Rroxscaffold_6G00408900
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000245
Physical Location & Seq
Forward (+)
31420427 .. 31427442
7016 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00408900.1

Sequence Viewer

Length: 4350 bp
ATGGCGTTGGCTTTGGCCGGAGACGATCTGGCTCGGTCGACGAGCAGCCGGAGAAGCTATGGTTCACATGGGAGCAAGCGGAGCTGGGCGTCCACAAGTTTCCGGGAGGTGTGGCAGGTCCCGCCGGACGTGTTCAACCGGAGTGGCCGGCAGGACGAGGATGAAGAGCTCCGGTGGGCAGCTATCGAGCGGCTTCCGACTTACGACAGACTTAGAAGAGGGATGCTCCGGCAGGTACTCGACAATGGACGAGTGGTTACTGATGAAGTGGATGTTACGAGGCTTGGAGTGCAAGACAAGAAGGTATTGATGGAGAACATACTCAAAGTTGTGGAAGATGATAATGAAAAGTTTCTAAAGAGACTTAGAGACAGAACTGACAGAGTTGGGATTGAGATTCCGAAGATTGAAGTTAGATATGAGCATCTGTCGATTGAAGGAGATGTGTATGTTGGGAAAAGAGCACTGCCTACCCTGCTTAATGCCACCTTGAACACTATAGAGAGTGTTCTGGGTTTGATTCGTCTTGCTCCATCAAAGAAGAGAAACATCCAGATACTTAAAGATGTTAATGGAATAGTCAAACCCTCTAGGATGACCCTACTTTTGGGTCCTCCAGGTGCAGGTAAAACAACATTGCTGTTGGCACTTGCTGGGAAGCTTGATGACGATCTAAGGGTATCTGGGAACATCACTTACTGTGGTCATGAATTGAGAGAGTTTGTTCCCCGAAGGACATGTGCTTATATCAGTCAACATGATCTTCACTATGGAGAAATGACAGTGAGGGAGACATTGGATTTTTCGGGACGATGCTTAGGTGTGGGGACTAGATATGAAATGCTGGCTGAACTTTCCAGAAGAGAAAAAGAAGCTGGAATCAAGCCAGATCCTGAGATTGATGCGTTCATGAAAGCCACCTCAGTTTCAGGCCAGAAGACTAGTTTGGTCACAGATTATGTTCTCAAGATTCTTGGTTTGGATATCTGTTCTGATATTATGGTTGGTGATGAAATGAGAAGGGGTATTTCTGGTGGCCAGAAAAAGCGTGTCACAACTGGGGAAATGTTGGTTGGACCAGCAAAGGTGCTTTTGATGGATGAAATTTCAACAGGGTTAGATAGTTCCACAACTTTTCAGATATGCAGGTACATGAGGCAAATGGTACATATAATGGATGTCACAATGGTCATCTCTCTTCTTCAACCAGCACCAGAGACATTTGAGCTGTTTGATGACCTTATCTTACTTTCAGAAGGTCAAATTGTGTACCAAGGTCCACGTGAGAGTGTTCTCGAATTCTTTGAATACATGGGTTTCAAATGCCCGGAGAGGAAAGGAGTTGCTGACTTTTTGCAAGAAGTAACATCTAAGAAGGATCAAGAACAATACTGGTTCAAGAAAAGCGAACCTTACAGATACATTGAAGTTGCTGAGTTTGTTGAGTGCTTCAACAATTTCCAATATGGCCAACAGATTGCATCGGAACTTGGGGTTCCTTATGAAAAGTCAAGAGCTCACCCAGCTGCATTAGTCAGAGAGAAATATGGTATTTCAAATTGGGAACTGTTCAAGGCTTGTTTTGCAAGGGAGTGGCTGCTAATGAAGCGCAATTCTTTCGTGTATGTATTCAAGACAACCCAGATAACAATTATGTCAGTAATTGCGTTCACAGTGTTCCTTAGGACTCAAATGCCAGTGGGAACTGTACAAGATGGAGGAAAATTTTTCGGAGCCCTGTTTTTCAGTCTGATTAATGTCATGTTCAATGGAATGGCAGAACTGGCAATGACTGTTTTCAGGCTTCCTGTGTTTTATAAACAGAGGGATTTCTTGTTTTATCCTGCTTGGGCTTTTGGTTTGCCCATTTGGGTCCTTAGGATCCCCCTATCTTTAATGGAGTCGGCAATATGGATTGTTCTTACTTATTACACCATTGGATTTGCTCCAGCTGCTAGCAGATTTTTCAGACAGTTTTTGGCTTTTTTTGGCATACATCAAATGGCACTGTCCCTCTTTCGGTTCATTGCTGCTCTTGGAAGAACACAAACGGTTGCAAATACTCTCGGTACCTTCACCTTGCTTATGGTGTTTGTTCTGGGAGGATTTATTGTTGCCAAAAATGACATTGAGCCTTGGATGATATGGGGCTACTATATATCTCCTATGATGTATGGACAGAATGCAATTGTCATGAACGAATTCCTCGATAAAAGATGGAGCGCGCCAAATCCAGATCCAAGAATTAATGAACCTACAGTTGGGAAAGTCCTCCTTAAGTCCAGAGGATTCTTCACAGATGAATATTGGTTCTGGATATGTATTGGAGCACTATTTGGATTTTCTCTTCTCTTTAACATCTTATTCATTGCTGCATTGACTTTTCTGAATCCTCTTGGAGATTCGAAAGCTGTCATAGCTGATGAAAAAAGTGAGAAAAAGAAAAGAAAGTCATCAACTGAAGGTATTGATATGGCATTGAGGAGTTCTTCAGAGCATGCACCAACGAAAGGAATGGTTTTGCCCTTCCAACCCCTTTCACTCGCATTTAACCATGTGAACTACTATGTCGATATGCCAGCTGAAATGAAGAGTCAAGGAGTCGATCAAGATCGCCTTCAGCTCCTACGAGATGTCAGTGGTGCTTTTAGACCGGGAGTATTGACAGCACTTGTAGGTGTTAGTGGTGCTGGAAAAACAACTCTTATGGACGTCTTGGCAGGAAGAAAGACAGGTGGTTATATTGAAGGAAGTATTAACATCTCCGGTTATCCAAAAAAACAAGAAACATTTGCTCGTGTTAGTGGTTATTGTGAGCAGAATGACATCCATTCACCACATGTTACTGTATACGAATCTCTGCTGTATTCAGCCTGGCTCCGTCTTTCTTCAAATGTAAAGACCCAAACAAGAAAGATGTTTGTTGAGGAAGTCATGGAGTTGGTTGAGCTTAATCCCATTAGAGATGCTCTAGTTGGCCTTCCGGGAATAGATGGTCTTTCAACAGAACAAAGGAAGAGACTAACCATAGCTGTGGAGCTGGTAGCCAACCCCTCTATTATTTTCATGGATGAACCAACATCTGGACTTGATGCCAGGGCTGCTGCCATCGTTATGCGTACTGTGAGAAACACAGTGGACACTGGAAGAACTGTCGTCTGCACGATTCATCAGCCAAGCATAGATATTTTTGAAGCTTTTGATGAGCTGCTTCTGATGAAACGAGGAGGGCAAGTTATATATGCTGGACCTCTAGGTCGCCAATCTCACAAGCTTGTAGAATATTTTGAAGCTGTTCCTGGGGTCACTAAGATTAAGGATGGTTACAATCCTGCTACATGGATGCTTGAGGTTACTGCTCCTTCAGTTGAGGCTCAACTGGATGTGGACTTTGCAGACATTTATGCCAATTCCTCACTTTACCAGAGGAATCAAGAGCTTATCAAAGAGCTTAGTACTCCAGTGCCAGGGTCCAAGGATCTCTACTTCCCAACCAAATACTCCCAACCATTCCCTGTTCAATGCAAAGCTTGTTTCTGGAAAATGCATTGGTCTTATTGGAGAAACCCCCAGTACAACGCCATCCGGTTCTTCATGACAATAGTCATTGGTGTTTTATTTGGTCTTATCTTCTGGAACAAGGGACAACAGACAACCCAACAACAAGATCTGATGAACCTTTTGGGAGCCATGTATGCTGCTGTGCTTTTCCTTGGAGCTACAAATGCTTCTGCGGTGCAAGCAGTTGTTGCCATTGAAAGAACAGTTTTCTATCGTGAAAGAGCGGCTGGGATGTATTCTGAACTGCCTTATGCATTTGCTCAGGTGGCCATAGAGACAATCTATGTTGCAATTCAAACTATTATCTACACTCTTATCCTCTACTCTATGATTGGATTTGAGTGGAAGATAGCCAAATTCCTCTGGTTCTACTACTACATACTGATGTGCTTCATCTACTTCACAATGTATGGGATGATGGTTGTTGCACTCACTCCAGGCCACCAGATTGCTGCAATTGTTATGTCCTTTTTCCTCAGTTTCTGGAATTTGTTTTCCGGGTTTCTCATTCCAAGACCGCAAATCCCAATATGGTGGAGGTGGTACTACTGGGCTTCACCTGTGGCTTGGACACTATATGGCCTTGTGACCTCTCAAGTGGGTGACAAGGATGCTGATCTTGTGCTACCTGGATATGGCACTATGAAATTGAAGACGTTCCTTAAGGATCAGCTGGCTTTTGATTATGATTTCCTTCCGGCTGTCGCAGCTGCCCACGTTGGCTGGGTCCTCGTTTTCTTCTTTGTGTTTGCATATGGAATCAAGTTCCTCAACTTTCAGAGGAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

1449

Amino Acids

164.63

Weight (kDa)

8.48

Isoelectric Point (pI)

40.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_trans_N PF14510 113 - 162 7.7e-09 ABC-transporter N-terminal
ABC_tran PF00005 187 - 369 4.8e-17 ABC transporter
ABC2_membrane_7 PF19055 402 - 453 3.8e-06 ABC-2 type transporter
ABC2_membrane PF01061 523 - 735 7.2e-47 ABC-2 type transporter
PDR_assoc PF08370 740 - 806 5.1e-28 Plant PDR ABC transporter associated
ABC_tran PF00005 876 - 1028 2.9e-21 ABC transporter
ABC2_membrane PF01061 1174 - 1386 3.1e-58 ABC-2 type transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000245)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66950 AT2G36380
fragaria_vesca FvH4_3g29700 FvH4_3g29700 FvH4_3g29700 FvH4_3g29700 FvH4_3g29710 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29760 FvH4_3g29781 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150
malus_domestica MD02G1254900.v1.1 MD03G1119400.v1.1 MD03G1136800.v1.1 MD03G1137000.v1.1 MD04G1187500.v1.1 MD08G1208900.v1.1 MD08G1209000.v1.1 MD11G1159000.v1.1 MD11G1159100.v1.1 MD11G1159200.v1.1 MD12G1020800.v1.1 MD12G1021000.v1.1 MD14G1017900.v1.1 MD14G1018100.v1.1
prunus_persica Prupe.2G084300_v2.0.a1 Prupe.2G084300_v2.0.a1 Prupe.6G121200_v2.0.a1 Prupe.6G121200_v2.0.a1 Prupe.6G121500_v2.0.a1 Prupe.6G121800_v2.0.a1 Prupe.6G121900_v2.0.a1 Prupe.6G122100_v2.0.a1 Prupe.7G115200_v2.0.a1 Prupe.7G115200_v2.0.a1
pyrus_communis pycom02g21460 pycom03g09270 pycom03g09290 pycom07g05130 pycom08g18050 pycom11g12950 pycom11g12960 pycom11g12970 pycom12g01950 pycom12g01980 pycom14g01620 pycom14g01710 pycom14g01720 pycom16g12190
rosa_chinensis RchiOBHm_Chr1g0340571 RchiOBHm_Chr2g0107751 RchiOBHm_Chr3g0472451 RchiOBHm_Chr5g0055051 RchiOBHm_Chr5g0055091 RchiOBHm_Chr5g0055111 RchiOBHm_Chr5g0055121 RchiOBHm_Chr5g0055131 RchiOBHm_Chr5g0062371 RchiOBHm_Chr6g0265121 RchiOBHm_Chr6g0275771 RchiOBHm_Chr7g0187231
rosa_laevigata RLG00000006319 RLG00000013820 RLG00000024078 RLG00000034960 RLG00000034963 RLG00000034965 RLG00000034966 RLG00000034968 RLG00000034970
rosa_multiflora Rmu_co8358859.1_g000001 Rmu_co8422375.1_g000001 Rmu_co8427767.1_g000001 Rmu_co8474941.1_g000001 Rmu_sc0000925.1_g000009 Rmu_sc0001694.1_g000015 Rmu_sc0001694.1_g000022 Rmu_sc0001694.1_g000024 Rmu_sc0001694.1_g000030 Rmu_sc0003993.1_g000001 Rmu_sc0010632.1_g000001 Rmu_sc0035175.1_g000001
rosa_roxburghii Rroxscaffold_1G00025230 Rroxscaffold_1G00025240 Rroxscaffold_1G00025300 Rroxscaffold_1G00025320 Rroxscaffold_1G00025330 Rroxscaffold_1G00025360 Rroxscaffold_1G00025440 Rroxscaffold_1G00033590 Rroxscaffold_6G00408900
rosa_rugosa Rorug03G0125500.1 Rorug03G0125600.1 Rorug05G0290600 Rorug05G0291100 Rorug05G0291200 Rorug05G0291300
rosa_samantha Rh1CG035400 Rh1CG243200 Rh2DG410600 Rh3AG177500 Rh3CG193800 Rh3CG200900 Rh3DG171700 Rh5AG043000 Rh5AG360500 Rh5AG360900 Rh5AG361000 Rh5AG361300 Rh5AG441100 Rh5CG393700 Rh5CG393900 Rh5CG394200 Rh5DG247300 Rh5DG385200 Rh5DG385500 Rh5DG385800 Rh6BG272200 Rh6DG204000 Rh7AG084700 Rh7AG178300
rosa_wichuraiana Rw0G022120 Rw3G016410 Rw5G033910 Rw5G033920 Rw5G033940 Rw5G033960 Rw5G033970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1818
AasI GACNNNNNNGTC 1 cut(s) 3255
AatII GACGTC 1 cut(s) 2715
Acc36I ACCTGC 4 cut(s) 106, 223, 614, 1137
Acc65I GGTACC 1 cut(s) 2069
AccB1I GGYRCC 1 cut(s) 2069
AccB7I CCANNNNNTGG 1 cut(s) 3083
AccBSI CCGCTC 2 cut(s) 190, 3785
AccI GTMKAC 2 cut(s) 38, 2850
AccII CGCG 1 cut(s) 2225
AciI CCGC 6 cut(s) 79, 122, 190, 3734, 3785, 4079
AclWI GGATC 7 cut(s) 884, 1386, 1876, 1889, 2231, 3486, 4236
AcoI YGGCCR 5 cut(s) 15, 145, 1036, 1468, 3828
AcsI RAATTY 6 cut(s) 1104, 1298, 1724, 2201, 3917, 4048
AcuI CTGAAG 4 cut(s) 2475, 2481, 2603, 3348
AcvI CACGTG 1 cut(s) 1283
AcyI GRCGYC 2 cut(s) 89, 2712
AfiI CCNNNNNNNGG 8 cut(s) 607, 623, 2019, 2261, 2510, 3083, 3467, 4196
AflII CTTAAG 2 cut(s) 2276, 4223
AflIII ACRYGT 3 cut(s) 129, 737, 2839
AhlI ACTAGT 1 cut(s) 941
AjiI CACGTC 1 cut(s) 130
AjnI CCWGG 7 cut(s) 616, 2873, 3095, 3298, 3466, 3997, 4189
AjuI GAANNNNNNNTTGG 6 cut(s) 929, 961, 1056, 1088, 2244, 2276
Alw21I GWGCWC 4 cut(s) 171, 466, 1519, 2332
Alw26I GTCTC 7 cut(s) 15, 355, 363, 785, 1211, 3013, 3830
AlwI GGATC 7 cut(s) 884, 1386, 1876, 1889, 2231, 3486, 4236
AlwNI CAGNNNCTG 2 cut(s) 893, 4044
AoxI GGCC 9 cut(s) 15, 145, 931, 1036, 1468, 2977, 3828, 4000, 4141
ApoI RAATTY 6 cut(s) 1104, 1298, 1724, 2201, 3917, 4048
ArsI GACNNNNNNTTYG 2 cut(s) 589, 621
AseI ATTAAT 2 cut(s) 1755, 2247
Asp700I GAANNNNTTC 4 cut(s) 351, 2201, 3294, 4217
Asp718I GGTACC 1 cut(s) 2069
AspLEI GCGC 3 cut(s) 1611, 2225, 2227
AspS9I GGNCC 8 cut(s) 118, 611, 1076, 1277, 1873, 3248, 3471, 4288
AsuC2I CCSGG 5 cut(s) 104, 1328, 2655, 2985, 4060
AsuHPI GGTGA 6 cut(s) 1019, 1511, 2068, 2826, 4110, 4175
AsuII TTCGAA 1 cut(s) 2405
AsuNHI GCTAGC 1 cut(s) 1955
AvaII GGWCC 8 cut(s) 118, 611, 1076, 1277, 1873, 3248, 3471, 4288
AxyI CCTNAGG 2 cut(s) 1682, 1877
BalI TGGCCA 3 cut(s) 1038, 1470, 3830
BamHI GGATCC 1 cut(s) 1881
BanI GGYRCC 1 cut(s) 2069
BanII GRGCYC 3 cut(s) 171, 1519, 1738
BauI CACGAG 1 cut(s) 2796
BbrPI CACGTG 1 cut(s) 1283
BbsI GAAGAC 2 cut(s) 944, 4220
Bbv12I GWGCWC 4 cut(s) 171, 466, 1519, 2332
BcgI CGANNNNNNTGC 2 cut(s) 1600, 1634
BciT130I CCWGG 7 cut(s) 618, 2875, 3097, 3300, 3468, 3999, 4191
BcnI CCSGG 5 cut(s) 104, 1328, 2655, 2985, 4060
BcoDI GTCTC 7 cut(s) 15, 355, 363, 785, 1211, 3013, 3830
BcuI ACTAGT 1 cut(s) 941
BfaI CTAG 6 cut(s) 591, 831, 942, 1956, 2972, 3254
BfmI CTRYAG 2 cut(s) 498, 2256
BfrI CTTAAG 2 cut(s) 2276, 4223
BfuAI ACCTGC 4 cut(s) 106, 223, 614, 1137
BglII AGATCT 1 cut(s) 3667
BmcAI AGTACT 1 cut(s) 3457
Bme18I GGWCC 8 cut(s) 118, 611, 1076, 1277, 1873, 3248, 3471, 4288
BmgBI CACGTC 1 cut(s) 130
BmgT120I GGNCC 8 cut(s) 118, 611, 1076, 1277, 1873, 3248, 3471, 4288
BmrI ACTGGG 3 cut(s) 1068, 3565, 4120
BmsI GCATC 9 cut(s) 213, 433, 803, 892, 1490, 2956, 3082, 3333, 4162
BmtI GCTAGC 1 cut(s) 1959
BmuI ACTGGG 3 cut(s) 1068, 3565, 4120
BoxI GACNNNNGTC 1 cut(s) 3602
BpiI GAAGAC 2 cut(s) 944, 4220
BplI GAGNNNNNCTC 2 cut(s) 210, 242
BpmI CTGGAG 4 cut(s) 600, 1932, 3444, 3981
Bpu10I CCTNAGC 2 cut(s) 817, 3822
Bpu14I TTCGAA 1 cut(s) 2405
BpuEI CTTGAG 3 cut(s) 950, 3368, 4140
BpuMI CCSGG 5 cut(s) 104, 1328, 2655, 2985, 4060
BsaAI YACGTR 1 cut(s) 1283
BsaBI GATNNNNATC 3 cut(s) 669, 2610, 4176
BsaHI GRCGYC 2 cut(s) 89, 2712
BsaJI CCNNGG 7 cut(s) 1273, 2135, 3096, 3299, 3467, 3474, 3712
BsaWI WCCGGW 4 cut(s) 138, 171, 2765, 3585
BsaXI ACNNNNNCTCC 2 cut(s) 3219, 3249
Bsc4I CCNNNNNNNGG 8 cut(s) 607, 623, 2019, 2261, 2510, 3083, 3467, 4196
Bse118I RCCGGY 1 cut(s) 147
Bse1I ACTGG 9 cut(s) 1063, 1397, 1697, 1788, 3148, 3384, 3461, 3571, 4115
Bse21I CCTNAGG 2 cut(s) 1682, 1877
Bse3DI GCAATG 4 cut(s) 635, 1794, 2025, 2367
Bse8I GATNNNNATC 3 cut(s) 669, 2610, 4176
BseBI CCWGG 7 cut(s) 618, 2875, 3097, 3300, 3468, 3999, 4191
BseDI CCNNGG 7 cut(s) 1273, 2135, 3096, 3299, 3467, 3474, 3712
BseJI GATNNNNATC 3 cut(s) 669, 2610, 4176
BseLI CCNNNNNNNGG 8 cut(s) 607, 623, 2019, 2261, 2510, 3083, 3467, 4196
BseMI GCAATG 4 cut(s) 635, 1794, 2025, 2367
BseMII CTCAG 5 cut(s) 885, 936, 1425, 3836, 4051
BseNI ACTGG 9 cut(s) 1063, 1397, 1697, 1788, 3148, 3384, 3461, 3571, 4115
BsePI GCGCGC 1 cut(s) 2223
BseRI GAGGAG 2 cut(s) 2497, 3240
BseYI CCCAGC 5 cut(s) 84, 653, 1522, 3788, 4284
BsgI GTGCAG 2 cut(s) 642, 3145
Bsh1236I CGCG 1 cut(s) 2225
Bsh1285I CGRYCG 1 cut(s) 38
BshFI GGCC 9 cut(s) 17, 147, 933, 1038, 1470, 2979, 3830, 4002, 4143
BshNI GGYRCC 1 cut(s) 2069
BsiEI CGRYCG 1 cut(s) 38
BsiHKAI GWGCWC 4 cut(s) 171, 466, 1519, 2332
BslFI GGGAC 5 cut(s) 104, 822, 841, 1996, 3657
BslI CCNNNNNNNGG 8 cut(s) 607, 623, 2019, 2261, 2510, 3083, 3467, 4196
BsmAI GTCTC 7 cut(s) 15, 355, 363, 785, 1211, 3013, 3830
BsmBI CGTCTC 1 cut(s) 15
BsmFI GGGAC 5 cut(s) 104, 822, 841, 1996, 3657
BsmI GAATGC 1 cut(s) 2188
BsnI GGCC 9 cut(s) 17, 147, 933, 1038, 1470, 2979, 3830, 4002, 4143
Bsp119I TTCGAA 1 cut(s) 2405
Bsp1286I GDGCHC 5 cut(s) 171, 466, 1519, 1738, 2332
Bsp1407I TGTACA 1 cut(s) 1708
BspACI CCGC 6 cut(s) 79, 122, 190, 3734, 3785, 4079
BspANI GGCC 9 cut(s) 17, 147, 933, 1038, 1470, 2979, 3830, 4002, 4143
BspCNI CTCAG 5 cut(s) 886, 935, 1426, 3835, 4050
BspFNI CGCG 1 cut(s) 2225
BspHI TCATGA 4 cut(s) 706, 909, 2193, 3594
BspMI ACCTGC 4 cut(s) 106, 223, 614, 1137
BspOI GCTAGC 1 cut(s) 1959
BspPI GGATC 7 cut(s) 884, 1386, 1876, 1889, 2231, 3486, 4236
BspQI GCTCTTC 1 cut(s) 159
BspT104I TTCGAA 1 cut(s) 2405
BspT107I GGYRCC 1 cut(s) 2069
BspTI CTTAAG 2 cut(s) 2276, 4223
BsrBI CCGCTC 2 cut(s) 190, 3785
BsrDI GCAATG 4 cut(s) 635, 1794, 2025, 2367
BsrFI RCCGGY 1 cut(s) 147
BsrGI TGTACA 1 cut(s) 1708
BsrI ACTGG 9 cut(s) 1063, 1397, 1697, 1788, 3148, 3384, 3461, 3571, 4115
BssAI RCCGGY 1 cut(s) 147
BssECI CCNNGG 7 cut(s) 1273, 2135, 3096, 3299, 3467, 3474, 3712
BssHII GCGCGC 1 cut(s) 2223
BssNAI GTATAC 1 cut(s) 2851
BssNI GRCGYC 2 cut(s) 89, 2712
BssSI CACGAG 1 cut(s) 2796
BssT1I CCWWGG 4 cut(s) 1273, 2135, 3474, 3712
Bst1107I GTATAC 1 cut(s) 2851
Bst2BI CACGAG 1 cut(s) 2796
Bst2UI CCWGG 7 cut(s) 618, 2875, 3097, 3300, 3468, 3999, 4191
Bst6I CTCTTC 8 cut(s) 159, 211, 536, 856, 1203, 2352, 2585, 3011
BstACI GRCGYC 2 cut(s) 89, 2712
BstAFI CTTAAG 2 cut(s) 2276, 4223
BstAPI GCANNNNNTGC 1 cut(s) 3749
BstAUI TGTACA 1 cut(s) 1708
BstBAI YACGTR 1 cut(s) 1283
BstBI TTCGAA 1 cut(s) 2405
BstC8I GCNNGC 9 cut(s) 77, 149, 846, 1957, 2225, 2499, 2580, 3741, 4236
BstFNI CGCG 1 cut(s) 2225
BstHHI GCGC 3 cut(s) 1611, 2225, 2227
BstMAI GTCTC 7 cut(s) 15, 355, 363, 785, 1211, 3013, 3830
BstMCI CGRYCG 1 cut(s) 38
BstNI CCWGG 7 cut(s) 618, 2875, 3097, 3300, 3468, 3999, 4191
BstNSI RCATGY 3 cut(s) 741, 2501, 2843
BstPAI GACNNNNGTC 1 cut(s) 3602
BstSFI CTRYAG 2 cut(s) 498, 2256
BstUI CGCG 1 cut(s) 2225
BstV2I GAAGAC 2 cut(s) 944, 4220
BstX2I RGATCY 5 cut(s) 889, 1881, 2236, 3478, 3667
BstXI CCANNNNNNTGG 2 cut(s) 3034, 4095
BstYI RGATCY 5 cut(s) 889, 1881, 2236, 3478, 3667
BstZ17I GTATAC 1 cut(s) 2851
Bsu36I CCTNAGG 2 cut(s) 1682, 1877
BsuRI GGCC 9 cut(s) 17, 147, 933, 1038, 1470, 2979, 3830, 4002, 4143
BtrI CACGTC 1 cut(s) 130
BtsI GCAGTG 1 cut(s) 464
BtsIMutI CAGTG 9 cut(s) 464, 789, 1680, 1704, 2006, 2644, 3141, 3141, 3468
BveI ACCTGC 4 cut(s) 106, 223, 614, 1137
Cac8I GCNNGC 9 cut(s) 77, 149, 846, 1957, 2225, 2499, 2580, 3741, 4236
CaiI CAGNNNCTG 2 cut(s) 893, 4044
CciI TCATGA 4 cut(s) 706, 909, 2193, 3594
CfoI GCGC 3 cut(s) 1611, 2225, 2227
Cfr10I RCCGGY 1 cut(s) 147
Cfr13I GGNCC 8 cut(s) 118, 611, 1076, 1277, 1873, 3248, 3471, 4288
CseI GACGC 1 cut(s) 78
CspCI CAANNNNNGTGG 2 cut(s) 124, 159
DrdI GACNNNNNNGTC 1 cut(s) 3255
DseDI GACNNNNNNGTC 1 cut(s) 3255
EaeI YGGCCR 5 cut(s) 15, 145, 1036, 1468, 3828
Eam1104I CTCTTC 8 cut(s) 159, 211, 536, 856, 1203, 2352, 2585, 3011
EarI CTCTTC 8 cut(s) 159, 211, 536, 856, 1203, 2352, 2585, 3011
Ecl136II GAGCTC 2 cut(s) 169, 1517
Eco130I CCWWGG 4 cut(s) 1273, 2135, 3474, 3712
Eco24I GRGCYC 3 cut(s) 171, 1519, 1738
Eco32I GATATC 1 cut(s) 985
Eco47I GGWCC 8 cut(s) 118, 611, 1076, 1277, 1873, 3248, 3471, 4288
Eco53kI GAGCTC 2 cut(s) 169, 1517
Eco57I CTGAAG 4 cut(s) 2475, 2481, 2603, 3348
Eco72I CACGTG 1 cut(s) 1283
Eco81I CCTNAGG 2 cut(s) 1682, 1877
EcoICRI GAGCTC 2 cut(s) 169, 1517
EcoO109I RGGNCCY 4 cut(s) 118, 611, 1873, 4288
EcoRI GAATTC 2 cut(s) 1298, 2201
EcoRII CCWGG 7 cut(s) 616, 2873, 3095, 3298, 3466, 3997, 4189
EcoRV GATATC 1 cut(s) 985
EcoT14I CCWWGG 4 cut(s) 1273, 2135, 3474, 3712
EcoT22I ATGCAT 2 cut(s) 3549, 3817
EcoT38I GRGCYC 3 cut(s) 171, 1519, 1738
ErhI CCWWGG 4 cut(s) 1273, 2135, 3474, 3712
Esp3I CGTCTC 1 cut(s) 15
FalI AAGNNNNNCTT 6 cut(s) 1396, 1428, 2259, 2291, 2601, 2633
FaqI GGGAC 5 cut(s) 104, 822, 841, 1996, 3657
FauI CCCGC 1 cut(s) 129
FauNDI CATATG 1 cut(s) 4315
FblI GTMKAC 2 cut(s) 38, 2850
FriOI GRGCYC 3 cut(s) 171, 1519, 1738
FspBI CTAG 6 cut(s) 591, 831, 942, 1956, 2972, 3254
GlaI GCGC 3 cut(s) 1610, 2224, 2226
GsaI CCCAGC 5 cut(s) 88, 657, 1526, 3792, 4288
GsuI CTGGAG 4 cut(s) 600, 1932, 3444, 3981
HaeIII GGCC 9 cut(s) 17, 147, 933, 1038, 1470, 2979, 3830, 4002, 4143
HgaI GACGC 1 cut(s) 78
HhaI GCGC 3 cut(s) 1611, 2225, 2227
Hin1I GRCGYC 2 cut(s) 89, 2712
Hin6I GCGC 3 cut(s) 1609, 2223, 2225
HinP1I GCGC 3 cut(s) 1609, 2223, 2225
HincII GTYRAC 2 cut(s) 39, 755
HindII GTYRAC 2 cut(s) 39, 755
HindIII AAGCTT 4 cut(s) 659, 3195, 3272, 3528
HphI GGTGA 6 cut(s) 1019, 1511, 2068, 2826, 4110, 4175
Hpy99I CGWCG 1 cut(s) 43
HpyCH4IV ACGT 5 cut(s) 129, 1282, 2712, 4217, 4278
HpySE526I ACGT 5 cut(s) 129, 1282, 2712, 4217, 4278
Hsp92I GRCGYC 2 cut(s) 89, 2712
HspAI GCGC 3 cut(s) 1609, 2223, 2225
KpnI GGTACC 1 cut(s) 2073
KroI GCCGGC 1 cut(s) 147
KroNI GCCGGC 1 cut(s) 149
LguI GCTCTTC 1 cut(s) 159
LweI GCATC 9 cut(s) 213, 433, 803, 892, 1490, 2956, 3082, 3333, 4162
MaeI CTAG 6 cut(s) 591, 831, 942, 1956, 2972, 3254
MaeII ACGT 5 cut(s) 129, 1282, 2712, 4217, 4278
MbiI CCGCTC 2 cut(s) 190, 3785
MfeI CAATTG 2 cut(s) 2187, 4017
MflI RGATCY 5 cut(s) 889, 1881, 2236, 3478, 3667
MhlI GDGCHC 5 cut(s) 171, 466, 1519, 1738, 2332
MlsI TGGCCA 3 cut(s) 1038, 1470, 3830
MluNI TGGCCA 3 cut(s) 1038, 1470, 3830
MlyI GAGTC 4 cut(s) 1681, 1910, 2602, 2610
MmeI TCCRAC 3 cut(s) 221, 1054, 2554
Mox20I TGGCCA 3 cut(s) 1038, 1470, 3830
Mph1103I ATGCAT 2 cut(s) 3549, 3817
MroNI GCCGGC 1 cut(s) 147
MroXI GAANNNNTTC 4 cut(s) 351, 2201, 3294, 4217
MscI TGGCCA 3 cut(s) 1038, 1470, 3830
MslI CAYNNNNRTG 3 cut(s) 3032, 3113, 3944
Msp20I TGGCCA 3 cut(s) 1038, 1470, 3830
MspA1I CMGCKG 5 cut(s) 1526, 1952, 2582, 4234, 4271
MspCI CTTAAG 2 cut(s) 2276, 4223
MunI CAATTG 2 cut(s) 2187, 4017
Mva1269I GAATGC 1 cut(s) 2188
MvaI CCWGG 7 cut(s) 618, 2875, 3097, 3300, 3468, 3999, 4191
MvnI CGCG 1 cut(s) 2225
NaeI GCCGGC 1 cut(s) 149
NciI CCSGG 5 cut(s) 104, 1328, 2655, 2985, 4060
NdeI CATATG 1 cut(s) 4315
NgoMIV GCCGGC 1 cut(s) 147
NheI GCTAGC 1 cut(s) 1955
NmuCI GTSAC 6 cut(s) 949, 1051, 1180, 3304, 4147, 4163
NsiI ATGCAT 2 cut(s) 3549, 3817
NspI RCATGY 3 cut(s) 741, 2501, 2843
NspV TTCGAA 1 cut(s) 2405
PaeI GCATGC 1 cut(s) 2501
PagI TCATGA 4 cut(s) 706, 909, 2193, 3594
PauI GCGCGC 1 cut(s) 2223
PciI ACATGT 2 cut(s) 737, 2839
PciSI GCTCTTC 1 cut(s) 159
PcsI WCGNNNNNNNCGW 1 cut(s) 2205
PctI GAATGC 1 cut(s) 2188
PdiI GCCGGC 1 cut(s) 149
PdmI GAANNNNTTC 4 cut(s) 351, 2201, 3294, 4217
PflMI CCANNNNNTGG 1 cut(s) 3083
PfoI TCCNGGA 2 cut(s) 102, 2983
PleI GAGTC 4 cut(s) 1681, 1909, 2601, 2609
PmaCI CACGTG 1 cut(s) 1283
PmlI CACGTG 1 cut(s) 1283
PpsI GAGTC 4 cut(s) 1681, 1909, 2601, 2609
Ppu21I YACGTR 1 cut(s) 1283
PpuMI RGGWCCY 4 cut(s) 118, 611, 1873, 4288
PscI ACATGT 2 cut(s) 737, 2839
PshAI GACNNNNGTC 1 cut(s) 3602
PshBI ATTAAT 2 cut(s) 1755, 2247
PsiI TTATAA 1 cut(s) 1818
Psp124BI GAGCTC 2 cut(s) 171, 1519
Psp5II RGGWCCY 4 cut(s) 118, 611, 1873, 4288
Psp6I CCWGG 7 cut(s) 616, 2873, 3095, 3298, 3466, 3997, 4189
PspCI CACGTG 1 cut(s) 1283
PspFI CCCAGC 5 cut(s) 84, 653, 1522, 3788, 4284
PspGI CCWGG 7 cut(s) 616, 2873, 3095, 3298, 3466, 3997, 4189
PspPI GGNCC 8 cut(s) 118, 611, 1076, 1277, 1873, 3248, 3471, 4288
PspPPI RGGWCCY 4 cut(s) 118, 611, 1873, 4288
PsrI GAACNNNNNNTAC 2 cut(s) 680, 712
PstNI CAGNNNCTG 2 cut(s) 893, 4044
PsuI RGATCY 5 cut(s) 889, 1881, 2236, 3478, 3667
PteI GCGCGC 1 cut(s) 2223
PvuII CAGCTG 5 cut(s) 1526, 1952, 2582, 4234, 4271
RseI CAYNNNNRTG 3 cut(s) 3032, 3113, 3944
SacI GAGCTC 2 cut(s) 171, 1519
SalI GTCGAC 1 cut(s) 37
SapI GCTCTTC 1 cut(s) 159
Sau96I GGNCC 8 cut(s) 118, 611, 1076, 1277, 1873, 3248, 3471, 4288
ScaI AGTACT 1 cut(s) 3457
SchI GAGTC 4 cut(s) 1681, 1910, 2602, 2610
SduI GDGCHC 5 cut(s) 171, 466, 1519, 1738, 2332
SfaNI GCATC 9 cut(s) 213, 433, 803, 892, 1490, 2956, 3082, 3333, 4162
SfcI CTRYAG 2 cut(s) 498, 2256
SfuI TTCGAA 1 cut(s) 2405
SinI GGWCC 8 cut(s) 118, 611, 1076, 1277, 1873, 3248, 3471, 4288
SmiMI CAYNNNNRTG 3 cut(s) 3032, 3113, 3944
SmlI CTYRAG 5 cut(s) 965, 2276, 3347, 4155, 4223
SmoI CTYRAG 5 cut(s) 965, 2276, 3347, 4155, 4223
SpeI ACTAGT 1 cut(s) 941
SphI GCATGC 1 cut(s) 2501
SsiI CCGC 6 cut(s) 79, 122, 190, 3734, 3785, 4079
SspI AATATT 2 cut(s) 2306, 3284
SspMI CTAG 6 cut(s) 591, 831, 942, 1956, 2972, 3254
SstI GAGCTC 2 cut(s) 171, 1519
StyI CCWWGG 4 cut(s) 1273, 2135, 3474, 3712
TaiI ACGT 5 cut(s) 132, 1285, 2715, 4220, 4281
TaqI TCGA 9 cut(s) 38, 186, 240, 431, 1296, 2208, 2405, 2571, 2604
TaqII GACCGA 1 cut(s) 24
TatI WGTACW 3 cut(s) 1708, 3455, 3573
TauI GCSGC 2 cut(s) 193, 3788
TscAI CASTG 9 cut(s) 471, 789, 1680, 1704, 2013, 2644, 3141, 3148, 3468
TseFI GTSAC 6 cut(s) 949, 1051, 1180, 3304, 4147, 4163
Tsp45I GTSAC 6 cut(s) 949, 1051, 1180, 3304, 4147, 4163
TspGWI ACGGA 1 cut(s) 2870
TspRI CASTG 9 cut(s) 471, 789, 1680, 1704, 2013, 2644, 3141, 3148, 3468
Van91I CCANNNNNTGG 1 cut(s) 3083
Vha464I CTTAAG 2 cut(s) 2276, 4223
VpaK11BI GGWCC 8 cut(s) 118, 611, 1076, 1277, 1873, 3248, 3471, 4288
VspI ATTAAT 2 cut(s) 1755, 2247
XapI RAATTY 6 cut(s) 1104, 1298, 1724, 2201, 3917, 4048
XceI RCATGY 3 cut(s) 741, 2501, 2843
XmiI GTMKAC 2 cut(s) 38, 2850
XmnI GAANNNNTTC 4 cut(s) 351, 2201, 3294, 4217
XspI CTAG 6 cut(s) 591, 831, 942, 1956, 2972, 3254
ZraI GACGTC 1 cut(s) 2713
ZrmI AGTACT 1 cut(s) 3457
Zsp2I ATGCAT 2 cut(s) 3549, 3817
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.