Rh3AG177500
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
Physical Location & Seq
Reverse (-)
16569020 .. 16577801
8782 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG177500.1

Sequence Viewer

Length: 3657 bp
ATGGCGTTGGCTTTGGCCGGAGACGATCTGGCCCGGTCGACGAGCAGCCGGAGAAGCTTTGGTTCACATGGGAGCAAGCGGAGCTGGGCGTCCACAAGTTTCCGGGAGGTGTGGCAGGTCCCGCCGGACGTGTTCAACCGGAGTGGCCGGCAGGACGAGGATGAAGAGCTCCGGTGGGCCGCTATCGAGCGGCTTCCGACTTACGACAGACTTAGAAGAGGGATGCTCCGGCAGGTACTCGACAATGGACGAGTGGTTACTGATGAAGTGGATGTTACGAGGCTTGGAGTGCAAGACAAGAAGGTGTTGATGGAGAACATACTCAAAGTTGTGGAAGATGATAATGAAAAGTTTCTAAGGAGACTTAGAGACAGAACTGACAGAGTTGGGATTGAGATTCCGAAGATTGAAGTTAGATATGAGCATCTGTCGATTGAAGGAGATGTGTATGTTGGGAAAAGAGCACTGCCTACTCTGCTTAATGCTACCTTGAACACTATAGAGAGTGTTCTGGGTTTGATTCGTCTTGCTCCATCAAAGAAGAGAAAGATCCAGATACTTAAAGATGTTAATGGAATAGTCAAACCTTCTAGGATGACCCTACTTTTGGGTCCTCCAGGTGCAGGTAAAACAACATTGCTGTTGGCACTTGCTGGGAAGCTTGATGACGATCTAAGGGTATCTGGGAACATCACTTACTGTGGTCATGAATTGAGAGAGTTTGTTCCCCGAAGGACATGTGCTTATATCAGTCAACATGATCTTCACTATGGAGAAATGACAGTGAGGGAGACATTGGATTTTTCGGGACGATGCTTAGGTGTGGGGACTAGATATGAAATGCTGGCTGAACTTTCCAGAAGAGAAAAAGAAGCAGGAATCAAGCCGGATCCTGAGATTGATGCATTCATGAAAGCCACCTCAGTTTCAGGCCTGAAGACTAGTTTGGTCACAGATTATGTTATCAAGATTCTTGGTTTGGATATCTGTTCTGATATTATGGTTGGTGATGAAATGAGAAGGGGTATTTCTGGTGGCCAGAAAAAGCGTGTCACAACTGGGGAAATGTTGGTTGGACCAGCAAAGGTGCTTTTAATGGATGAAATTTCAACAGGGTTAGACAGTTCCACAACTTTTCAGATATGCAGGTACATGAGGCAAATGGTACATATAATGGATGTCACAATGGTCATCTCTCTTCTTCAACCAGCACCAGAGACATTTGAGCTGTTTGATGACCTTATCTTACTTTCAGAAGGTCAGATTGTGTACCACGGTCCGCGTGAGAGTGTTCTCGAGTTCTTTGAATACATGGGTTTCAAATGCCCGGAGAGGAAAGGAGTTGCTGACTTTTTGCAAGAAGTAACATCTAAGAAGGATCAAGAACAATACTGGTTCAAGAAAACCGAACCTTACAGATACATTGAAGTTGCTGAGTTTGTTGAGTGCTTCAACAATTTCCAATATGGCCAACAGATTGCATCAGAACTTGGGGTTCCTTATGAAAAGTCAAGAGCTCACCCAGCTGCATTAGTCAAAGAGAAATATGGTATTTCAAATTGGGAACTGTTCAAGGCTTGTTTTGCAAGGGAGTGGCTGCTAATGAAGCGCAATTCTTTTGTGTATGTATTCAAGACAACCCAGATAACAATTATGTCAGTAATTGCGTTCACAGTGTTCCTTAGGACTCAAATGCCAGTGGGAACTGTACAAGATGGAGGAAAATTTTTCGGAGCACTGTTTTTCAGTCTGATTAATGTCATGTTCAATGGAATGGCAGAACTGGCAATGACTGTTTTCAGGCTTCCTGTGTTTTATAAACAGAGGGATTTCTTGTTTTATCCTGCTTGGGCTTTTGGTTTTCCCATTTGGGTCCTTAGGATCCCCCTATCTTTAATGGAGTCGGCAATATGGATTGTTCTTACTTATTACACCATTGGATTTGCTCCAGCTGCTAGCAGATTTTTCAGACAGTTTTTGGCTTTTTTTGGCATTCATCAAATGGCACTGTCCCTCTTTCGGTTCATTGCTGCTCTTGGAAGAACACAAACGGTTGCAAATACTCTCGGTACCTTCACCTTGCTTATGGTGTTTGTTCTGGGAGGATTTATTGTTGCCAAAAATGACATTGAGCCTTGGATGATATGGGGCTACTATATATCTCCTATGATGTATGGACAGAATGCAATTGTCATGAACGAATTCCTCGATAAAAGATGGAGCGCGCGAAATACAGATCCAAGAATTAATGAACCTACAGTTGGGAAAGTCCTCCTTAAGTCCAGAGGATTCTTCACAGATGAATATTGGTTCTGGATATGTATTGGAGCACTATTTGGATTTTCTCTTCTCTTTAACATCTTATTCATTGCTGCATTGACTTTTCTGAATCCTCTTGGAGATTCGAAGGCTGTCATAGCTGATGAAAAAAGTGAGAAAAAGAAAAGGAAGTCATCAACTGAAGGTATTGATATGGCATTGAGGAGTTCTTCAGAGCATGCACCAACGAAAGGAATGGTTTTGCCCTTCCAACCCCTGTCACTCGCATTTAACCATGTGAACTACTATGTCGATATGCCAGCTGAAATGAAGAGTCAAGGAGTTGATCAAGATCGCCTTCAGCTCCTAAGAGATGTCAGTGGTGCTTTTAGACCAGGAGTATTGACAGCACTTGTAGGTGTTAGTGGTGCTGGAAAAACAACTCTTATGGATGTCTTGGCAGGAAGAAAGACAGGTGGTTATATTGAAGGAAGTATTAACATCTCCGGTTATCCAAAGAAACAAGACACATTTGCTCGTGTTAGTGGTTATTGTGAGCAGAATGACATCCATTCACCACATGTTACTGTATACGAATCTCTTCTGTATTCAGCCTGGCTCCGTCTTTCTTCAAATGTAAAGACCCGAACAAGAAAGATGTTTGTTGAGGAAGTCATGGAGTTGGTTGAGCTTAATCCCATTAGAGATGCTCTAGTTGGCCTTCCGGGAATAGATGGTCTTTCAACGGAACAAAGGAAGAGACTAACCATAGCCGTGGAGCTGGTAGCCAACCCCTCTATTATTTTCATGGATGAACCAACATCTGGACTTGATGCCAGGGCTGCTGCCATCGTTATGCGTACTGTGAGAAACACAGTGGACACTGGAAGAACTGTCGTCTGCACGATTCATCAGCCAAGCATAGATATTTTTGAAGCTTTTGATGAGCTGCTTCTGATGAAACGAGGAGGGCAAGTTATATATGCTGGACCTCTAGGTCGCCAATCTCACAAACTTGTAGAATATTTTGAAGCTGTTCCTGGGGTCACTAAGATTAAGGATGGTTACAATCCTGCTACATGGATGCTTGAGGTTACTGCTCCTTCAGTTGAGGCTCAACTGGATGTGGACTTTGCAGACATTTATGCCAATTCCTCACTTTACCAGAGGAATCAAGAGCTTATCGAAGAGCTTAGTACTCCGGTGCCAGGGTCCAAGGATCTCTACTTCCCAACCAAATACTCCCAACCATTCCCTGTTCAATGCAAAGCTTGTTTCTGGAAAATGCATTGGTCTTATTGGAGAAACCCCCAGTACAACGCCATCCGGTTCTTCATGACAATAGTCATTGGTGTTTTATTTGGTCTTATCTTCTGGAACAAGGGACAACAGACGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

1218

Amino Acids

138.03

Weight (kDa)

8.48

Isoelectric Point (pI)

41.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_trans_N PF14510 113 - 162 6.9e-09 ABC-transporter N-terminal
ABC_tran PF00005 187 - 369 8.9e-17 ABC transporter
ABC2_membrane_7 PF19055 402 - 454 5.9e-07 ABC-2 type transporter
ABC2_membrane PF01061 523 - 735 7.7e-47 ABC-2 type transporter
PDR_assoc PF08370 741 - 806 8.6e-28 Plant PDR ABC transporter associated
ABC_tran PF00005 876 - 1028 4.2e-21 ABC transporter
ABC2_membrane PF01061 1174 - 1215 3e-08 ABC-2 type transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000245)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66950 AT2G36380
fragaria_vesca FvH4_3g29700 FvH4_3g29700 FvH4_3g29700 FvH4_3g29700 FvH4_3g29710 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29760 FvH4_3g29781 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150
malus_domestica MD02G1254900.v1.1 MD03G1119400.v1.1 MD03G1136800.v1.1 MD03G1137000.v1.1 MD04G1187500.v1.1 MD08G1208900.v1.1 MD08G1209000.v1.1 MD11G1159000.v1.1 MD11G1159100.v1.1 MD11G1159200.v1.1 MD12G1020800.v1.1 MD12G1021000.v1.1 MD14G1017900.v1.1 MD14G1018100.v1.1
prunus_persica Prupe.2G084300_v2.0.a1 Prupe.2G084300_v2.0.a1 Prupe.6G121200_v2.0.a1 Prupe.6G121200_v2.0.a1 Prupe.6G121500_v2.0.a1 Prupe.6G121800_v2.0.a1 Prupe.6G121900_v2.0.a1 Prupe.6G122100_v2.0.a1 Prupe.7G115200_v2.0.a1 Prupe.7G115200_v2.0.a1
pyrus_communis pycom02g21460 pycom03g09270 pycom03g09290 pycom07g05130 pycom08g18050 pycom11g12950 pycom11g12960 pycom11g12970 pycom12g01950 pycom12g01980 pycom14g01620 pycom14g01710 pycom14g01720 pycom16g12190
rosa_chinensis RchiOBHm_Chr1g0340571 RchiOBHm_Chr2g0107751 RchiOBHm_Chr3g0472451 RchiOBHm_Chr5g0055051 RchiOBHm_Chr5g0055091 RchiOBHm_Chr5g0055111 RchiOBHm_Chr5g0055121 RchiOBHm_Chr5g0055131 RchiOBHm_Chr5g0062371 RchiOBHm_Chr6g0265121 RchiOBHm_Chr6g0275771 RchiOBHm_Chr7g0187231
rosa_laevigata RLG00000006319 RLG00000013820 RLG00000024078 RLG00000034960 RLG00000034963 RLG00000034965 RLG00000034966 RLG00000034968 RLG00000034970
rosa_multiflora Rmu_co8358859.1_g000001 Rmu_co8422375.1_g000001 Rmu_co8427767.1_g000001 Rmu_co8474941.1_g000001 Rmu_sc0000925.1_g000009 Rmu_sc0001694.1_g000015 Rmu_sc0001694.1_g000022 Rmu_sc0001694.1_g000024 Rmu_sc0001694.1_g000030 Rmu_sc0003993.1_g000001 Rmu_sc0010632.1_g000001 Rmu_sc0035175.1_g000001
rosa_roxburghii Rroxscaffold_1G00025230 Rroxscaffold_1G00025240 Rroxscaffold_1G00025300 Rroxscaffold_1G00025320 Rroxscaffold_1G00025330 Rroxscaffold_1G00025360 Rroxscaffold_1G00025440 Rroxscaffold_1G00033590 Rroxscaffold_6G00408900
rosa_rugosa Rorug03G0125500.1 Rorug03G0125600.1 Rorug05G0290600 Rorug05G0291100 Rorug05G0291200 Rorug05G0291300
rosa_samantha Rh1CG035400 Rh1CG243200 Rh2DG410600 Rh3AG177500 Rh3CG193800 Rh3CG200900 Rh3DG171700 Rh5AG043000 Rh5AG360500 Rh5AG360900 Rh5AG361000 Rh5AG361300 Rh5AG441100 Rh5CG393700 Rh5CG393900 Rh5CG394200 Rh5DG247300 Rh5DG385200 Rh5DG385500 Rh5DG385800 Rh6BG272200 Rh6DG204000 Rh7AG084700 Rh7AG178300
rosa_wichuraiana Rw0G022120 Rw3G016410 Rw5G033910 Rw5G033920 Rw5G033940 Rw5G033960 Rw5G033970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1818
AasI GACNNNNNNGTC 1 cut(s) 3255
Acc36I ACCTGC 4 cut(s) 106, 223, 614, 1137
Acc65I GGTACC 1 cut(s) 2069
AccB1I GGYRCC 2 cut(s) 2069, 3463
AccB7I CCANNNNNTGG 1 cut(s) 3083
AccBSI CCGCTC 1 cut(s) 190
AccI GTMKAC 2 cut(s) 38, 2850
AccII CGCG 3 cut(s) 1282, 2225, 2227
AciI CCGC 5 cut(s) 79, 122, 180, 190, 1280
AclWI GGATC 8 cut(s) 544, 884, 897, 1386, 1876, 1889, 2231, 3486
AcoI YGGCCR 4 cut(s) 15, 145, 1036, 1468
AcsI RAATTY 3 cut(s) 1104, 1724, 2201
AcuI CTGAAG 5 cut(s) 956, 2475, 2481, 2603, 3348
AcyI GRCGYC 1 cut(s) 89
AfaI GTAC 9 cut(s) 237, 1151, 1167, 1271, 1710, 2071, 3121, 3457, 3575
AfiI CCNNNNNNNGG 7 cut(s) 607, 623, 2019, 2261, 2510, 3083, 3467
AflII CTTAAG 1 cut(s) 2276
AflIII ACRYGT 3 cut(s) 129, 737, 2839
AhlI ACTAGT 1 cut(s) 941
AjiI CACGTC 1 cut(s) 130
AjnI CCWGG 6 cut(s) 616, 2653, 2873, 3095, 3298, 3466
AjuI GAANNNNNNNTTGG 6 cut(s) 929, 961, 1056, 1088, 2244, 2276
Alw21I GWGCWC 5 cut(s) 171, 466, 1519, 1738, 2332
Alw26I GTCTC 6 cut(s) 15, 355, 363, 785, 1211, 3013
AlwI GGATC 8 cut(s) 544, 884, 897, 1386, 1876, 1889, 2231, 3486
Ama87I CYCGRG 1 cut(s) 1295
AoxI GGCC 8 cut(s) 15, 30, 145, 177, 931, 1036, 1468, 2977
ApeKI GCWGC 9 cut(s) 45, 1526, 1597, 1952, 2030, 2372, 3101, 3104, 3208
ApoI RAATTY 3 cut(s) 1104, 1724, 2201
ArsI GACNNNNNNTTYG 2 cut(s) 589, 621
AseI ATTAAT 2 cut(s) 1755, 2247
Asp700I GAANNNNTTC 4 cut(s) 351, 2201, 2859, 3294
Asp718I GGTACC 1 cut(s) 2069
AspLEI GCGC 3 cut(s) 1611, 2225, 2227
AspS9I GGNCC 9 cut(s) 31, 118, 177, 611, 1076, 1277, 1873, 3248, 3471
AsuC2I CCSGG 4 cut(s) 34, 104, 1328, 2985
AsuHPI GGTGA 4 cut(s) 1019, 1511, 2068, 2826
AsuII TTCGAA 1 cut(s) 2405
AsuNHI GCTAGC 1 cut(s) 1955
AvaI CYCGRG 1 cut(s) 1295
AvaII GGWCC 7 cut(s) 118, 611, 1076, 1277, 1873, 3248, 3471
AxyI CCTNAGG 2 cut(s) 1682, 1877
BalI TGGCCA 2 cut(s) 1038, 1470
BamHI GGATCC 2 cut(s) 889, 1881
BanI GGYRCC 2 cut(s) 2069, 3463
BanII GRGCYC 2 cut(s) 171, 1519
BauI CACGAG 1 cut(s) 2796
BbsI GAAGAC 1 cut(s) 944
Bbv12I GWGCWC 5 cut(s) 171, 466, 1519, 1738, 2332
BbvI GCAGC 9 cut(s) 57, 1513, 1584, 1939, 2017, 2359, 3088, 3091, 3195
BccI CCATC 8 cut(s) 304, 541, 1709, 2211, 2987, 3116, 3314, 3590
BceAI ACGGC 1 cut(s) 3017
BciT130I CCWGG 6 cut(s) 618, 2655, 2875, 3097, 3300, 3468
BclI TGATCA 1 cut(s) 2605
BcnI CCSGG 4 cut(s) 34, 104, 1328, 2985
BcoDI GTCTC 6 cut(s) 15, 355, 363, 785, 1211, 3013
BcuI ACTAGT 1 cut(s) 941
BfaI CTAG 6 cut(s) 591, 831, 942, 1956, 2972, 3254
BfmI CTRYAG 2 cut(s) 498, 2256
BfrI CTTAAG 1 cut(s) 2276
BfuAI ACCTGC 4 cut(s) 106, 223, 614, 1137
BmcAI AGTACT 1 cut(s) 3457
Bme18I GGWCC 7 cut(s) 118, 611, 1076, 1277, 1873, 3248, 3471
BmeT110I CYCGRG 1 cut(s) 1295
BmgBI CACGTC 1 cut(s) 130
BmgT120I GGNCC 9 cut(s) 31, 118, 177, 611, 1076, 1277, 1873, 3248, 3471
BmrI ACTGGG 2 cut(s) 1068, 3565
BmsI GCATC 8 cut(s) 213, 433, 803, 892, 1490, 2956, 3082, 3333
BmtI GCTAGC 1 cut(s) 1959
BmuI ACTGGG 2 cut(s) 1068, 3565
BoxI GACNNNNGTC 1 cut(s) 3602
BpiI GAAGAC 1 cut(s) 944
BplI GAGNNNNNCTC 2 cut(s) 210, 242
BpmI CTGGAG 2 cut(s) 600, 1932
Bpu10I CCTNAGC 1 cut(s) 817
Bpu14I TTCGAA 1 cut(s) 2405
BpuEI CTTGAG 1 cut(s) 3368
BpuMI CCSGG 4 cut(s) 34, 104, 1328, 2985
BsaBI GATNNNNATC 2 cut(s) 669, 2610
BsaHI GRCGYC 1 cut(s) 89
BsaJI CCNNGG 7 cut(s) 1273, 2135, 3033, 3096, 3299, 3467, 3474
BsaWI WCCGGW 5 cut(s) 138, 171, 2765, 3460, 3585
BsaXI ACNNNNNCTCC 2 cut(s) 3219, 3249
Bsc4I CCNNNNNNNGG 7 cut(s) 607, 623, 2019, 2261, 2510, 3083, 3467
Bse118I RCCGGY 1 cut(s) 147
Bse1I ACTGG 7 cut(s) 1063, 1397, 1697, 1788, 3148, 3384, 3571
Bse21I CCTNAGG 2 cut(s) 1682, 1877
Bse3DI GCAATG 4 cut(s) 635, 1794, 2025, 2367
Bse8I GATNNNNATC 2 cut(s) 669, 2610
BseBI CCWGG 6 cut(s) 618, 2655, 2875, 3097, 3300, 3468
BseDI CCNNGG 7 cut(s) 1273, 2135, 3033, 3096, 3299, 3467, 3474
BseJI GATNNNNATC 2 cut(s) 669, 2610
BseLI CCNNNNNNNGG 7 cut(s) 607, 623, 2019, 2261, 2510, 3083, 3467
BseMI GCAATG 4 cut(s) 635, 1794, 2025, 2367
BseMII CTCAG 3 cut(s) 885, 936, 1425
BseNI ACTGG 7 cut(s) 1063, 1397, 1697, 1788, 3148, 3384, 3571
BsePI GCGCGC 1 cut(s) 2223
BseRI GAGGAG 2 cut(s) 2497, 3240
BseXI GCAGC 9 cut(s) 57, 1513, 1584, 1939, 2017, 2359, 3088, 3091, 3195
BseYI CCCAGC 3 cut(s) 84, 653, 1522
BsgI GTGCAG 2 cut(s) 642, 3145
Bsh1236I CGCG 3 cut(s) 1282, 2225, 2227
Bsh1285I CGRYCG 1 cut(s) 38
BshFI GGCC 8 cut(s) 17, 32, 147, 179, 933, 1038, 1470, 2979
BshNI GGYRCC 2 cut(s) 2069, 3463
BsiEI CGRYCG 1 cut(s) 38
BsiHKAI GWGCWC 5 cut(s) 171, 466, 1519, 1738, 2332
BsiHKCI CYCGRG 1 cut(s) 1295
BslFI GGGAC 4 cut(s) 104, 822, 841, 1996
BslI CCNNNNNNNGG 7 cut(s) 607, 623, 2019, 2261, 2510, 3083, 3467
BsmAI GTCTC 6 cut(s) 15, 355, 363, 785, 1211, 3013
BsmBI CGTCTC 1 cut(s) 15
BsmFI GGGAC 4 cut(s) 104, 822, 841, 1996
BsmI GAATGC 3 cut(s) 905, 1992, 2188
BsnI GGCC 8 cut(s) 17, 32, 147, 179, 933, 1038, 1470, 2979
BsoBI CYCGRG 1 cut(s) 1295
Bsp119I TTCGAA 1 cut(s) 2405
Bsp1286I GDGCHC 5 cut(s) 171, 466, 1519, 1738, 2332
Bsp1407I TGTACA 1 cut(s) 1708
BspACI CCGC 5 cut(s) 79, 122, 180, 190, 1280
BspANI GGCC 8 cut(s) 17, 32, 147, 179, 933, 1038, 1470, 2979
BspCNI CTCAG 3 cut(s) 886, 935, 1426
BspFNI CGCG 3 cut(s) 1282, 2225, 2227
BspHI TCATGA 4 cut(s) 706, 909, 2193, 3594
BspMI ACCTGC 4 cut(s) 106, 223, 614, 1137
BspOI GCTAGC 1 cut(s) 1959
BspPI GGATC 8 cut(s) 544, 884, 897, 1386, 1876, 1889, 2231, 3486
BspQI GCTCTTC 2 cut(s) 159, 3441
BspT104I TTCGAA 1 cut(s) 2405
BspT107I GGYRCC 2 cut(s) 2069, 3463
BspTI CTTAAG 1 cut(s) 2276
BsrBI CCGCTC 1 cut(s) 190
BsrDI GCAATG 4 cut(s) 635, 1794, 2025, 2367
BsrFI RCCGGY 1 cut(s) 147
BsrGI TGTACA 1 cut(s) 1708
BsrI ACTGG 7 cut(s) 1063, 1397, 1697, 1788, 3148, 3384, 3571
BssAI RCCGGY 1 cut(s) 147
BssECI CCNNGG 7 cut(s) 1273, 2135, 3033, 3096, 3299, 3467, 3474
BssHII GCGCGC 1 cut(s) 2223
BssNAI GTATAC 1 cut(s) 2851
BssNI GRCGYC 1 cut(s) 89
BssSI CACGAG 1 cut(s) 2796
BssT1I CCWWGG 2 cut(s) 2135, 3474
Bst1107I GTATAC 1 cut(s) 2851
Bst2BI CACGAG 1 cut(s) 2796
Bst2UI CCWGG 6 cut(s) 618, 2655, 2875, 3097, 3300, 3468
BstACI GRCGYC 1 cut(s) 89
BstAFI CTTAAG 1 cut(s) 2276
BstAUI TGTACA 1 cut(s) 1708
BstBI TTCGAA 1 cut(s) 2405
BstC8I GCNNGC 7 cut(s) 77, 149, 846, 1957, 2225, 2499, 2580
BstDSI CCRYGG 2 cut(s) 1273, 3033
BstFNI CGCG 3 cut(s) 1282, 2225, 2227
BstHHI GCGC 3 cut(s) 1611, 2225, 2227
BstMAI GTCTC 6 cut(s) 15, 355, 363, 785, 1211, 3013
BstMCI CGRYCG 1 cut(s) 38
BstNI CCWGG 6 cut(s) 618, 2655, 2875, 3097, 3300, 3468
BstNSI RCATGY 3 cut(s) 741, 2501, 2843
BstPAI GACNNNNGTC 1 cut(s) 3602
BstSFI CTRYAG 2 cut(s) 498, 2256
BstUI CGCG 3 cut(s) 1282, 2225, 2227
BstV1I GCAGC 9 cut(s) 57, 1513, 1584, 1939, 2017, 2359, 3088, 3091, 3195
BstV2I GAAGAC 1 cut(s) 944
BstX2I RGATCY 5 cut(s) 549, 889, 1881, 2236, 3478
BstXI CCANNNNNNTGG 1 cut(s) 3034
BstYI RGATCY 5 cut(s) 549, 889, 1881, 2236, 3478
BstZ17I GTATAC 1 cut(s) 2851
Bsu36I CCTNAGG 2 cut(s) 1682, 1877
BsuRI GGCC 8 cut(s) 17, 32, 147, 179, 933, 1038, 1470, 2979
BtgI CCRYGG 2 cut(s) 1273, 3033
BtrI CACGTC 1 cut(s) 130
BtsI GCAGTG 1 cut(s) 464
BtsIMutI CAGTG 9 cut(s) 464, 789, 1680, 1704, 1736, 2006, 2644, 3141, 3141
BveI ACCTGC 4 cut(s) 106, 223, 614, 1137
Cac8I GCNNGC 7 cut(s) 77, 149, 846, 1957, 2225, 2499, 2580
CciI TCATGA 4 cut(s) 706, 909, 2193, 3594
CfoI GCGC 3 cut(s) 1611, 2225, 2227
Cfr10I RCCGGY 1 cut(s) 147
Cfr13I GGNCC 9 cut(s) 31, 118, 177, 611, 1076, 1277, 1873, 3248, 3471
CpoI CGGWCCG 1 cut(s) 1277
CseI GACGC 1 cut(s) 78
Csp6I GTAC 9 cut(s) 236, 1150, 1166, 1270, 1709, 2070, 3120, 3456, 3574
CspCI CAANNNNNGTGG 2 cut(s) 124, 159
CspI CGGWCCG 1 cut(s) 1277
CviQI GTAC 9 cut(s) 236, 1150, 1166, 1270, 1709, 2070, 3120, 3456, 3574
DrdI GACNNNNNNGTC 1 cut(s) 3255
DseDI GACNNNNNNGTC 1 cut(s) 3255
EaeI YGGCCR 4 cut(s) 15, 145, 1036, 1468
Ecl136II GAGCTC 2 cut(s) 169, 1517
Eco130I CCWWGG 2 cut(s) 2135, 3474
Eco147I AGGCCT 1 cut(s) 933
Eco24I GRGCYC 2 cut(s) 171, 1519
Eco32I GATATC 1 cut(s) 985
Eco47I GGWCC 7 cut(s) 118, 611, 1076, 1277, 1873, 3248, 3471
Eco53kI GAGCTC 2 cut(s) 169, 1517
Eco57I CTGAAG 5 cut(s) 956, 2475, 2481, 2603, 3348
Eco81I CCTNAGG 2 cut(s) 1682, 1877
Eco88I CYCGRG 1 cut(s) 1295
EcoICRI GAGCTC 2 cut(s) 169, 1517
EcoO109I RGGNCCY 3 cut(s) 118, 611, 1873
EcoRI GAATTC 1 cut(s) 2201
EcoRII CCWGG 6 cut(s) 616, 2653, 2873, 3095, 3298, 3466
EcoRV GATATC 1 cut(s) 985
EcoT14I CCWWGG 2 cut(s) 2135, 3474
EcoT22I ATGCAT 2 cut(s) 907, 3549
EcoT38I GRGCYC 2 cut(s) 171, 1519
ErhI CCWWGG 2 cut(s) 2135, 3474
Esp3I CGTCTC 1 cut(s) 15
FalI AAGNNNNNCTT 4 cut(s) 2259, 2291, 2601, 2633
FaqI GGGAC 4 cut(s) 104, 822, 841, 1996
FauI CCCGC 1 cut(s) 129
FbaI TGATCA 1 cut(s) 2605
FblI GTMKAC 2 cut(s) 38, 2850
FriOI GRGCYC 2 cut(s) 171, 1519
FspBI CTAG 6 cut(s) 591, 831, 942, 1956, 2972, 3254
GlaI GCGC 3 cut(s) 1610, 2224, 2226
GsaI CCCAGC 3 cut(s) 88, 657, 1526
GsuI CTGGAG 2 cut(s) 600, 1932
HaeIII GGCC 8 cut(s) 17, 32, 147, 179, 933, 1038, 1470, 2979
HgaI GACGC 1 cut(s) 78
HhaI GCGC 3 cut(s) 1611, 2225, 2227
Hin1I GRCGYC 1 cut(s) 89
Hin6I GCGC 3 cut(s) 1609, 2223, 2225
HinP1I GCGC 3 cut(s) 1609, 2223, 2225
HincII GTYRAC 2 cut(s) 39, 755
HindII GTYRAC 2 cut(s) 39, 755
HindIII AAGCTT 4 cut(s) 55, 659, 3195, 3528
HphI GGTGA 4 cut(s) 1019, 1511, 2068, 2826
Hpy99I CGWCG 1 cut(s) 43
HpyCH4IV ACGT 2 cut(s) 129, 3653
HpySE526I ACGT 2 cut(s) 129, 3653
Hsp92I GRCGYC 1 cut(s) 89
HspAI GCGC 3 cut(s) 1609, 2223, 2225
KpnI GGTACC 1 cut(s) 2073
KroI GCCGGC 1 cut(s) 147
KroNI GCCGGC 1 cut(s) 149
Ksp22I TGATCA 1 cut(s) 2605
LguI GCTCTTC 2 cut(s) 159, 3441
Lsp1109I GCAGC 9 cut(s) 57, 1513, 1584, 1939, 2017, 2359, 3088, 3091, 3195
LweI GCATC 8 cut(s) 213, 433, 803, 892, 1490, 2956, 3082, 3333
MaeI CTAG 6 cut(s) 591, 831, 942, 1956, 2972, 3254
MaeII ACGT 2 cut(s) 129, 3653
MbiI CCGCTC 1 cut(s) 190
MfeI CAATTG 1 cut(s) 2187
MflI RGATCY 5 cut(s) 549, 889, 1881, 2236, 3478
MhlI GDGCHC 5 cut(s) 171, 466, 1519, 1738, 2332
MlsI TGGCCA 2 cut(s) 1038, 1470
MluNI TGGCCA 2 cut(s) 1038, 1470
MlyI GAGTC 3 cut(s) 1681, 1910, 2602
MmeI TCCRAC 3 cut(s) 221, 1054, 2554
Mox20I TGGCCA 2 cut(s) 1038, 1470
Mph1103I ATGCAT 2 cut(s) 907, 3549
MroNI GCCGGC 1 cut(s) 147
MroXI GAANNNNTTC 4 cut(s) 351, 2201, 2859, 3294
MscI TGGCCA 2 cut(s) 1038, 1470
MslI CAYNNNNRTG 2 cut(s) 3032, 3113
Msp20I TGGCCA 2 cut(s) 1038, 1470
MspA1I CMGCKG 3 cut(s) 1526, 1952, 2582
MspCI CTTAAG 1 cut(s) 2276
MunI CAATTG 1 cut(s) 2187
Mva1269I GAATGC 3 cut(s) 905, 1992, 2188
MvaI CCWGG 6 cut(s) 618, 2655, 2875, 3097, 3300, 3468
MvnI CGCG 3 cut(s) 1282, 2225, 2227
NaeI GCCGGC 1 cut(s) 149
NciI CCSGG 4 cut(s) 34, 104, 1328, 2985
NgoMIV GCCGGC 1 cut(s) 147
NheI GCTAGC 1 cut(s) 1955
NmuCI GTSAC 5 cut(s) 949, 1051, 1180, 2538, 3304
NsiI ATGCAT 2 cut(s) 907, 3549
NspI RCATGY 3 cut(s) 741, 2501, 2843
NspV TTCGAA 1 cut(s) 2405
PaeI GCATGC 1 cut(s) 2501
PaeR7I CTCGAG 1 cut(s) 1295
PagI TCATGA 4 cut(s) 706, 909, 2193, 3594
PauI GCGCGC 1 cut(s) 2223
PceI AGGCCT 1 cut(s) 933
PciI ACATGT 2 cut(s) 737, 2839
PciSI GCTCTTC 2 cut(s) 159, 3441
PcsI WCGNNNNNNNCGW 1 cut(s) 2205
PctI GAATGC 3 cut(s) 905, 1992, 2188
PdiI GCCGGC 1 cut(s) 149
PdmI GAANNNNTTC 4 cut(s) 351, 2201, 2859, 3294
PflMI CCANNNNNTGG 1 cut(s) 3083
PfoI TCCNGGA 2 cut(s) 102, 2983
PleI GAGTC 3 cut(s) 1681, 1909, 2601
PpsI GAGTC 3 cut(s) 1681, 1909, 2601
PpuMI RGGWCCY 3 cut(s) 118, 611, 1873
PscI ACATGT 2 cut(s) 737, 2839
PshAI GACNNNNGTC 1 cut(s) 3602
PshBI ATTAAT 2 cut(s) 1755, 2247
PsiI TTATAA 1 cut(s) 1818
Psp124BI GAGCTC 2 cut(s) 171, 1519
Psp5II RGGWCCY 3 cut(s) 118, 611, 1873
Psp6I CCWGG 6 cut(s) 616, 2653, 2873, 3095, 3298, 3466
PspFI CCCAGC 3 cut(s) 84, 653, 1522
PspGI CCWGG 6 cut(s) 616, 2653, 2873, 3095, 3298, 3466
PspPI GGNCC 9 cut(s) 31, 118, 177, 611, 1076, 1277, 1873, 3248, 3471
PspPPI RGGWCCY 3 cut(s) 118, 611, 1873
PsrI GAACNNNNNNTAC 2 cut(s) 680, 712
PsuI RGATCY 5 cut(s) 549, 889, 1881, 2236, 3478
PteI GCGCGC 1 cut(s) 2223
PvuII CAGCTG 3 cut(s) 1526, 1952, 2582
RsaI GTAC 9 cut(s) 237, 1151, 1167, 1271, 1710, 2071, 3121, 3457, 3575
RsaNI GTAC 9 cut(s) 236, 1150, 1166, 1270, 1709, 2070, 3120, 3456, 3574
RseI CAYNNNNRTG 2 cut(s) 3032, 3113
Rsr2I CGGWCCG 1 cut(s) 1277
RsrII CGGWCCG 1 cut(s) 1277
SacI GAGCTC 2 cut(s) 171, 1519
SalI GTCGAC 1 cut(s) 37
SapI GCTCTTC 2 cut(s) 159, 3441
Sau96I GGNCC 9 cut(s) 31, 118, 177, 611, 1076, 1277, 1873, 3248, 3471
ScaI AGTACT 1 cut(s) 3457
SchI GAGTC 3 cut(s) 1681, 1910, 2602
SduI GDGCHC 5 cut(s) 171, 466, 1519, 1738, 2332
SfaNI GCATC 8 cut(s) 213, 433, 803, 892, 1490, 2956, 3082, 3333
SfcI CTRYAG 2 cut(s) 498, 2256
Sfr274I CTCGAG 1 cut(s) 1295
SfuI TTCGAA 1 cut(s) 2405
SinI GGWCC 7 cut(s) 118, 611, 1076, 1277, 1873, 3248, 3471
SlaI CTCGAG 1 cut(s) 1295
SmiMI CAYNNNNRTG 2 cut(s) 3032, 3113
SmlI CTYRAG 3 cut(s) 1295, 2276, 3347
SmoI CTYRAG 3 cut(s) 1295, 2276, 3347
SpeI ACTAGT 1 cut(s) 941
SphI GCATGC 1 cut(s) 2501
SseBI AGGCCT 1 cut(s) 933
SsiI CCGC 5 cut(s) 79, 122, 180, 190, 1280
SspI AATATT 2 cut(s) 2306, 3284
SspMI CTAG 6 cut(s) 591, 831, 942, 1956, 2972, 3254
SstI GAGCTC 2 cut(s) 171, 1519
StuI AGGCCT 1 cut(s) 933
StyI CCWWGG 2 cut(s) 2135, 3474
TaiI ACGT 2 cut(s) 132, 3656
TaqI TCGA 9 cut(s) 38, 186, 240, 431, 1296, 2208, 2405, 2571, 3444
TatI WGTACW 3 cut(s) 1708, 3455, 3573
TauI GCSGC 2 cut(s) 182, 193
TscAI CASTG 9 cut(s) 471, 789, 1680, 1704, 1743, 2013, 2644, 3141, 3148
TseFI GTSAC 5 cut(s) 949, 1051, 1180, 2538, 3304
TseI GCWGC 9 cut(s) 45, 1526, 1597, 1952, 2030, 2372, 3101, 3104, 3208
Tsp45I GTSAC 5 cut(s) 949, 1051, 1180, 2538, 3304
TspGWI ACGGA 2 cut(s) 2870, 3020
TspRI CASTG 9 cut(s) 471, 789, 1680, 1704, 1743, 2013, 2644, 3141, 3148
Van91I CCANNNNNTGG 1 cut(s) 3083
Vha464I CTTAAG 1 cut(s) 2276
VpaK11BI GGWCC 7 cut(s) 118, 611, 1076, 1277, 1873, 3248, 3471
VspI ATTAAT 2 cut(s) 1755, 2247
XapI RAATTY 3 cut(s) 1104, 1724, 2201
XceI RCATGY 3 cut(s) 741, 2501, 2843
XhoI CTCGAG 1 cut(s) 1295
XmiI GTMKAC 2 cut(s) 38, 2850
XmnI GAANNNNTTC 4 cut(s) 351, 2201, 2859, 3294
XspI CTAG 6 cut(s) 591, 831, 942, 1956, 2972, 3254
ZrmI AGTACT 1 cut(s) 3457
Zsp2I ATGCAT 2 cut(s) 907, 3549
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.