MD02G1254900.v1.1
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
Physical Location & Seq
Reverse (-)
30648967 .. 30656678
7712 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1254900.v1.1.491

Sequence Viewer

Length: 4395 bp
ATGGCGTCGGAATTGGCCCGAGATCATGGATCAGCTGTGAGCAGCGGGAGGAGGAGCCATGGATCAGTGAGCAGGAGAAGTTGGGCGTCCACGAGTTTTCGCGAAGTGTGGAGCAATCAGGGGGATGTGTTCCACCGCAGCGGGAGAGCAGACCAGGAGGACGAGGAGGAGTTGAAATGGGCAGCGATAGAGAGGCTTCCAACAATTGATAGGTTAAGAAGAGGGATGCTTAAGCATGTGTTGGATAATGGAAATGTTGGTTATGAAGAGATCGACGTTACCAATCTCGGAAGGCTGGACAAGAAGAAAATCATGGAGAATATACTCAAGATTGCTGAACAGGATAATGAGAAGTTCCTTCAAAGGCTGAGAGATAGGACTAATAGGGTTGGGATTGAGATTCCGAAGGTTGAAGTTCGGTTCGAGCATTTATCAGTTGAAGGGGATGCATATGTTGGAACCAGAGCACTTCCTACTCTGCTGAATTCCTCCATGAATGCCATAGAGGGGATTCTTGGACTCATTAAGCTCTTCCCGTCAAAGAAAAGAGTAGTCAAGATACTTCGTGACGTGAGTGGAATAGTTAAGCCATCACGAATGACACTACTTCTGGGACCTCCAGGATCAGGGAAGACAACTTTCCTGCAGGCACTTGCTGGCAGGACGGATAAGGATCTAAGGGTATCCGGAAGGATCACTTACTGTGGTCATGAATTTTCAGAGTTTTTTCCTCAAAGAACATGCGCGTATATCAGCCAGCATAATCTGCACAATGGTGAGATGACAGTAAGAGAAACGTTGGATTTTTCAGGAAGATGCTTAGGGGTTGGAACCAGATACGAGCTACTGGCGGAATTGTCCAGACGAGAAAAAGAATCAGGAATTACACCTGATCCTGAGATTGATACGTTCATGAAAGCCACAGCTCTGGCAGGACAAGAAACCAGTTTATTTACGGACTATATTCTGAAGCTACTTGGATTAGATATTTGTGCTGATATTTTAGTGGGTGACGAGATGCGAAGGGGCATATCTGGTGGACAGAAGAAGCGTCTTACTACAGGAGAAATGTTGGTTGGACCAGCAAAAGTTTTTTTCATGGATGAAATATCAACTGGTTTAGACAGTTCGACAACATTCGAAATTGTCCAGTTTATGAGGCAGATGGTTCATACAATGGATATCACCATGACAATCTCTCTTCTGCAACCTGCACCTGAAACCTTTGACCTTTTTGACGACATTATCTTACTTTCAGATGGTCGGATTGTTTACCAAGGTCCACGAGAGAATGCACTCGAATTTTTTGAGAGTGTAGGTTTCAAGTGTCCGGAAAGGAAAGGAGTGGCAGACTTCCTGCAGGAGGTTATTTCCGGAAAGGACCAAGAACAATACTGGTTTAGGCAGAATGAAAATTACCGATATATTAGCGCATCGGAATTTTCAGATTATTTTAGAAGTTACCAAATTGGTCAAAATCTGTCTGAAGAACTCCGGATTCCTTATGATAGATCTAAAACTCATGCAGCTGCATTAGTGAAAAAAAAGTACGGAATCTCAAACTGGGAACTCTTCAACGCGTGCTTTGCAAGAGAGTGGCTCCTGATGAAGCGGAACTCTGCTCTATACATATTCAAGACTAGTCAGCTCACAATCATGTCAATAATTGCCATGACAATTTTTTTGAGAACAGAAATGAAGCACGGTCGATTACAGGATGGGGGGAAGTTTTATGGTGCACTATTTTTCAGTCTCATAAATGTAATGTTCAACGGGATGACAGAGCTAGCAATGACTATATTCAGGCTTCCTGTATTTTTTAAACAGAGAGATGCATTGTTACACCCGGCATGGGCTTTTAGCTTACCAATTTGGGTCCTCAGGATCCCCGTATCACTGATTGAATCAGGATTATGGATCATTCTTACATATTACACCATCGGTTTTGCTCCTGCAGCTAGTAGGTTTTTCCGCCAACTATTGGCATTATTCAGCGTGCATCAGATGGCCCTATCACTCTTCCGCTTCATTGCAGCTCTTGGCAGAACACAAATTGTTGCAAGCACACTTGGCACCTTCACACTGCTATTGGTTTTTGTCCTCGGCGGATTCATTGTTGCCAAAGATGACATCGAACCATGGATGATATGGGGCTACTATATTTCTCCTATGATGTATGGGCAAAATGCCATAGCCATCAATGAATTTCTTGACGAAAGATGGAGTGCACCGAATATTGACCCGCGAATCCCAGAACCAACAGTTGGAAAGGCTCTCCTAAAGGCCAGAGGCATGTTTACAGAAGAGTACTGGTACTGGATATGCATAGGAGCACTCCTCGGGTTTTCCCTACTTTTCAACATCTTGTTTATTGCAGCACTGACTTTTCTGAACCCTTTCGGAGATTCTAAATCTATTATTTTGGAGGACGATGACAAGCAGGGAAGTAAAAAGCAGCCAATCTTGGATACAATGGGATCCACAGAATTGAGTTCAGCATTTACTACCCCAATGCTTAAAGGTATTGATATGGAAGTGATGAAATCTACAAAGCGAGGAATGGTGCTGAAGTTTCAGCCTTTGTCACTTGCATTTGATCATGTGAACTACTATGTCGATATGCCTGCTGAAATGAAACGCCAAGGAATTGAAGAGGATCGCCTCCAATTGTTGCGAGATGTTAGTGGTGCTTTTAGGCCTGGTGTTCTAACAGCATTGGTTGGCGTCAGCGGTGCAGGAAAGACTACCTTGATGGATGTGCTAGCAGGAAGGAAAACTGGTGGTTATATTGAAGGAAGTATCAGCATTTCCGGTTACCCAAAGAACCAAGAAACCTTTGCTCGAGTTAGCGGTTATTGTGAACAAAATGATATCCACTCTCCAAATGTAACTGTTTATGAATCTCTCGTTTACTCTGCTTGGTTGCGTCTTGCAAAGGAAATTACGAAGGAAACACGACAGATGTTTGTGGAGGAAGTCATGGATTTGGTTGAGCTAAAACCTCTGAGGAATTCCTTAGTAGGCCTTCCTGGAATAGATGGTCTGTCAACAGAACAGAGAAAGAGATTAACCGTAGCTGTAGAGTTGGTGGCGAATCCCTCCATAATCTTCATGGATGAGCCGACATCAGGTCTTGATGCAAGAGCTGCTGCAATTGTAATGCGTACAGTGAGAAACACTGTGGATACAGGTCGGACGCTTGTCTGCACTATTCATCAGCCAAGCATAGACATTTTTGAAGCCTTTGATGAGCTTCTGTTGATGAAGAGAGGTGGACAAGTGATTTATGCCGGACCCCTTGGCCGCTGTTCTCAAAAGCTCATAGAATATTTTGAAGCTATTCCCGGAATTACAAAGATCAGAGATGGCTACAATCCTGCAACATGGATGCTGGAAATCACTTCTCCTGCAGTTGAGTCCCGACTCAATGTGGATTTTGGGGATATATACGCGAACTCTGAACTTTATAGGAAGAATCAAGAACTTATAACAGAGCTAAGCACTCCAGTCCCGGGATCCAAAGACCTTTATTTCCCAACCAAATACTCTCAGTCTTTTCTTACTCAATGCAAAGCTTGCTTCTGGAAACAACATTGGTCATACTGGAGGAACCCGCCATACAACGCCATCCGGCTCTTTCTGACTATAATTGTTGGTATTATTTTTGGACTAATTTTCTGGAACAAAGGAGATCAAACACATAAGGAACAAGACCTACTAAATCTAGTGGGAGCCATGTATTCTGCCGTTCTCTTCCTTGGAGCAACCAACACCGCCTCAGTGCAGCCTATTGTGGCAGTTGAAAGAACAGTATTTTACCGCGAAAGAGCAGCAGGGATGTACTCTGCGCTGCCTTATGCTTTTGCTCAGGTGGCGATTGAAACAATTTACGTTGCAATCCAAACTCTGGCGTATAGTCTCATCCTCTTTTCAATGATGGGGTTCACTTGGCACGTTGACAAGTTCTTCTTGTTCTACTACTTTATATTGATGTGCTTTATCTACTTCACATTGTACGGCATGATGCTTGTAGCTCTCACGCCAGGCCACCAAATTGCGGCCATTGTGATGTCCTTTTTCCTGAGCTTCTGGAACCTCTTCTCTGGTTTCCTCCTCCCTAGGATGCAAATCCCGATATGGTGGCGATGGTACTACTGGGGTTCACCGGTGGCTTGGACAATCTACGGACTAGTGACATCCCAAGTGGGAGACAGAACTTCATTAGTTGAAGTTCCAGGAGAAGCTCATATGTCAGTGCAGATGTACCTCAAGACAAGATTAGGGTTTGAATATGACTTCCTCGGAGCCGTCGTCGTGGCTCATATTGGTTTCGTGCTCCTGTTCTTGTTCGTCTTTGCCTACGGTATCAAGTGTCTCAACTTCCAAACGAGATGA

Protein Analysis

1465

Amino Acids

166.07

Weight (kDa)

7.3

Isoelectric Point (pI)

37.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_trans_N PF14510 113 - 162 7.4e-10 ABC-transporter N-terminal
ABC_tran PF00005 188 - 369 5.9e-16 ABC transporter
ABC2_membrane_7 PF19055 403 - 461 2.5e-06 ABC-2 type transporter
ABC2_membrane PF01061 524 - 736 8.7e-47 ABC-2 type transporter
PDR_assoc PF08370 749 - 807 2.6e-27 Plant PDR ABC transporter associated
ABC_tran PF00005 891 - 1043 2.5e-20 ABC transporter
ABC2_membrane PF01061 1188 - 1401 3.8e-57 ABC-2 type transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000245)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66950 AT2G36380
fragaria_vesca FvH4_3g29700 FvH4_3g29700 FvH4_3g29700 FvH4_3g29700 FvH4_3g29710 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29760 FvH4_3g29781 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150
malus_domestica MD02G1254900.v1.1 MD03G1119400.v1.1 MD03G1136800.v1.1 MD03G1137000.v1.1 MD04G1187500.v1.1 MD08G1208900.v1.1 MD08G1209000.v1.1 MD11G1159000.v1.1 MD11G1159100.v1.1 MD11G1159200.v1.1 MD12G1020800.v1.1 MD12G1021000.v1.1 MD14G1017900.v1.1 MD14G1018100.v1.1
prunus_persica Prupe.2G084300_v2.0.a1 Prupe.2G084300_v2.0.a1 Prupe.6G121200_v2.0.a1 Prupe.6G121200_v2.0.a1 Prupe.6G121500_v2.0.a1 Prupe.6G121800_v2.0.a1 Prupe.6G121900_v2.0.a1 Prupe.6G122100_v2.0.a1 Prupe.7G115200_v2.0.a1 Prupe.7G115200_v2.0.a1
pyrus_communis pycom02g21460 pycom03g09270 pycom03g09290 pycom07g05130 pycom08g18050 pycom11g12950 pycom11g12960 pycom11g12970 pycom12g01950 pycom12g01980 pycom14g01620 pycom14g01710 pycom14g01720 pycom16g12190
rosa_chinensis RchiOBHm_Chr1g0340571 RchiOBHm_Chr2g0107751 RchiOBHm_Chr3g0472451 RchiOBHm_Chr5g0055051 RchiOBHm_Chr5g0055091 RchiOBHm_Chr5g0055111 RchiOBHm_Chr5g0055121 RchiOBHm_Chr5g0055131 RchiOBHm_Chr5g0062371 RchiOBHm_Chr6g0265121 RchiOBHm_Chr6g0275771 RchiOBHm_Chr7g0187231
rosa_laevigata RLG00000006319 RLG00000013820 RLG00000024078 RLG00000034960 RLG00000034963 RLG00000034965 RLG00000034966 RLG00000034968 RLG00000034970
rosa_multiflora Rmu_co8358859.1_g000001 Rmu_co8422375.1_g000001 Rmu_co8427767.1_g000001 Rmu_co8474941.1_g000001 Rmu_sc0000925.1_g000009 Rmu_sc0001694.1_g000015 Rmu_sc0001694.1_g000022 Rmu_sc0001694.1_g000024 Rmu_sc0001694.1_g000030 Rmu_sc0003993.1_g000001 Rmu_sc0010632.1_g000001 Rmu_sc0035175.1_g000001
rosa_roxburghii Rroxscaffold_1G00025230 Rroxscaffold_1G00025240 Rroxscaffold_1G00025300 Rroxscaffold_1G00025320 Rroxscaffold_1G00025330 Rroxscaffold_1G00025360 Rroxscaffold_1G00025440 Rroxscaffold_1G00033590 Rroxscaffold_6G00408900
rosa_rugosa Rorug03G0125500.1 Rorug03G0125600.1 Rorug05G0290600 Rorug05G0291100 Rorug05G0291200 Rorug05G0291300
rosa_samantha Rh1CG035400 Rh1CG243200 Rh2DG410600 Rh3AG177500 Rh3CG193800 Rh3CG200900 Rh3DG171700 Rh5AG043000 Rh5AG360500 Rh5AG360900 Rh5AG361000 Rh5AG361300 Rh5AG441100 Rh5CG393700 Rh5CG393900 Rh5CG394200 Rh5DG247300 Rh5DG385200 Rh5DG385500 Rh5DG385800 Rh6BG272200 Rh6DG204000 Rh7AG084700 Rh7AG178300
rosa_wichuraiana Rw0G022120 Rw3G016410 Rw5G033910 Rw5G033920 Rw5G033940 Rw5G033960 Rw5G033970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 3488
Acc36I ACCTGC 1 cut(s) 1219
AccB1I GGYRCC 1 cut(s) 2072
AccB7I CCANNNNNTGG 3 cut(s) 1981, 2264, 3907
AccII CGCG 6 cut(s) 102, 746, 1580, 2245, 3452, 3822
AccIII TCCGGA 4 cut(s) 686, 1330, 1373, 1494
AclI AACGTT 1 cut(s) 797
AcoI YGGCCR 2 cut(s) 3301, 4059
AcsI RAATTY 6 cut(s) 484, 713, 1301, 1439, 2204, 3010
AcuI CTGAAG 3 cut(s) 989, 1506, 2588
AcyI GRCGYC 3 cut(s) 5, 86, 2724
AfaI GTAC 8 cut(s) 1550, 2309, 2315, 3166, 3842, 4016, 4151, 4265
AflII CTTAAG 1 cut(s) 230
AflIII ACRYGT 1 cut(s) 1578
AgeI ACCGGT 1 cut(s) 4165
AhdI GACNNNNNGTC 1 cut(s) 3129
AhlI ACTAGT 2 cut(s) 1640, 4189
AjiI CACGTC 1 cut(s) 571
AjnI CCWGG 6 cut(s) 153, 619, 2698, 3028, 4042, 4234
AjuI GAANNNNNNNTTGG 4 cut(s) 1059, 1091, 2247, 2279
AleI CACNNNNGTG 1 cut(s) 774
Alw21I GWGCWC 5 cut(s) 469, 1741, 2230, 2335, 4338
Alw26I GTCTC 4 cut(s) 1757, 3923, 4203, 4379
Alw44I GTGCAC 2 cut(s) 1737, 2226
Ama87I CYCGRG 4 cut(s) 18, 2339, 2841, 3511
Aor13HI TCCGGA 4 cut(s) 686, 1330, 1373, 1494
AoxI GGCC 8 cut(s) 15, 2007, 2283, 2696, 3022, 3301, 4045, 4059
ApaLI GTGCAC 2 cut(s) 1737, 2226
ApoI RAATTY 6 cut(s) 484, 713, 1301, 1439, 2204, 3010
ArsI GACNNNNNNTTYG 2 cut(s) 1666, 1698
AsiGI ACCGGT 1 cut(s) 4165
Asp700I GAANNNNTTC 3 cut(s) 2396, 3339, 4097
AspA2I CCTAGG 1 cut(s) 4118
AspLEI GCGC 3 cut(s) 746, 1433, 3850
AspS9I GGNCC 8 cut(s) 16, 614, 1079, 1280, 1381, 1876, 2008, 3293
AsuC2I CCSGG 4 cut(s) 1847, 3345, 3512, 3513
AsuHPI GGTGA 4 cut(s) 788, 1022, 1177, 4155
AsuII TTCGAA 1 cut(s) 1140
AsuNHI GCTAGC 2 cut(s) 1786, 2761
AvaI CYCGRG 4 cut(s) 18, 2339, 2841, 3511
AvaII GGWCC 6 cut(s) 614, 1079, 1280, 1381, 1876, 3293
AvrII CCTAGG 1 cut(s) 4118
AxyI CCTNAGG 1 cut(s) 1880
BaeGI GKGCMC 2 cut(s) 1741, 2230
BamHI GGATCC 3 cut(s) 1884, 2477, 3515
BanI GGYRCC 1 cut(s) 2072
BauI CACGAG 2 cut(s) 91, 1284
BbsI GAAGAC 1 cut(s) 638
Bbv12I GWGCWC 5 cut(s) 469, 1741, 2230, 2335, 4338
BceAI ACGGC 3 cut(s) 3731, 4033, 4292
BcgI CGANNNNNNTGC 2 cut(s) 2606, 2640
BciT130I CCWGG 6 cut(s) 155, 621, 2700, 3030, 4044, 4236
BciVI GTATCC 3 cut(s) 694, 2461, 3178
BclI TGATCA 1 cut(s) 2596
BcnI CCSGG 4 cut(s) 1847, 3345, 3512, 3513
BcoDI GTCTC 4 cut(s) 1757, 3923, 4203, 4379
BcuI ACTAGT 2 cut(s) 1640, 4189
BfaI CTAG 7 cut(s) 1641, 1787, 1959, 2762, 3725, 4119, 4190
BfmI CTRYAG 6 cut(s) 644, 1059, 1358, 1953, 3078, 3408
BfrI CTTAAG 1 cut(s) 230
BfuAI ACCTGC 1 cut(s) 1219
BfuI GTATCC 3 cut(s) 694, 2461, 3178
BglII AGATCT 1 cut(s) 1511
BlnI CCTAGG 1 cut(s) 4118
BlpI GCTNAGC 1 cut(s) 3497
BmcAI AGTACT 1 cut(s) 2309
Bme18I GGWCC 6 cut(s) 614, 1079, 1280, 1381, 1876, 3293
BmeRI GACNNNNNGTC 1 cut(s) 3129
BmeT110I CYCGRG 4 cut(s) 18, 2339, 2841, 3511
BmgBI CACGTC 1 cut(s) 571
BmgT120I GGNCC 8 cut(s) 16, 614, 1079, 1280, 1381, 1876, 2008, 3293
BmrI ACTGGG 2 cut(s) 1573, 4165
BmtI GCTAGC 2 cut(s) 1790, 2765
BmuI ACTGGG 2 cut(s) 1573, 4165
BoxI GACNNNNGTC 1 cut(s) 3200
BpiI GAAGAC 1 cut(s) 638
BplI GAGNNNNNCTC 4 cut(s) 1584, 1616, 2322, 2354
BpmI CTGGAG 3 cut(s) 603, 3489, 3625
Bpu10I CCTNAGC 3 cut(s) 820, 3867, 4082
Bpu1102I GCTNAGC 1 cut(s) 3497
Bpu14I TTCGAA 1 cut(s) 1140
BpuEI CTTGAG 2 cut(s) 311, 4253
BpuMI CCSGG 4 cut(s) 1847, 3345, 3512, 3513
BsaBI GATNNNNATC 2 cut(s) 672, 4127
BsaHI GRCGYC 3 cut(s) 5, 86, 2724
BsaWI WCCGGW 6 cut(s) 686, 1330, 1373, 1494, 2810, 4165
BsaXI ACNNNNNCTCC 2 cut(s) 4296, 4326
Bse118I RCCGGY 1 cut(s) 4165
Bse21I CCTNAGG 1 cut(s) 1880
Bse3DI GCAATG 2 cut(s) 1797, 2028
Bse8I GATNNNNATC 2 cut(s) 672, 4127
BseAI TCCGGA 4 cut(s) 686, 1330, 1373, 1494
BseBI CCWGG 6 cut(s) 155, 621, 2700, 3030, 4044, 4236
BseJI GATNNNNATC 2 cut(s) 672, 4127
BseMI GCAATG 2 cut(s) 1797, 2028
BseMII CTCAG 8 cut(s) 359, 888, 1894, 2996, 3563, 3792, 3881, 4073
BseRI GAGGAG 6 cut(s) 64, 67, 179, 182, 2327, 4103
BseSI GKGCMC 2 cut(s) 1741, 2230
BsgI GTGCAG 6 cut(s) 752, 1197, 2754, 3190, 3803, 4277
Bsh1236I CGCG 6 cut(s) 102, 746, 1580, 2245, 3452, 3822
Bsh1285I CGRYCG 1 cut(s) 1708
BshFI GGCC 8 cut(s) 17, 2009, 2285, 2698, 3024, 3303, 4047, 4061
BshNI GGYRCC 1 cut(s) 2072
BshTI ACCGGT 1 cut(s) 4165
BsiEI CGRYCG 1 cut(s) 1708
BsiHKAI GWGCWC 5 cut(s) 469, 1741, 2230, 2335, 4338
BsiHKCI CYCGRG 4 cut(s) 18, 2339, 2841, 3511
BslFI GGGAC 3 cut(s) 627, 3403, 3494
BsmAI GTCTC 4 cut(s) 1757, 3923, 4203, 4379
BsmFI GGGAC 3 cut(s) 627, 3403, 3494
BsmI GAATGC 2 cut(s) 502, 1297
BsnI GGCC 8 cut(s) 17, 2009, 2285, 2698, 3024, 3303, 4047, 4061
BsoBI CYCGRG 4 cut(s) 18, 2339, 2841, 3511
Bsp119I TTCGAA 1 cut(s) 1140
Bsp1286I GDGCHC 5 cut(s) 469, 1741, 2230, 2335, 4338
Bsp13I TCCGGA 4 cut(s) 686, 1330, 1373, 1494
Bsp1720I GCTNAGC 1 cut(s) 3497
Bsp19I CCATGG 2 cut(s) 58, 2138
Bsp68I TCGCGA 1 cut(s) 102
BspANI GGCC 8 cut(s) 17, 2009, 2285, 2698, 3024, 3303, 4047, 4061
BspCNI CTCAG 8 cut(s) 360, 889, 1893, 2997, 3562, 3791, 3880, 4074
BspEI TCCGGA 4 cut(s) 686, 1330, 1373, 1494
BspFNI CGCG 6 cut(s) 102, 746, 1580, 2245, 3452, 3822
BspHI TCATGA 2 cut(s) 709, 912
BspMAI CTGCAG 4 cut(s) 648, 1362, 1957, 3412
BspMI ACCTGC 1 cut(s) 1219
BspOI GCTAGC 2 cut(s) 1790, 2765
BspQI GCTCTTC 1 cut(s) 536
BspT104I TTCGAA 1 cut(s) 1140
BspT107I GGYRCC 1 cut(s) 2072
BspTI CTTAAG 1 cut(s) 230
BsrDI GCAATG 2 cut(s) 1797, 2028
BsrFI RCCGGY 1 cut(s) 4165
BssAI RCCGGY 1 cut(s) 4165
BssNI GRCGYC 3 cut(s) 5, 86, 2724
BssSI CACGAG 2 cut(s) 91, 1284
BssT1I CCWWGG 7 cut(s) 58, 1276, 2138, 2641, 3298, 3757, 4118
Bst2BI CACGAG 2 cut(s) 91, 1284
Bst2UI CCWGG 6 cut(s) 155, 621, 2700, 3030, 4044, 4236
BstACI GRCGYC 3 cut(s) 5, 86, 2724
BstAFI CTTAAG 1 cut(s) 230
BstAPI GCANNNNNTGC 3 cut(s) 766, 3146, 3576
BstBI TTCGAA 1 cut(s) 1140
BstDSI CCRYGG 2 cut(s) 58, 2138
BstEII GGTNACC 1 cut(s) 2813
BstENI CCTNNNNNAGG 1 cut(s) 1361
BstFNI CGCG 6 cut(s) 102, 746, 1580, 2245, 3452, 3822
BstHHI GCGC 3 cut(s) 746, 1433, 3850
BstMAI GTCTC 4 cut(s) 1757, 3923, 4203, 4379
BstMCI CGRYCG 1 cut(s) 1708
BstMWI GCNNNNNNNGC 7 cut(s) 766, 1586, 1955, 2070, 3146, 3576, 3872
BstNI CCWGG 6 cut(s) 155, 621, 2700, 3030, 4044, 4236
BstNSI RCATGY 3 cut(s) 239, 744, 2296
BstPAI GACNNNNGTC 1 cut(s) 3200
BstPI GGTNACC 1 cut(s) 2813
BstSFI CTRYAG 6 cut(s) 644, 1059, 1358, 1953, 3078, 3408
BstSLI GKGCMC 2 cut(s) 1741, 2230
BstUI CGCG 6 cut(s) 102, 746, 1580, 2245, 3452, 3822
BstV2I GAAGAC 1 cut(s) 638
BstX2I RGATCY 5 cut(s) 673, 1511, 1884, 2477, 3515
BstXI CCANNNNNNTGG 1 cut(s) 928
BstYI RGATCY 5 cut(s) 673, 1511, 1884, 2477, 3515
Bsu36I CCTNAGG 1 cut(s) 1880
BsuI GTATCC 3 cut(s) 694, 2461, 3178
BsuRI GGCC 8 cut(s) 17, 2009, 2285, 2698, 3024, 3303, 4047, 4061
BtgI CCRYGG 2 cut(s) 58, 2138
BtgZI GCGATG 1 cut(s) 4159
BtrI CACGTC 1 cut(s) 571
BtsI GCAGTG 1 cut(s) 2081
BtsIMutI CAGTG 8 cut(s) 72, 1895, 2081, 2378, 3174, 3177, 3786, 4260
BtuMI TCGCGA 1 cut(s) 102
BveI ACCTGC 1 cut(s) 1219
CciI TCATGA 2 cut(s) 709, 912
CfoI GCGC 3 cut(s) 746, 1433, 3850
Cfr10I RCCGGY 1 cut(s) 4165
Cfr13I GGNCC 8 cut(s) 16, 614, 1079, 1280, 1381, 1876, 2008, 3293
Cfr9I CCCGGG 1 cut(s) 3511
CseI GACGC 5 cut(s) 75, 1040, 2713, 2915, 3205
Csp6I GTAC 8 cut(s) 1549, 2308, 2314, 3165, 3841, 4015, 4150, 4264
CspAI ACCGGT 1 cut(s) 4165
CviQI GTAC 8 cut(s) 1549, 2308, 2314, 3165, 3841, 4015, 4150, 4264
DraI TTTAAA 1 cut(s) 1822
DriI GACNNNNNGTC 1 cut(s) 3129
EaeI YGGCCR 2 cut(s) 3301, 4059
Eam1105I GACNNNNNGTC 1 cut(s) 3129
EciI GGCGGA 3 cut(s) 866, 1961, 2121
Eco130I CCWWGG 7 cut(s) 58, 1276, 2138, 2641, 3298, 3757, 4118
Eco147I AGGCCT 2 cut(s) 2698, 3024
Eco32I GATATC 2 cut(s) 1183, 2872
Eco47I GGWCC 6 cut(s) 614, 1079, 1280, 1381, 1876, 3293
Eco57I CTGAAG 3 cut(s) 989, 1506, 2588
Eco81I CCTNAGG 1 cut(s) 1880
Eco88I CYCGRG 4 cut(s) 18, 2339, 2841, 3511
Eco91I GGTNACC 1 cut(s) 2813
EcoNI CCTNNNNNAGG 1 cut(s) 1361
EcoO109I RGGNCCY 2 cut(s) 614, 1876
EcoO65I GGTNACC 1 cut(s) 2813
EcoRI GAATTC 2 cut(s) 484, 3010
EcoRII CCWGG 6 cut(s) 153, 619, 2698, 3028, 4042, 4234
EcoRV GATATC 2 cut(s) 1183, 2872
EcoT14I CCWWGG 7 cut(s) 58, 1276, 2138, 2641, 3298, 3757, 4118
EcoT22I ATGCAT 3 cut(s) 451, 1837, 2327
ErhI CCWWGG 7 cut(s) 58, 1276, 2138, 2641, 3298, 3757, 4118
FalI AAGNNNNNCTT 6 cut(s) 682, 714, 2732, 2764, 3953, 3985
FaqI GGGAC 3 cut(s) 627, 3403, 3494
FauI CCCGC 4 cut(s) 38, 134, 2250, 3621
FauNDI CATATG 2 cut(s) 451, 4248
FbaI TGATCA 1 cut(s) 2596
FspBI CTAG 7 cut(s) 1641, 1787, 1959, 2762, 3725, 4119, 4190
GlaI GCGC 3 cut(s) 745, 1432, 3849
GsuI CTGGAG 3 cut(s) 603, 3489, 3625
HaeIII GGCC 8 cut(s) 17, 2009, 2285, 2698, 3024, 3303, 4047, 4061
HgaI GACGC 5 cut(s) 75, 1040, 2713, 2915, 3205
HhaI GCGC 3 cut(s) 746, 1433, 3850
Hin1I GRCGYC 3 cut(s) 5, 86, 2724
Hin6I GCGC 3 cut(s) 744, 1431, 3848
HinP1I GCGC 3 cut(s) 744, 1431, 3848
HincII GTYRAC 2 cut(s) 3048, 3958
HindII GTYRAC 2 cut(s) 3048, 3958
HindIII AAGCTT 1 cut(s) 3573
HphI GGTGA 4 cut(s) 788, 1022, 1177, 4155
Hpy99I CGWCG 4 cut(s) 10, 278, 4313, 4316
HpyCH4IV ACGT 6 cut(s) 276, 570, 797, 908, 3891, 3954
HpyF10VI GCNNNNNNNGC 7 cut(s) 766, 1586, 1955, 2070, 3146, 3576, 3872
HpySE526I ACGT 6 cut(s) 276, 570, 797, 908, 3891, 3954
Hsp92I GRCGYC 3 cut(s) 5, 86, 2724
HspAI GCGC 3 cut(s) 744, 1431, 3848
Kpn2I TCCGGA 4 cut(s) 686, 1330, 1373, 1494
Ksp22I TGATCA 1 cut(s) 2596
LguI GCTCTTC 1 cut(s) 536
LmnI GCTCC 9 cut(s) 54, 111, 1605, 1954, 2330, 3731, 3761, 4304, 4341
MaeI CTAG 7 cut(s) 1641, 1787, 1959, 2762, 3725, 4119, 4190
MaeII ACGT 6 cut(s) 276, 570, 797, 908, 3891, 3954
MaeIII GTNAC 9 cut(s) 277, 566, 1010, 1460, 1839, 2583, 2813, 2887, 4192
MfeI CAATTG 3 cut(s) 204, 2666, 3153
MflI RGATCY 5 cut(s) 673, 1511, 1884, 2477, 3515
MhlI GDGCHC 5 cut(s) 469, 1741, 2230, 2335, 4338
MluI ACGCGT 1 cut(s) 1578
MlyI GAGTC 3 cut(s) 513, 3417, 3425
MmeI TCCRAC 9 cut(s) 222, 224, 436, 780, 808, 1057, 1244, 2245, 3173
Mph1103I ATGCAT 3 cut(s) 451, 1837, 2327
MroI TCCGGA 4 cut(s) 686, 1330, 1373, 1494
MroXI GAANNNNTTC 3 cut(s) 2396, 3339, 4097
MseI TTAA 7 cut(s) 215, 231, 525, 585, 1821, 2517, 3068
MslI CAYNNNNRTG 3 cut(s) 774, 1655, 4067
MspA1I CMGCKG 6 cut(s) 35, 45, 141, 1529, 2730, 3306
MspCI CTTAAG 1 cut(s) 230
MunI CAATTG 3 cut(s) 204, 2666, 3153
Mva1269I GAATGC 2 cut(s) 502, 1297
MvaI CCWGG 6 cut(s) 155, 621, 2700, 3030, 4044, 4236
MvnI CGCG 6 cut(s) 102, 746, 1580, 2245, 3452, 3822
MwoI GCNNNNNNNGC 7 cut(s) 766, 1586, 1955, 2070, 3146, 3576, 3872
NciI CCSGG 4 cut(s) 1847, 3345, 3512, 3513
NcoI CCATGG 2 cut(s) 58, 2138
NdeI CATATG 2 cut(s) 451, 4248
NheI GCTAGC 2 cut(s) 1786, 2761
NmeAIII GCCGAG 1 cut(s) 2082
NmuCI GTSAC 4 cut(s) 566, 1010, 2583, 4192
NruI TCGCGA 1 cut(s) 102
NsiI ATGCAT 3 cut(s) 451, 1837, 2327
NspI RCATGY 3 cut(s) 239, 744, 2296
NspV TTCGAA 1 cut(s) 1140
OliI CACNNNNGTG 1 cut(s) 774
PaeR7I CTCGAG 1 cut(s) 2841
PagI TCATGA 2 cut(s) 709, 912
PceI AGGCCT 2 cut(s) 2698, 3024
PciSI GCTCTTC 1 cut(s) 536
PcsI WCGNNNNNNNCGW 1 cut(s) 4308
PctI GAATGC 2 cut(s) 502, 1297
PdmI GAANNNNTTC 3 cut(s) 2396, 3339, 4097
PflMI CCANNNNNTGG 3 cut(s) 1981, 2264, 3907
PfoI TCCNGGA 4 cut(s) 619, 3028, 3343, 4234
PinAI ACCGGT 1 cut(s) 4165
PleI GAGTC 3 cut(s) 513, 3417, 3424
PpsI GAGTC 3 cut(s) 513, 3417, 3424
PpuMI RGGWCCY 2 cut(s) 614, 1876
PshAI GACNNNNGTC 1 cut(s) 3200
PsiI TTATAA 1 cut(s) 3488
Psp1406I AACGTT 1 cut(s) 797
Psp5II RGGWCCY 2 cut(s) 614, 1876
Psp6I CCWGG 6 cut(s) 153, 619, 2698, 3028, 4042, 4234
PspEI GGTNACC 1 cut(s) 2813
PspGI CCWGG 6 cut(s) 153, 619, 2698, 3028, 4042, 4234
PspPI GGNCC 8 cut(s) 16, 614, 1079, 1280, 1381, 1876, 2008, 3293
PspPPI RGGWCCY 2 cut(s) 614, 1876
PspXI VCTCGAGB 1 cut(s) 2841
PsrI GAACNNNNNNTAC 4 cut(s) 3602, 3634, 3699, 3731
PstI CTGCAG 4 cut(s) 648, 1362, 1957, 3412
PsuI RGATCY 5 cut(s) 673, 1511, 1884, 2477, 3515
PvuII CAGCTG 2 cut(s) 35, 1529
RruI TCGCGA 1 cut(s) 102
RsaI GTAC 8 cut(s) 1550, 2309, 2315, 3166, 3842, 4016, 4151, 4265
RsaNI GTAC 8 cut(s) 1549, 2308, 2314, 3165, 3841, 4015, 4150, 4264
RseI CAYNNNNRTG 3 cut(s) 774, 1655, 4067
SapI GCTCTTC 1 cut(s) 536
SaqAI TTAA 7 cut(s) 215, 231, 525, 585, 1821, 2517, 3068
Sau96I GGNCC 8 cut(s) 16, 614, 1079, 1280, 1381, 1876, 2008, 3293
SbfI CCTGCAGG 2 cut(s) 648, 1362
ScaI AGTACT 1 cut(s) 2309
SchI GAGTC 3 cut(s) 513, 3417, 3425
SdaI CCTGCAGG 2 cut(s) 648, 1362
SduI GDGCHC 5 cut(s) 469, 1741, 2230, 2335, 4338
SfcI CTRYAG 6 cut(s) 644, 1059, 1358, 1953, 3078, 3408
Sfr274I CTCGAG 1 cut(s) 2841
SfuI TTCGAA 1 cut(s) 1140
SgrAI CRCCGGYG 1 cut(s) 4165
SinI GGWCC 6 cut(s) 614, 1079, 1280, 1381, 1876, 3293
SlaI CTCGAG 1 cut(s) 2841
SmaI CCCGGG 1 cut(s) 3513
SmiMI CAYNNNNRTG 3 cut(s) 774, 1655, 4067
SmlI CTYRAG 4 cut(s) 230, 326, 2841, 4268
SmoI CTYRAG 4 cut(s) 230, 326, 2841, 4268
SpeI ACTAGT 2 cut(s) 1640, 4189
Sse8387I CCTGCAGG 2 cut(s) 648, 1362
SseBI AGGCCT 2 cut(s) 2698, 3024
SspI AATATT 2 cut(s) 2236, 3329
SspMI CTAG 7 cut(s) 1641, 1787, 1959, 2762, 3725, 4119, 4190
StuI AGGCCT 2 cut(s) 2698, 3024
StyI CCWWGG 7 cut(s) 58, 1276, 2138, 2641, 3298, 3757, 4118
TaiI ACGT 6 cut(s) 279, 573, 800, 911, 3894, 3957
TaqI TCGA 9 cut(s) 273, 423, 1130, 1140, 1299, 1708, 2133, 2616, 2842
TatI WGTACW 2 cut(s) 2307, 3840
TauI GCSGC 2 cut(s) 3306, 4061
Tru1I TTAA 7 cut(s) 215, 231, 525, 585, 1821, 2517, 3068
Tru9I TTAA 7 cut(s) 215, 231, 525, 585, 1821, 2517, 3068
TscAI CASTG 8 cut(s) 72, 1902, 2088, 2385, 3174, 3184, 3786, 4260
TseFI GTSAC 4 cut(s) 566, 1010, 2583, 4192
Tsp45I GTSAC 4 cut(s) 566, 1010, 2583, 4192
TspGWI ACGGA 4 cut(s) 680, 971, 1566, 4200
TspMI CCCGGG 1 cut(s) 3511
TspRI CASTG 8 cut(s) 72, 1902, 2088, 2385, 3174, 3184, 3786, 4260
Van91I CCANNNNNTGG 3 cut(s) 1981, 2264, 3907
Vha464I CTTAAG 1 cut(s) 230
VneI GTGCAC 2 cut(s) 1737, 2226
VpaK11BI GGWCC 6 cut(s) 614, 1079, 1280, 1381, 1876, 3293
XagI CCTNNNNNAGG 1 cut(s) 1361
XapI RAATTY 6 cut(s) 484, 713, 1301, 1439, 2204, 3010
XceI RCATGY 3 cut(s) 239, 744, 2296
XcmI CCANNNNNNNNNTGG 2 cut(s) 2145, 3109
XhoI CTCGAG 1 cut(s) 2841
XmaI CCCGGG 1 cut(s) 3511
XmaJI CCTAGG 1 cut(s) 4118
XmnI GAANNNNTTC 3 cut(s) 2396, 3339, 4097
XspI CTAG 7 cut(s) 1641, 1787, 1959, 2762, 3725, 4119, 4190
ZrmI AGTACT 1 cut(s) 2309
Zsp2I ATGCAT 3 cut(s) 451, 1837, 2327
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.