Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0000245

Physical Location & Seq

Genomic Coordinates Reverse (-)

6806394 .. 6810320

Gene Structure 3927 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG035400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGAAGGCTCTATTTCAAGGGCTTAGATCAATTGGAACCTCATTTGATGAAGGTCGTTGGTTCTGCTTTGATGAAGGCTTTAGTCTTCTTAGTCGCCGCTGCCAGAAGCTAGAGAAACAAAAGCGACGATGCAATGCCATCAGGTTTTTCACCACAATACTCATCGGCGTACTTTTTGGTGTCATCTTCTGGAAGAAAGGAAACGTGTTAGGGAAACAACAAGATATTGTTAACCTTCTGGGAGCAACCTATTCTGCTGTTCTTTTCCTTGGAGCGGGAAATGCTTCTGCTGTGCAATCTGTGGTTGCGATTGAGAGAACAGTTTTCTACCGAGAAAGAGCAGCAGGAATGTATTCAGAGTTGCCTTATGCATTTTCTCAGGGGTGGAGATCATGTGCAGTGACCACGCTGGGTAGAGATGGTAGTGATTTGACGGCTACAACCATTGGTAAAGCACGTTGGCAGGAACTTGACCATGTTGTGGAAGACCTGGAGAAAATTGTTGTTGTCAATCTTCAACACCGATCAATAATATCTCTCATTGGAAATGTGCAGGAATCATCACTAATATTAGAGAAGGTGTTGTATTGTGTTGGGCCAAGTACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031224 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

202

Amino Acids

22.52

Weight (kDa)

9.18

Isoelectric Point (pI)

51.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC2_membrane	PF01061	27 - 127	1e-16	ABC-2 type transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000245)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66950 AT2G36380
fragaria_vesca	FvH4_3g29700 FvH4_3g29700 FvH4_3g29700 FvH4_3g29700 FvH4_3g29710 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29760 FvH4_3g29781 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150
malus_domestica	MD02G1254900.v1.1 MD03G1119400.v1.1 MD03G1136800.v1.1 MD03G1137000.v1.1 MD04G1187500.v1.1 MD08G1208900.v1.1 MD08G1209000.v1.1 MD11G1159000.v1.1 MD11G1159100.v1.1 MD11G1159200.v1.1 MD12G1020800.v1.1 MD12G1021000.v1.1 MD14G1017900.v1.1 MD14G1018100.v1.1
prunus_persica	Prupe.2G084300_v2.0.a1 Prupe.2G084300_v2.0.a1 Prupe.6G121200_v2.0.a1 Prupe.6G121200_v2.0.a1 Prupe.6G121500_v2.0.a1 Prupe.6G121800_v2.0.a1 Prupe.6G121900_v2.0.a1 Prupe.6G122100_v2.0.a1 Prupe.7G115200_v2.0.a1 Prupe.7G115200_v2.0.a1
pyrus_communis	pycom02g21460 pycom03g09270 pycom03g09290 pycom07g05130 pycom08g18050 pycom11g12950 pycom11g12960 pycom11g12970 pycom12g01950 pycom12g01980 pycom14g01620 pycom14g01710 pycom14g01720 pycom16g12190
rosa_chinensis	RchiOBHm_Chr1g0340571 RchiOBHm_Chr2g0107751 RchiOBHm_Chr3g0472451 RchiOBHm_Chr5g0055051 RchiOBHm_Chr5g0055091 RchiOBHm_Chr5g0055111 RchiOBHm_Chr5g0055121 RchiOBHm_Chr5g0055131 RchiOBHm_Chr5g0062371 RchiOBHm_Chr6g0265121 RchiOBHm_Chr6g0275771 RchiOBHm_Chr7g0187231
rosa_laevigata	RLG00000006319 RLG00000013820 RLG00000024078 RLG00000034960 RLG00000034963 RLG00000034965 RLG00000034966 RLG00000034968 RLG00000034970
rosa_multiflora	Rmu_co8358859.1_g000001 Rmu_co8422375.1_g000001 Rmu_co8427767.1_g000001 Rmu_co8474941.1_g000001 Rmu_sc0000925.1_g000009 Rmu_sc0001694.1_g000015 Rmu_sc0001694.1_g000022 Rmu_sc0001694.1_g000024 Rmu_sc0001694.1_g000030 Rmu_sc0003993.1_g000001 Rmu_sc0010632.1_g000001 Rmu_sc0035175.1_g000001
rosa_roxburghii	Rroxscaffold_1G00025230 Rroxscaffold_1G00025240 Rroxscaffold_1G00025300 Rroxscaffold_1G00025320 Rroxscaffold_1G00025330 Rroxscaffold_1G00025360 Rroxscaffold_1G00025440 Rroxscaffold_1G00033590 Rroxscaffold_6G00408900
rosa_rugosa	Rorug03G0125500.1 Rorug03G0125600.1 Rorug05G0290600 Rorug05G0291100 Rorug05G0291200 Rorug05G0291300
rosa_samantha	Rh1CG035400 Rh1CG243200 Rh2DG410600 Rh3AG177500 Rh3CG193800 Rh3CG200900 Rh3DG171700 Rh5AG043000 Rh5AG360500 Rh5AG360900 Rh5AG361000 Rh5AG361300 Rh5AG441100 Rh5CG393700 Rh5CG393900 Rh5CG394200 Rh5DG247300 Rh5DG385200 Rh5DG385500 Rh5DG385800 Rh6BG272200 Rh6DG204000 Rh7AG084700 Rh7AG178300
rosa_wichuraiana	Rw0G022120 Rw3G016410 Rw5G033910 Rw5G033920 Rw5G033940 Rw5G033960 Rw5G033970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	481
AccBSI	CCGCTC	1 cut(s)	275
AciI	CCGC	2 cut(s)	97, 275
AfaI	GTAC	2 cut(s)	171, 604
AfiI	CCNNNNNNNGG	2 cut(s)	274, 481
AflIII	ACRYGT	1 cut(s)	204
AgsI	TTSAA	2 cut(s)	17, 518
AjnI	CCWGG	1 cut(s)	489
AluBI	AGCT	1 cut(s)	109
AluI	AGCT	1 cut(s)	109
AoxI	GGCC	1 cut(s)	596
ApeKI	GCWGC	2 cut(s)	99, 341
Asp700I	GAANNNNTTC	2 cut(s)	283, 352
AspS9I	GGNCC	1 cut(s)	596
AsuHPI	GGTGA	1 cut(s)	142
BbsI	GAAGAC	2 cut(s)	77, 492
BbvI	GCAGC	2 cut(s)	86, 353
BccI	CCATC	2 cut(s)	146, 413
BceAI	ACGGC	1 cut(s)	450
BciT130I	CCWGG	1 cut(s)	491
BfaI	CTAG	1 cut(s)	110
BisI	GCNGC	3 cut(s)	97, 100, 342
BlsI	GCNGC	3 cut(s)	98, 101, 343
BmcAI	AGTACT	1 cut(s)	604
Bme1390I	CCNGG	1 cut(s)	491
BmgT120I	GGNCC	1 cut(s)	596
BmiI	GGNNCC	1 cut(s)	37
BmrFI	CCNGG	1 cut(s)	491
BmsI	GCATC	1 cut(s)	119
BpiI	GAAGAC	2 cut(s)	77, 492
BpmI	CTGGAG	1 cut(s)	512
BsaJI	CCNNGG	1 cut(s)	268
BsaXI	ACNNNNNCTCC	2 cut(s)	379, 409
Bsc4I	CCNNNNNNNGG	2 cut(s)	274, 481
Bse3DI	GCAATG	1 cut(s)	139
BseBI	CCWGG	1 cut(s)	491
BseDI	CCNNGG	1 cut(s)	268
BseLI	CCNNNNNNNGG	2 cut(s)	274, 481
BseMI	GCAATG	1 cut(s)	139
BseMII	CTCAG	1 cut(s)	392
BseXI	GCAGC	2 cut(s)	86, 353
BseYI	CCCAGC	1 cut(s)	409
BsgI	GTGCAG	2 cut(s)	417, 572
BshFI	GGCC	1 cut(s)	598
BslI	CCNNNNNNNGG	2 cut(s)	274, 481
BsnI	GGCC	1 cut(s)	598
Bsp143I	GATC	3 cut(s)	26, 389, 524
BspACI	CCGC	2 cut(s)	97, 275
BspANI	GGCC	1 cut(s)	598
BspCNI	CTCAG	1 cut(s)	391
BspLI	GGNNCC	1 cut(s)	37
BsrBI	CCGCTC	1 cut(s)	275
BsrDI	GCAATG	1 cut(s)	139
BssECI	CCNNGG	1 cut(s)	268
BssMI	GATC	3 cut(s)	26, 389, 524
BssT1I	CCWWGG	1 cut(s)	268
Bst2UI	CCWGG	1 cut(s)	491
Bst4CI	ACNGT	1 cut(s)	322
BstDEI	CTNAG	4 cut(s)	23, 89, 378, 606
BstKTI	GATC	3 cut(s)	29, 392, 527
BstMBI	GATC	3 cut(s)	26, 389, 524
BstMWI	GCNNNNNNNGC	1 cut(s)	281
BstNI	CCWGG	1 cut(s)	491
BstSCI	CCNGG	1 cut(s)	489
BstV1I	GCAGC	2 cut(s)	86, 353
BstV2I	GAAGAC	2 cut(s)	77, 492
BsuRI	GGCC	1 cut(s)	598
BtsI	GCAGTG	1 cut(s)	405
BtsIMutI	CAGTG	1 cut(s)	405
Cfr13I	GGNCC	1 cut(s)	596
Csp6I	GTAC	2 cut(s)	170, 603
CviAII	CATG	2 cut(s)	393, 476
CviJI	RGCY	6 cut(s)	8, 22, 78, 109, 437, 598
CviKI_1	RGCY	6 cut(s)	8, 22, 78, 109, 437, 598
CviQI	GTAC	2 cut(s)	170, 603
DdeI	CTNAG	4 cut(s)	23, 89, 378, 606
DpnI	GATC	3 cut(s)	28, 391, 526
DpnII	GATC	3 cut(s)	26, 389, 524
Eco130I	CCWWGG	1 cut(s)	268
EcoRII	CCWGG	1 cut(s)	489
EcoT14I	CCWWGG	1 cut(s)	268
EcoT22I	ATGCAT	1 cut(s)	373
ErhI	CCWWGG	1 cut(s)	268
FaeI	CATG	2 cut(s)	396, 479
FaiI	YATR	3 cut(s)	369, 394, 477
FatI	CATG	2 cut(s)	392, 475
FauI	CCCGC	1 cut(s)	268
Fnu4HI	GCNGC	3 cut(s)	97, 100, 342
Fsp4HI	GCNGC	3 cut(s)	97, 100, 342
FspBI	CTAG	1 cut(s)	110
GluI	GCNGC	3 cut(s)	97, 100, 342
GsaI	CCCAGC	1 cut(s)	413
GsuI	CTGGAG	1 cut(s)	512
HaeIII	GGCC	1 cut(s)	598
Hin1II	CATG	2 cut(s)	396, 479
HincII	GTYRAC	1 cut(s)	232
HindII	GTYRAC	1 cut(s)	232
HinfI	GANTC	1 cut(s)	557
HpaI	GTTAAC	1 cut(s)	232
HphI	GGTGA	1 cut(s)	142
Hpy166II	GTNNAC	1 cut(s)	232
Hpy188I	TCNGA	1 cut(s)	358
Hpy188III	TCNNGA	1 cut(s)	190
Hpy8I	GTNNAC	1 cut(s)	232
Hpy99I	CGWCG	1 cut(s)	129
HpyAV	CCTTC	4 cut(s)	44, 68, 245, 571
HpyCH4III	ACNGT	1 cut(s)	322
HpyCH4IV	ACGT	2 cut(s)	204, 457
HpyCH4V	TGCA	5 cut(s)	132, 295, 371, 398, 553
HpyF10VI	GCNNNNNNNGC	1 cut(s)	281
HpyF3I	CTNAG	4 cut(s)	23, 89, 378, 606
HpySE526I	ACGT	2 cut(s)	204, 457
Hsp92II	CATG	2 cut(s)	396, 479
KspAI	GTTAAC	1 cut(s)	232
Kzo9I	GATC	3 cut(s)	26, 389, 524
LmnI	GCTCC	2 cut(s)	242, 272
Lsp1109I	GCAGC	2 cut(s)	86, 353
LweI	GCATC	1 cut(s)	119
MaeI	CTAG	1 cut(s)	110
MaeII	ACGT	2 cut(s)	204, 457
MaeIII	GTNAC	1 cut(s)	400
MalI	GATC	3 cut(s)	28, 391, 526
MbiI	CCGCTC	1 cut(s)	275
MboI	GATC	3 cut(s)	26, 389, 524
MboII	GAAGA	5 cut(s)	77, 178, 205, 497, 506
MfeI	CAATTG	1 cut(s)	30
MluCI	AATT	2 cut(s)	30, 498
MnlI	CCTC	1 cut(s)	49
Mph1103I	ATGCAT	1 cut(s)	373
MroXI	GAANNNNTTC	2 cut(s)	283, 352
MseI	TTAA	1 cut(s)	231
MspA1I	CMGCKG	1 cut(s)	99
MspR9I	CCNGG	1 cut(s)	491
MunI	CAATTG	1 cut(s)	30
MvaI	CCWGG	1 cut(s)	491
MwoI	GCNNNNNNNGC	1 cut(s)	281
NdeII	GATC	3 cut(s)	26, 389, 524
NlaIII	CATG	2 cut(s)	396, 479
NlaIV	GGNNCC	1 cut(s)	37
NmuCI	GTSAC	1 cut(s)	400
NsiI	ATGCAT	1 cut(s)	373
PdmI	GAANNNNTTC	2 cut(s)	283, 352
PfeI	GAWTC	1 cut(s)	557
PflMI	CCANNNNNTGG	1 cut(s)	481
PkrI	GCNGC	3 cut(s)	98, 101, 343
Psp6I	CCWGG	1 cut(s)	489
PspFI	CCCAGC	1 cut(s)	409
PspGI	CCWGG	1 cut(s)	489
PspN4I	GGNNCC	1 cut(s)	37
PspPI	GGNCC	1 cut(s)	596
RsaI	GTAC	2 cut(s)	171, 604
RsaNI	GTAC	2 cut(s)	170, 603
SaqAI	TTAA	1 cut(s)	231
SatI	GCNGC	3 cut(s)	97, 100, 342
Sau3AI	GATC	3 cut(s)	26, 389, 524
Sau96I	GGNCC	1 cut(s)	596
ScaI	AGTACT	1 cut(s)	604
ScrFI	CCNGG	1 cut(s)	491
SfaNI	GCATC	1 cut(s)	119
Sse9I	AATT	2 cut(s)	30, 498
SsiI	CCGC	2 cut(s)	97, 275
SspI	AATATT	1 cut(s)	570
SspMI	CTAG	1 cut(s)	110
StyD4I	CCNGG	1 cut(s)	489
StyI	CCWWGG	1 cut(s)	268
TaaI	ACNGT	1 cut(s)	322
TaiI	ACGT	2 cut(s)	207, 460
TasI	AATT	2 cut(s)	30, 498
TatI	WGTACW	1 cut(s)	602
TauI	GCSGC	1 cut(s)	99
TfiI	GAWTC	1 cut(s)	557
Tru1I	TTAA	1 cut(s)	231
Tru9I	TTAA	1 cut(s)	231
TscAI	CASTG	1 cut(s)	405
TseFI	GTSAC	1 cut(s)	400
TseI	GCWGC	2 cut(s)	99, 341
Tsp45I	GTSAC	1 cut(s)	400
TspDTI	ATGAA	3 cut(s)	17, 63, 87
TspRI	CASTG	1 cut(s)	405
Van91I	CCANNNNNTGG	1 cut(s)	481
XmnI	GAANNNNTTC	2 cut(s)	283, 352
XspI	CTAG	1 cut(s)	110
ZrmI	AGTACT	1 cut(s)	604
Zsp2I	ATGCAT	1 cut(s)	373

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.