052, 1215, 1286, 1613, 2227
GsaI CCCAGC 4 cut(s) 61, 85, 290, 4300
GsuI CTGGAG 4 cut(s) 603, 1935, 3383, 3993
HaeII RGCGCY 2 cut(s) 119, 1054
HgaI GACGC 1 cut(s) 75
HhaI GCGC 6 cut(s) 118, 1053, 1216, 1287, 1614, 2228
Hin1I GRCGYC 3 cut(s) 86, 116, 2727
Hin6I GCGC 6 cut(s) 116, 1051, 1214, 1285, 1612, 2226
HinP1I GCGC 6 cut(s) 116, 1051, 1214, 1285, 1612, 2226
HincII GTYRAC 1 cut(s) 39
HindII GTYRAC 1 cut(s) 39
HindIII AAGCTT 5 cut(s) 527, 662, 3210, 3287, 3540
HphI GGTGA 7 cut(s) 28, 271, 1022, 2513, 3176, 3967, 4187
Hpy99I CGWCG 4 cut(s) 26, 205, 3221, 4295
HpyCH4IV ACGT 7 cut(s) 203, 276, 797, 814, 2727, 3238, 4290
HpySE526I ACGT 7 cut(s) 203, 276, 797, 814, 2727, 3238, 4290
Hsp92I GRCGYC 3 cut(s) 86, 116, 2727
HspAI GCGC 6 cut(s) 116, 1051, 1214, 1285, 1612, 2226
KasI GGCGCC 1 cut(s) 115
Ksp22I TGATCA 1 cut(s) 1755
LweI GCATC 7 cut(s) 216, 895, 2395, 3097, 3348, 4231, 4341
MaeI CTAG 5 cut(s) 647, 732, 945, 1959, 2286
MaeII ACGT 7 cut(s) 203, 276, 797, 814, 2727, 3238, 4290
MbiI CCGCTC 2 cut(s) 141, 193
MfeI CAATTG 1 cut(s) 1163
MflI RGATCY 5 cut(s) 552, 1884, 2239, 3490, 3679
MhlI GDGCHC 7 cut(s) 469, 835, 1233, 1331, 1522, 1741, 2335
MlsI TGGCCA 3 cut(s) 708, 1041, 1473
MluNI TGGCCA 3 cut(s) 708, 1041, 1473
Mly113I GGCGCC 1 cut(s) 116
MlyI GAGTC 3 cut(s) 2602, 3382, 4000
MmeI TCCRAC 4 cut(s) 780, 808, 2569, 3527
Mox20I TGGCCA 3 cut(s) 708, 1041, 1473
Mph1103I ATGCAT 2 cut(s) 910, 3829
MroXI GAANNNNTTC 4 cut(s) 1730, 2204, 2579, 4229
MscI TGGCCA 3 cut(s) 708, 1041, 1473
MslI CAYNNNNRTG 3 cut(s) 3047, 3080, 4034
Msp20I TGGCCA 3 cut(s) 708, 1041, 1473
MspA1I CMGCKG 4 cut(s) 1487, 1529, 1955, 2820
MspCI CTTAAG 1 cut(s) 563
MunI CAATTG 1 cut(s) 1163
Mva1269I GAATGC 6 cut(s) 297, 908, 1985, 2191, 3742, 4189
MvaI CCWGG 9 cut(s) 595, 621, 1375, 2890, 3112, 3446, 4011, 4141, 4203
MvnI CGCG 3 cut(s) 1285, 1287, 3789
NarI GGCGCC 1 cut(s) 116
NciI CCSGG 7 cut(s) 1063, 2670, 2999, 3000, 3480, 3481, 3802
NcoI CCATGG 2 cut(s) 1188, 3313
NheI GCTAGC 1 cut(s) 1958
NmeAIII GCCGAG 1 cut(s) 3249
NmuCI GTSAC 9 cut(s) 259, 277, 694, 952, 1366, 1537, 3319, 3367, 4175
NsiI ATGCAT 2 cut(s) 910, 3829
NspI RCATGY 3 cut(s) 744, 1584, 2858
NspV TTCGAA 2 cut(s) 1308, 1401
PacI TTAATTAA 1 cut(s) 525
PaeR7I CTCGAG 1 cut(s) 1298
PagI TCATGA 2 cut(s) 912, 2196
PceI AGGCCT 1 cut(s) 1451
PciI ACATGT 2 cut(s) 740, 2854
PcsI WCGNNNNNNNCGW 2 cut(s) 1305, 1649
PctI GAATGC 6 cut(s) 297, 908, 1985, 2191, 3742, 4189
PdmI GAANNNNTTC 4 cut(s) 1730, 2204, 2579, 4229
PfeI GAWTC 9 cut(s) 882, 1320, 1904, 2292, 2504, 2870, 2981, 3600, 3909
PflFI GACNNNGTC 1 cut(s) 4193
PflMI CCANNNNNTGG 1 cut(s) 847
PfoI TCCNGGA 2 cut(s) 593, 1373
Ple19I CGATCG 2 cut(s) 189, 2193
PleI GAGTC 3 cut(s) 2602, 3382, 4000
PluTI GGCGCC 1 cut(s) 119
PpsI GAGTC 3 cut(s) 2602, 3382, 4000
PpuMI RGGWCCY 2 cut(s) 614, 1876
PscI ACATGT 2 cut(s) 740, 2854
PshBI ATTAAT 1 cut(s) 521
PsiI TTATAA 1 cut(s) 3455
Psp124BI GAGCTC 3 cut(s) 835, 1233, 1522
Psp5II RGGWCCY 2 cut(s) 614, 1876
Psp6I CCWGG 9 cut(s) 593, 619, 1373, 2888, 3110, 3444, 4009, 4139, 4201
PspFI CCCAGC 4 cut(s) 57, 81, 286, 4296
PspGI CCWGG 9 cut(s) 593, 619, 1373, 2888, 3110, 3444, 4009, 4139, 4201
PspPPI RGGWCCY 2 cut(s) 614, 1876
PspXI VCTCGAGB 1 cut(s) 1298
PstI CTGCAG 1 cut(s) 1209
PsuI RGATCY 5 cut(s) 552, 1884, 2239, 3490, 3679
PsyI GACNNNGTC 1 cut(s) 4193
PvuI CGATCG 2 cut(s) 189, 2193
PvuII CAGCTG 3 cut(s) 1487, 1529, 1955
RsaI GTAC 7 cut(s) 1274, 1628, 1713, 3136, 3587, 3983, 4118
RsaNI GTAC 7 cut(s) 1273, 1627, 1712, 3135, 3586, 3982, 4117
RseI CAYNNNNRTG 3 cut(s) 3047, 3080, 4034
SacI GAGCTC 3 cut(s) 835, 1233, 1522
SalI GTCGAC 1 cut(s) 37
SchI GAGTC 3 cut(s) 2602, 3382, 4000
SduI GDGCHC 7 cut(s) 469, 835, 1233, 1331, 1522, 1741, 2335
SfaNI GCATC 7 cut(s) 216, 895, 2395, 3097, 3348, 4231, 4341
SfcI CTRYAG 2 cut(s) 1205, 3843
SfoI GGCGCC 1 cut(s) 117
Sfr274I CTCGAG 1 cut(s) 1298
SfuI TTCGAA 2 cut(s) 1308, 1401
SlaI CTCGAG 1 cut(s) 1298
SmaI CCCGGG 2 cut(s) 3000, 3481
SmiMI CAYNNNNRTG 3 cut(s) 3047, 3080, 4034
SmlI CTYRAG 8 cut(s) 358, 563, 859, 968, 1298, 2132, 2279, 3834
SmoI CTYRAG 8 cut(s) 358, 563, 859, 968, 1298, 2132, 2279, 3834
SpeI ACTAGT 1 cut(s) 944
SseBI AGGCCT 1 cut(s) 1451
SspDI GGCGCC 1 cut(s) 115
SspI AATATT 1 cut(s) 2676
SspMI CTAG 5 cut(s) 647, 732, 945, 1959, 2286
SstI GAGCTC 3 cut(s) 835, 1233, 1522
StuI AGGCCT 1 cut(s) 1451
StyI CCWWGG 5 cut(s) 1188, 1276, 2138, 3313, 3724
TaiI ACGT 7 cut(s) 206, 279, 800, 817, 2730, 3241, 4293
TatI WGTACW 3 cut(s) 1626, 1711, 3585
TauI GCSGC 8 cut(s) 8, 121, 148, 185, 196, 3276, 4283, 4286
TfiI GAWTC 9 cut(s) 882, 1320, 1904, 2292, 2504, 2870, 2981, 3600, 3909
TscAI CASTG 8 cut(s) 474, 776, 792, 1746, 2481, 3376, 3539, 4008
TseFI GTSAC 9 cut(s) 259, 277, 694, 952, 1366, 1537, 3319, 3367, 4175
Tsp45I GTSAC 9 cut(s) 259, 277, 694, 952, 1366, 1537, 3319, 3367, 4175
TspGWI ACGGA 1 cut(s) 2885
TspMI CCCGGG 2 cut(s) 2998, 3479
TspRI CASTG 8 cut(s) 474, 776, 792, 1746, 2481, 3376, 3539, 4008
Tth111I GACNNNGTC 1 cut(s) 4193
Van91I CCANNNNNTGG 1 cut(s) 847
Vha464I CTTAAG 1 cut(s) 563
VspI ATTAAT 1 cut(s) 521
XapI RAATTY 5 cut(s) 399, 427, 1727, 2204, 3929
XbaI TCTAGA 1 cut(s) 2285
XceI RCATGY 3 cut(s) 744, 1584, 2858
XhoI CTCGAG 1 cut(s) 1298
XmaI CCCGGG 2 cut(s) 2998, 3479
XmiI GTMKAC 1 cut(s) 38
XmnI GAANNNNTTC 4 cut(s) 1730, 2204, 2579, 4229
XspI CTAG 5 cut(s) 647, 732, 945, 1959, 2286
ZraI GACGTC 1 cut(s) 2728
Zsp2I ATGCAT 2 cut(s) 910, 3829
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.