MD08G1208900.v1.1

Pleiotropic drug resistance protein 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0000245
Physical Location & Seq
Forward (+)
27137825 .. 27144598
6774 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1208900.v1.1.491

Sequence Viewer

Length: 4251 bp
ATGTCTATGGCGGCAGGGCTTGCTGGGGAGGACTTGTCCCGGCAGACCAGCAGTCGGGGGAGCTGGCGGTCTACGAGTGTGAGGGAGATGTGGAACGCGCCGAACGCTTTTCAGCGAAGTGGGCGGCAGCAGGTGACGAATGAGGAGGAGGAGCTCAAGTGGGCGGCCATAGAGAGGCTGCCCACATATGATAGGATGCGGAGGGGGATGCTGAGGCAGACCATGAGCAATGGGAAGCTTGTGGCAGAAGAAATCGATATGGCGAATCTTGGGGAGCAAGAAAAGAAGCGGTTGATGGACAGCATACTTAGGGCTGTGGAGGATGACAACGAGAAGTTCTTGCAGAAACTGAGAGCCAGAAATGAAAGGGTTGGGATTGATGTTCCTAAAGTTGAGGTTAGATTTGAGAAAGTATCAATAGAGGGAGATGCATATGTTGGCAGCAGAGCACTTCCAACACTGCTAAATTCATCCTTGAACATGATAGAGGGAATAATTGGAATGCTTAAACTCTTACCGTCAAAGAAAAGAAACGTTCAGATTCTCCAAGATGTGAGCGGCATCGTGAGGCCATCGAGGATGACACTGCTTCTGGGACCTCCTTCATCGGGAAAAAACAAAACAACACTTCTAAAAGCGCTCGCAGGAAAACTTGACAAGGATCTAAGGGTAACTGGAAAAGTGACCTACTGTGGCCATGAGTTTGAGGAATTTGTGCCTCAGAGAACCTCTGCTTACATTAGCCAGCATGATCTTCATTATGGTGAGATGACAGTTCGTGAAACATTGGACTTTTCCGGACGTTGCCTGGGAGTTGGAACCAGGTATGATATGCTGGTAGAGTTGTCTAGACGGGAGAAAGATTCCGGTATCAAACCAGACCCTGAAATCGATGCAGTCATGAAAGCCACATCTTTGTCTGGCCAAAAAGCGAGTTTGATCACAGATTACGTTCTCAAGATACTCGGATTAGATGTCTGTGCTGATACGGTTGTTGGTGATGACATGAAAAGGGGCATCTCTGGTGGACAAAGGAAACGTGTAACTACCGGAGAAATGTTGGTTGGACCAGCGAAAGCGTTCTTCATGGACGAAATTTCAACAGGGCTGGACAGTTCCACTACCTTTCAGATTGTCAAGTTCATGAGGCAGATGGTTCACATTCTCGATGTGACAATGGTCATCTCTCTTTTGCAGCCTGCACCAGAAACGTGTGATCTCTTTGATGACATTATCCTTATTTCTGAGGGTCAGATTGTGTACCAAGGCCCACGAGAGAATGTGCTTGAATTCTTCGAACATATGGGGTTCAGATGCCCGGAGAGAAAAGGTGTTGCAGATTTCTTGCAAGAAGTGACCTCAAAGAAGGATCAAGAACAATACTGGTTTAAGAAGAACGAACCGTTCAGATATGTCTCTGTAGCTGATTTTGCACAAGGTTTCGCCACTTTTCATGTTGGCCAACGTCTTGTTGAACACCTAAGAGTTCCGTATGACAAAGCAACGGCCCATTCTGCTGCCTTGGTGAAGGAAAAGTACGGAATAAGCAGTATGGAGCTTTTCAAGGCATGCTTTGCAAGGGAATGGTTGCTGATGCAGCGTAACTCATTTGTGTACATATTCAAGATTGTACAGATAGCAATCATGGCTACAATTACTTTCACCGTATTCTTCAGAACAGAAATGAAACCTGGGCAGTTAGGGGATTCGGCAAAATACATGGGAGCATTATTTTTCAGTCTCATTAACGTCATGTTTAATGGAGTGGCAGAGCTTTCAATGACAGTTTTCAGGCTTCCGGTGTTCTTTAAACAAAGGGATGCCTTATTCTTCCCTGGATGGGCTTTTGCCTTGCCCATTTGGCTAACCAGAATTCCCATTTCGTTTATGGAATCCTTCATATGGATCTGTTTGACATACTACACCATTGGATTTGCACCTGCGGCTAGTAGGTTCTTCAAACAGCTCATGGCTTACTTCGGTATACATCAAATGGCACTCGGCCTCTTCCGTTTCATTGCTGGCCTTGGAAGATCAGAGATTCGAGCAAACACTATTGGTTCCTTTGCATTGCTAATAGTGTTTGTCCTAGGAGGCTTTATTGTTTCTAAAAATGACCTCGAGCCGTGGATGCTGTGGAGCTACTATATTTCACCTATGATGTATGGACAAAATGCGATTGCCATCAATGAATTTCTTGACGAAAGATGGAGCACTCCTGTCCCCAACGCCGCTGAAAACACAGTTGGAAAGGTCCTTCTGAAGGGAAGAGGCCTGTTTACCACAGAGACTTGGTTTTGGATTTGTATTGGCGCGCTTTTCGGGTTTTCTATTCTTTTTAATCTTCTTTTCGTTGCAGCATTGACCTTCTTAGACCGTACTGATATGCAAGTGAGAAATCAAGCCAAAAAAGGAATGGTTTTGCCCTTCGAGCCCCTTTCCCTTGCTTTCAACCATATGAACTACTACGTGGATATGCCTCCTGAAATGAAGAGCCAAGGGATTGAAGAGTCGCGACTCCAACTCTTACGAGATGTTAGTGGTGCATTTAGGCCTGGTGTTCTGACTGCATTAGTTGGTGTCAGTGGTGCTGGAAAGACAACCTTGATGGATGTTTTAGCTGGAAGAAAGACTGGTGGGTACATTGAAGGAAGTATTACCATCTCTGGATACCCAAAGAACCAAGCCACATTTGCTCGGGTCAGCGGTTACTGTGAACAGAATGACATTCATTCCCCATACGTTACTGTTTATGAATCTCTCGTATACTCTGCCTGGTTACGTCTTCCCAAGGATGTCACAAAGGATAAACGAAAGATGTTTGTTGATGAGGTCGTAGATTTGGTCGAGCTTAATCCATTGAGGGATGCTTTAGTTGGACTTCCAGGAGTTAATGGACTTTCAACTGAGCAGAGAAAGAGGCTCACTATTGCCGTAGAATTGGTTGCTAATCCATCCATCATCTTCATGGATGAGCCGACATCTGGTCTTGATGCTAGAGCAGCCGCTATTGTTATGCGTACTGTAAGAAACACTGTGGATACAGGACGAACTGTTGTCTGCACTATTCACCAACCTAGCATTGACATTTTCGAGGCTTTTGATGAGCTGTTCCTAATGAAAAGAGGAGGACGAGTGATTTATGCTGGACCCCTAGGTGATCGGTCTCACAAGCTCGTTGAATATTTCGAGGCTATTCCAGGGGTTCCGAAGATCAAAGAGGGTTACAATCCTGCTACCTGGATGTTAGATGTTAGCTCTGCTGCCATTGAGGCTCAAAATGACATAGACTTTGCTGAAATATTTGCAAACTCTGATCTCTATAGGAGAAACCAGGAACTTATCAAGGAACTAAGCATGCCACAACAAGGCTCCAAGGATCTTTACTTCCCCACTCAATTCTCCCAAAGCTTTTTAACTCAATGCAAGGCGTGCTTTTGGAAACAACACTGGTCCTACTGGAGGAATTCGCAGTACAATGCCATTAGGTTTTTCATGACAGTTTCCGTCGGAATTATATTTGGTATTATCTTCTGGAACAAAGGAAAGAAAATGAACACACAGCAAGACATTATGAATCTGTTGGGGGCAGGATACGGTGCTGTTCTTTTCCTTGGAGCGGGCAATGCTTCTGCTGTGCAATCTGTTATTGCTGTTGAACGAACAGTTTTCTACCGTGAAAGAGCTGCTGGGATGTATTCTGAGTTGCCTTATGCATTTTCTCAGGTGGCTATTGAGACACTTTACGTGTTAATCCAAACCTTTGCGTATTCCCTTATTTTGTATGGCATGATTGGGTTCAATTGGAAGGTGGACAAATTTTTGTACTTCTACTACTTCATATTCATGTGCTTCACATATTTCTCCATGTACGGGATGATGGCGGTTGCCCTAACTCCTGGTCCCCAAATTGCTGCAATTGTTATGGGCTTCTTCATGAGCTTCTGGAACTTGTTCTCTGGTTTCCTCGTCCCACGAACGCTAATTCCCATCTGGTGGAGGTGGTACTACTGGGGTTCTCCAATCGCCTGGACAATCTATGGCCTCTTCGCATCTCAAATGGGCGATGTTAAGACTCTAGTCGAAATTCCTGGTGAGAAGTCTAAGCCAGTGAATCAGTTCCTTAAGGACTATTTGGGCTTTGAAGAGGATTTTGTAATCCCCGTAGTGTTTGCTCATGTTGGTTGGGTCCTTCTCTTCTTCTTTCTCTTTGCCTACGGCATCAAGTACCTTAACTTCCAAAGGAGATAA

Protein Analysis

1417

Amino Acids

160.62

Weight (kDa)

8.63

Isoelectric Point (pI)

36.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_trans_N PF14510 107 - 156 1.6e-06 ABC-transporter N-terminal
ABC_tran PF00005 182 - 365 1.1e-11 ABC transporter
ABC2_membrane PF01061 520 - 732 2.9e-44 ABC-2 type transporter
PDR_assoc PF08370 737 - 794 9.8e-22 Plant PDR ABC transporter associated
ABC_tran PF00005 843 - 995 5.2e-20 ABC transporter
ABC2_membrane PF01061 1140 - 1353 1.1e-54 ABC-2 type transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000245)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66950 AT2G36380
fragaria_vesca FvH4_3g29700 FvH4_3g29700 FvH4_3g29700 FvH4_3g29700 FvH4_3g29710 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29760 FvH4_3g29781 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150
malus_domestica MD02G1254900.v1.1 MD03G1119400.v1.1 MD03G1136800.v1.1 MD03G1137000.v1.1 MD04G1187500.v1.1 MD08G1208900.v1.1 MD08G1209000.v1.1 MD11G1159000.v1.1 MD11G1159100.v1.1 MD11G1159200.v1.1 MD12G1020800.v1.1 MD12G1021000.v1.1 MD14G1017900.v1.1 MD14G1018100.v1.1
prunus_persica Prupe.2G084300_v2.0.a1 Prupe.2G084300_v2.0.a1 Prupe.6G121200_v2.0.a1 Prupe.6G121200_v2.0.a1 Prupe.6G121500_v2.0.a1 Prupe.6G121800_v2.0.a1 Prupe.6G121900_v2.0.a1 Prupe.6G122100_v2.0.a1 Prupe.7G115200_v2.0.a1 Prupe.7G115200_v2.0.a1
pyrus_communis pycom02g21460 pycom03g09270 pycom03g09290 pycom07g05130 pycom08g18050 pycom11g12950 pycom11g12960 pycom11g12970 pycom12g01950 pycom12g01980 pycom14g01620 pycom14g01710 pycom14g01720 pycom16g12190
rosa_chinensis RchiOBHm_Chr1g0340571 RchiOBHm_Chr2g0107751 RchiOBHm_Chr3g0472451 RchiOBHm_Chr5g0055051 RchiOBHm_Chr5g0055091 RchiOBHm_Chr5g0055111 RchiOBHm_Chr5g0055121 RchiOBHm_Chr5g0055131 RchiOBHm_Chr5g0062371 RchiOBHm_Chr6g0265121 RchiOBHm_Chr6g0275771 RchiOBHm_Chr7g0187231
rosa_laevigata RLG00000006319 RLG00000013820 RLG00000024078 RLG00000034960 RLG00000034963 RLG00000034965 RLG00000034966 RLG00000034968 RLG00000034970
rosa_multiflora Rmu_co8358859.1_g000001 Rmu_co8422375.1_g000001 Rmu_co8427767.1_g000001 Rmu_co8474941.1_g000001 Rmu_sc0000925.1_g000009 Rmu_sc0001694.1_g000015 Rmu_sc0001694.1_g000022 Rmu_sc0001694.1_g000024 Rmu_sc0001694.1_g000030 Rmu_sc0003993.1_g000001 Rmu_sc0010632.1_g000001 Rmu_sc0035175.1_g000001
rosa_roxburghii Rroxscaffold_1G00025230 Rroxscaffold_1G00025240 Rroxscaffold_1G00025300 Rroxscaffold_1G00025320 Rroxscaffold_1G00025330 Rroxscaffold_1G00025360 Rroxscaffold_1G00025440 Rroxscaffold_1G00033590 Rroxscaffold_6G00408900
rosa_rugosa Rorug03G0125500.1 Rorug03G0125600.1 Rorug05G0290600 Rorug05G0291100 Rorug05G0291200 Rorug05G0291300
rosa_samantha Rh1CG035400 Rh1CG243200 Rh2DG410600 Rh3AG177500 Rh3CG193800 Rh3CG200900 Rh3DG171700 Rh5AG043000 Rh5AG360500 Rh5AG360900 Rh5AG361000 Rh5AG361300 Rh5AG441100 Rh5CG393700 Rh5CG393900 Rh5CG394200 Rh5DG247300 Rh5DG385200 Rh5DG385500 Rh5DG385800 Rh6BG272200 Rh6DG204000 Rh7AG084700 Rh7AG178300
rosa_wichuraiana Rw0G022120 Rw3G016410 Rw5G033910 Rw5G033920 Rw5G033940 Rw5G033960 Rw5G033970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 121, 1948
Acc36I ACCTGC 2 cut(s) 121, 1948
AccB7I CCANNNNNTGG 1 cut(s) 3996
AccBSI CCGCTC 2 cut(s) 558, 3620
AccI GTMKAC 3 cut(s) 71, 1984, 2766
AccII CGCG 3 cut(s) 98, 2315, 2515
AccIII TCCGGA 1 cut(s) 797
AclI AACGTT 1 cut(s) 534
AclWI GGATC 4 cut(s) 669, 1377, 1913, 3387
AcoI YGGCCR 4 cut(s) 165, 694, 922, 1459
AcsI RAATTY 9 cut(s) 466, 710, 1095, 1289, 1872, 2192, 3466, 3818, 4086
AcuI CTGAAG 2 cut(s) 1657, 2282
AfeI AGCGCT 1 cut(s) 639
AflII CTTAAG 1 cut(s) 4124
AflIII ACRYGT 3 cut(s) 1039, 1211, 3747
AhdI GACNNNNNGTC 2 cut(s) 51, 2985
AjuI GAANNNNNNNTTGG 4 cut(s) 1047, 1079, 2229, 2261
AloI GAACNNNNNNTCC 2 cut(s) 3970, 4002
Alw21I GWGCWC 3 cut(s) 156, 451, 2216
Alw26I GTCTC 5 cut(s) 1420, 1745, 2282, 3171, 3731
AlwI GGATC 4 cut(s) 669, 1377, 1913, 3387
AlwNI CAGNNNCTG 2 cut(s) 349, 884
Ama87I CYCGRG 2 cut(s) 2120, 2697
Aor13HI TCCGGA 1 cut(s) 797
Aor51HI AGCGCT 1 cut(s) 639
ApoI RAATTY 9 cut(s) 466, 710, 1095, 1289, 1872, 2192, 3466, 3818, 4086
ArsI GACNNNNNNTTYG 2 cut(s) 3275, 3307
Asp700I GAANNNNTTC 3 cut(s) 1079, 3953, 4118
AspA2I CCTAGG 2 cut(s) 2089, 3154
AspLEI GCGC 4 cut(s) 100, 640, 2315, 2317
AspS9I GGNCC 9 cut(s) 596, 1067, 1268, 1507, 2254, 3149, 3453, 3902, 4189
AsuC2I CCSGG 2 cut(s) 40, 1319
AsuHPI GGTGA 9 cut(s) 145, 776, 1010, 1537, 1654, 2145, 3062, 3170, 4106
AsuII TTCGAA 1 cut(s) 1296
AvaI CYCGRG 2 cut(s) 2120, 2697
AvaII GGWCC 7 cut(s) 596, 1067, 2254, 3149, 3453, 3902, 4189
AvrII CCTAGG 2 cut(s) 2089, 3154
BaeI ACNNNNGTAYC 2 cut(s) 978, 1011
BalI TGGCCA 3 cut(s) 696, 924, 1461
BanII GRGCYC 2 cut(s) 156, 2436
BarI GAAGNNNNNNTAC 3 cut(s) 1520, 1552, 4220
BauI CACGAG 1 cut(s) 1272
BbsI GAAGAC 1 cut(s) 2777
Bbv12I GWGCWC 3 cut(s) 156, 451, 2216
BbvCI CCTCAGC 1 cut(s) 212
BceAI ACGGC 4 cut(s) 1521, 2110, 2918, 4234
BciVI GTATCC 3 cut(s) 2663, 3034, 3587
BclI TGATCA 1 cut(s) 939
BcnI CCSGG 2 cut(s) 40, 1319
BcoDI GTCTC 5 cut(s) 1420, 1745, 2282, 3171, 3731
BfaI CTAG 7 cut(s) 849, 1947, 2090, 2997, 3078, 3155, 4079
BfmI CTRYAG 2 cut(s) 1419, 3322
BfoI RGCGCY 1 cut(s) 641
BfrI CTTAAG 1 cut(s) 4124
BfuAI ACCTGC 2 cut(s) 121, 1948
BfuI GTATCC 3 cut(s) 2663, 3034, 3587
BglI GCCNNNNNGGC 2 cut(s) 1861, 3272
BlnI CCTAGG 2 cut(s) 2089, 3154
Bme18I GGWCC 7 cut(s) 596, 1067, 2254, 3149, 3453, 3902, 4189
BmeRI GACNNNNNGTC 2 cut(s) 51, 2985
BmeT110I CYCGRG 2 cut(s) 2120, 2697
BmgT120I GGNCC 9 cut(s) 596, 1067, 1268, 1507, 2254, 3149, 3453, 3902, 4189
BmiI GGNNCC 8 cut(s) 597, 820, 2062, 3151, 3207, 3373, 3904, 4190
BmrI ACTGGG 1 cut(s) 4021
BmuI ACTGGG 1 cut(s) 4021
BoxI GACNNNNGTC 2 cut(s) 1178, 4079
BpiI GAAGAC 1 cut(s) 2777
BpmI CTGGAG 1 cut(s) 3481
Bpu10I CCTNAGC 1 cut(s) 212
Bpu14I TTCGAA 1 cut(s) 1296
BpuEI CTTGAG 2 cut(s) 140, 941
BpuMI CCSGG 2 cut(s) 40, 1319
Bsa29I ATCGAT 2 cut(s) 255, 891
BsaAI YACGTR 2 cut(s) 2470, 3748
BsaBI GATNNNNATC 2 cut(s) 1640, 2183
BsaI GGTCTC 1 cut(s) 3171
BsaWI WCCGGW 4 cut(s) 797, 866, 1049, 1798
BsaXI ACNNNNNCTCC 6 cut(s) 20, 50, 143, 173, 3120, 3150
Bse1I ACTGG 7 cut(s) 679, 1388, 2638, 3455, 3464, 4016, 4109
Bse3DI GCAATG 4 cut(s) 235, 2016, 2069, 3631
Bse8I GATNNNNATC 2 cut(s) 1640, 2183
BseAI TCCGGA 1 cut(s) 797
BseCI ATCGAT 2 cut(s) 255, 891
BseJI GATNNNNATC 2 cut(s) 1640, 2183
BseMI GCAATG 4 cut(s) 235, 2016, 2069, 3631
BseMII CTCAG 7 cut(s) 203, 341, 734, 1236, 2898, 3693, 3737
BseNI ACTGG 7 cut(s) 679, 1388, 2638, 3455, 3464, 4016, 4109
BsePI GCGCGC 1 cut(s) 2313
BseRI GAGGAG 4 cut(s) 158, 161, 164, 3141
BseYI CCCAGC 2 cut(s) 23, 3689
BsgI GTGCAG 2 cut(s) 1185, 3046
Bsh1236I CGCG 3 cut(s) 98, 2315, 2515
BshVI ATCGAT 2 cut(s) 255, 891
BsiHKAI GWGCWC 3 cut(s) 156, 451, 2216
BsiHKCI CYCGRG 2 cut(s) 2120, 2697
BsiSI CCGG 6 cut(s) 40, 798, 867, 1050, 1319, 1799
BslFI GGGAC 5 cut(s) 22, 609, 2207, 3888, 3956
BsmAI GTCTC 5 cut(s) 1420, 1745, 2282, 3171, 3731
BsmFI GGGAC 5 cut(s) 22, 609, 2207, 3888, 3956
BsmI GAATGC 1 cut(s) 507
Bso31I GGTCTC 1 cut(s) 3171
BsoBI CYCGRG 2 cut(s) 2120, 2697
Bsp119I TTCGAA 1 cut(s) 1296
Bsp1286I GDGCHC 4 cut(s) 156, 451, 2216, 2436
Bsp13I TCCGGA 1 cut(s) 797
Bsp1407I TGTACA 2 cut(s) 1614, 1630
Bsp68I TCGCGA 1 cut(s) 2515
BspCNI CTCAG 7 cut(s) 204, 342, 733, 1237, 2899, 3694, 3736
BspDI ATCGAT 2 cut(s) 255, 891
BspEI TCCGGA 1 cut(s) 797
BspFNI CGCG 3 cut(s) 98, 2315, 2515
BspHI TCATGA 4 cut(s) 900, 1143, 3495, 3936
BspLI GGNNCC 8 cut(s) 597, 820, 2062, 3151, 3207, 3373, 3904, 4190
BspMI ACCTGC 2 cut(s) 121, 1948
BspPI GGATC 4 cut(s) 669, 1377, 1913, 3387
BspQI GCTCTTC 1 cut(s) 2486
BspT104I TTCGAA 1 cut(s) 1296
BspTI CTTAAG 1 cut(s) 4124
BspTNI GGTCTC 1 cut(s) 3171
BsrBI CCGCTC 2 cut(s) 558, 3620
BsrDI GCAATG 4 cut(s) 235, 2016, 2069, 3631
BsrGI TGTACA 2 cut(s) 1614, 1630
BsrI ACTGG 7 cut(s) 679, 1388, 2638, 3455, 3464, 4016, 4109
BssHII GCGCGC 1 cut(s) 2313
BssNAI GTATAC 2 cut(s) 1985, 2767
BssSI CACGAG 1 cut(s) 1272
BssT1I CCWWGG 9 cut(s) 1264, 1521, 2026, 2089, 2497, 2790, 3154, 3375, 3613
Bst1107I GTATAC 2 cut(s) 1985, 2767
Bst2BI CACGAG 1 cut(s) 1272
Bst6I CTCTTC 7 cut(s) 2012, 2263, 2486, 2502, 4052, 4140, 4202
BstAFI CTTAAG 1 cut(s) 4124
BstAPI GCANNNNNTGC 3 cut(s) 20, 1574, 3432
BstAUI TGTACA 2 cut(s) 1614, 1630
BstBAI YACGTR 2 cut(s) 2470, 3748
BstBI TTCGAA 1 cut(s) 1296
BstDSI CCRYGG 1 cut(s) 2126
BstENI CCTNNNNNAGG 2 cut(s) 2261, 3460
BstFNI CGCG 3 cut(s) 98, 2315, 2515
BstH2I RGCGCY 1 cut(s) 641
BstHHI GCGC 4 cut(s) 100, 640, 2315, 2317
BstMAI GTCTC 5 cut(s) 1420, 1745, 2282, 3171, 3731
BstNSI RCATGY 2 cut(s) 1572, 3361
BstPAI GACNNNNGTC 2 cut(s) 1178, 4079
BstSFI CTRYAG 2 cut(s) 1419, 3322
BstUI CGCG 3 cut(s) 98, 2315, 2515
BstV2I GAAGAC 1 cut(s) 2777
BstX2I RGATCY 3 cut(s) 661, 1905, 3379
BstXI CCANNNNNNTGG 1 cut(s) 4029
BstYI RGATCY 3 cut(s) 661, 1905, 3379
BstZ17I GTATAC 2 cut(s) 1985, 2767
Bsu15I ATCGAT 2 cut(s) 255, 891
BsuI GTATCC 3 cut(s) 2663, 3034, 3587
BsuTUI ATCGAT 2 cut(s) 255, 891
BtgI CCRYGG 1 cut(s) 2126
BtgZI GCGATG 1 cut(s) 4080
BtsI GCAGTG 2 cut(s) 458, 584
BtsIMutI CAGTG 6 cut(s) 458, 584, 2590, 3033, 3448, 4116
BtuMI TCGCGA 1 cut(s) 2515
BveI ACCTGC 2 cut(s) 121, 1948
CaiI CAGNNNCTG 2 cut(s) 349, 884
CciI TCATGA 4 cut(s) 900, 1143, 3495, 3936
CfoI GCGC 4 cut(s) 100, 640, 2315, 2317
Cfr13I GGNCC 9 cut(s) 596, 1067, 1268, 1507, 2254, 3149, 3453, 3902, 4189
ClaI ATCGAT 2 cut(s) 255, 891
CsiI ACCWGGT 1 cut(s) 821
DraI TTTAAA 1 cut(s) 1810
DriI GACNNNNNGTC 2 cut(s) 51, 2985
EaeI YGGCCR 4 cut(s) 165, 694, 922, 1459
Eam1104I CTCTTC 7 cut(s) 2012, 2263, 2486, 2502, 4052, 4140, 4202
Eam1105I GACNNNNNGTC 2 cut(s) 51, 2985
EarI CTCTTC 7 cut(s) 2012, 2263, 2486, 2502, 4052, 4140, 4202
Ecl136II GAGCTC 1 cut(s) 154
Eco130I CCWWGG 9 cut(s) 1264, 1521, 2026, 2089, 2497, 2790, 3154, 3375, 3613
Eco147I AGGCCT 2 cut(s) 2274, 2554
Eco24I GRGCYC 2 cut(s) 156, 2436
Eco31I GGTCTC 1 cut(s) 3171
Eco47I GGWCC 7 cut(s) 596, 1067, 2254, 3149, 3453, 3902, 4189
Eco47III AGCGCT 1 cut(s) 639
Eco53kI GAGCTC 1 cut(s) 154
Eco57I CTGAAG 2 cut(s) 1657, 2282
Eco88I CYCGRG 2 cut(s) 2120, 2697
EcoICRI GAGCTC 1 cut(s) 154
EcoNI CCTNNNNNAGG 2 cut(s) 2261, 3460
EcoO109I RGGNCCY 3 cut(s) 596, 2254, 4189
EcoRI GAATTC 3 cut(s) 1289, 1872, 3466
EcoT14I CCWWGG 9 cut(s) 1264, 1521, 2026, 2089, 2497, 2790, 3154, 3375, 3613
EcoT22I ATGCAT 2 cut(s) 433, 3718
EcoT38I GRGCYC 2 cut(s) 156, 2436
ErhI CCWWGG 9 cut(s) 1264, 1521, 2026, 2089, 2497, 2790, 3154, 3375, 3613
FalI AAGNNNNNCTT 6 cut(s) 1556, 1588, 2588, 2620, 3419, 3451
FaqI GGGAC 5 cut(s) 22, 609, 2207, 3888, 3956
FauI CCCGC 1 cut(s) 3613
FauNDI CATATG 5 cut(s) 187, 433, 1302, 1901, 2457
FbaI TGATCA 1 cut(s) 939
FblI GTMKAC 3 cut(s) 71, 1984, 2766
FriOI GRGCYC 2 cut(s) 156, 2436
FspBI CTAG 7 cut(s) 849, 1947, 2090, 2997, 3078, 3155, 4079
GlaI GCGC 4 cut(s) 99, 639, 2314, 2316
GsaI CCCAGC 2 cut(s) 27, 3693
GsuI CTGGAG 1 cut(s) 3481
HaeII RGCGCY 1 cut(s) 641
HapII CCGG 6 cut(s) 40, 798, 867, 1050, 1319, 1799
HhaI GCGC 4 cut(s) 100, 640, 2315, 2317
Hin6I GCGC 4 cut(s) 98, 638, 2313, 2315
HinP1I GCGC 4 cut(s) 98, 638, 2313, 2315
HindIII AAGCTT 2 cut(s) 236, 3409
HpaII CCGG 6 cut(s) 40, 798, 867, 1050, 1319, 1799
HphI GGTGA 9 cut(s) 145, 776, 1010, 1537, 1654, 2145, 3062, 3170, 4106
Hpy99I CGWCG 1 cut(s) 3512
HspAI GCGC 4 cut(s) 98, 638, 2313, 2315
Kpn2I TCCGGA 1 cut(s) 797
Ksp22I TGATCA 1 cut(s) 939
LguI GCTCTTC 1 cut(s) 2486
LmnI GCTCC 9 cut(s) 60, 151, 274, 1555, 1724, 2139, 2211, 3377, 3617
MabI ACCWGGT 1 cut(s) 821
MaeI CTAG 7 cut(s) 849, 1947, 2090, 2997, 3078, 3155, 4079
MbiI CCGCTC 2 cut(s) 558, 3620
MfeI CAATTG 2 cut(s) 3802, 3918
MflI RGATCY 3 cut(s) 661, 1905, 3379
MhlI GDGCHC 4 cut(s) 156, 451, 2216, 2436
MlsI TGGCCA 3 cut(s) 696, 924, 1461
MluNI TGGCCA 3 cut(s) 696, 924, 1461
MlyI GAGTC 3 cut(s) 2511, 2519, 4069
MmeI TCCRAC 7 cut(s) 479, 796, 1045, 2227, 2545, 2857, 3490
Mox20I TGGCCA 3 cut(s) 696, 924, 1461
Mph1103I ATGCAT 2 cut(s) 433, 3718
MroI TCCGGA 1 cut(s) 797
MroXI GAANNNNTTC 3 cut(s) 1079, 3953, 4118
MscI TGGCCA 3 cut(s) 696, 924, 1461
MslI CAYNNNNRTG 3 cut(s) 762, 2966, 3845
Msp20I TGGCCA 3 cut(s) 696, 924, 1461
MspA1I CMGCKG 2 cut(s) 2234, 2706
MspCI CTTAAG 1 cut(s) 4124
MspI CCGG 6 cut(s) 40, 798, 867, 1050, 1319, 1799
MunI CAATTG 2 cut(s) 3802, 3918
Mva1269I GAATGC 1 cut(s) 507
MvnI CGCG 3 cut(s) 98, 2315, 2515
NciI CCSGG 2 cut(s) 40, 1319
NdeI CATATG 5 cut(s) 187, 433, 1302, 1901, 2457
NlaIV GGNNCC 8 cut(s) 597, 820, 2062, 3151, 3207, 3373, 3904, 4190
NmeAIII GCCGAG 1 cut(s) 1980
NmuCI GTSAC 5 cut(s) 133, 682, 1171, 1354, 2797
NruI TCGCGA 1 cut(s) 2515
NsiI ATGCAT 2 cut(s) 433, 3718
NspI RCATGY 2 cut(s) 1572, 3361
NspV TTCGAA 1 cut(s) 1296
PaeI GCATGC 2 cut(s) 1572, 3361
PaeR7I CTCGAG 1 cut(s) 2120
PagI TCATGA 4 cut(s) 900, 1143, 3495, 3936
PaqCI CACCTGC 2 cut(s) 121, 1948
PauI GCGCGC 1 cut(s) 2313
PceI AGGCCT 2 cut(s) 2274, 2554
PciSI GCTCTTC 1 cut(s) 2486
PctI GAATGC 1 cut(s) 507
PdmI GAANNNNTTC 3 cut(s) 1079, 3953, 4118
PfeI GAWTC 9 cut(s) 265, 541, 863, 1706, 1892, 2041, 2756, 3577, 4114
PflMI CCANNNNNTGG 1 cut(s) 3996
PfoI TCCNGGA 1 cut(s) 2884
PleI GAGTC 3 cut(s) 2511, 2518, 4069
PpsI GAGTC 3 cut(s) 2511, 2518, 4069
Ppu21I YACGTR 2 cut(s) 2470, 3748
PpuMI RGGWCCY 3 cut(s) 596, 2254, 4189
PshAI GACNNNNGTC 2 cut(s) 1178, 4079
Psp124BI GAGCTC 1 cut(s) 156
Psp1406I AACGTT 1 cut(s) 534
Psp5II RGGWCCY 3 cut(s) 596, 2254, 4189
PspFI CCCAGC 2 cut(s) 23, 3689
PspN4I GGNNCC 8 cut(s) 597, 820, 2062, 3151, 3207, 3373, 3904, 4190
PspPI GGNCC 9 cut(s) 596, 1067, 1268, 1507, 2254, 3149, 3453, 3902, 4189
PspPPI RGGWCCY 3 cut(s) 596, 2254, 4189
PspXI VCTCGAGB 1 cut(s) 2120
PstNI CAGNNNCTG 2 cut(s) 349, 884
PsuI RGATCY 3 cut(s) 661, 1905, 3379
PteI GCGCGC 1 cut(s) 2313
RruI TCGCGA 1 cut(s) 2515
RseI CAYNNNNRTG 3 cut(s) 762, 2966, 3845
SacI GAGCTC 1 cut(s) 156
SapI GCTCTTC 1 cut(s) 2486
Sau96I GGNCC 9 cut(s) 596, 1067, 1268, 1507, 2254, 3149, 3453, 3902, 4189
SchI GAGTC 3 cut(s) 2511, 2519, 4069
SduI GDGCHC 4 cut(s) 156, 451, 2216, 2436
SexAI ACCWGGT 1 cut(s) 821
SfcI CTRYAG 2 cut(s) 1419, 3322
Sfr274I CTCGAG 1 cut(s) 2120
SfuI TTCGAA 1 cut(s) 1296
SinI GGWCC 7 cut(s) 596, 1067, 2254, 3149, 3453, 3902, 4189
SlaI CTCGAG 1 cut(s) 2120
SmiMI CAYNNNNRTG 3 cut(s) 762, 2966, 3845
SmlI CTYRAG 4 cut(s) 155, 956, 2120, 4124
SmoI CTYRAG 4 cut(s) 155, 956, 2120, 4124
SphI GCATGC 2 cut(s) 1572, 3361
SseBI AGGCCT 2 cut(s) 2274, 2554
SspI AATATT 2 cut(s) 3185, 3303
SspMI CTAG 7 cut(s) 849, 1947, 2090, 2997, 3078, 3155, 4079
SstI GAGCTC 1 cut(s) 156
StuI AGGCCT 2 cut(s) 2274, 2554
StyI CCWWGG 9 cut(s) 1264, 1521, 2026, 2089, 2497, 2790, 3154, 3375, 3613
TaqII GACCGA 1 cut(s) 3153
TatI WGTACW 4 cut(s) 1614, 1630, 3474, 3825
TauI GCSGC 7 cut(s) 14, 127, 167, 561, 1946, 2234, 3008
TfiI GAWTC 9 cut(s) 265, 541, 863, 1706, 1892, 2041, 2756, 3577, 4114
TscAI CASTG 6 cut(s) 465, 591, 2590, 3040, 3455, 4116
TseFI GTSAC 5 cut(s) 133, 682, 1171, 1354, 2797
Tsp45I GTSAC 5 cut(s) 133, 682, 1171, 1354, 2797
TspGWI ACGGA 4 cut(s) 1479, 1554, 2000, 3496
TspRI CASTG 6 cut(s) 465, 591, 2590, 3040, 3455, 4116
Van91I CCANNNNNTGG 1 cut(s) 3996
Vha464I CTTAAG 1 cut(s) 4124
VpaK11BI GGWCC 7 cut(s) 596, 1067, 2254, 3149, 3453, 3902, 4189
XagI CCTNNNNNAGG 2 cut(s) 2261, 3460
XapI RAATTY 9 cut(s) 466, 710, 1095, 1289, 1872, 2192, 3466, 3818, 4086
XbaI TCTAGA 1 cut(s) 848
XceI RCATGY 2 cut(s) 1572, 3361
XcmI CCANNNNNNNNNTGG 3 cut(s) 1885, 2413, 2965
XhoI CTCGAG 1 cut(s) 2120
XmaJI CCTAGG 2 cut(s) 2089, 3154
XmiI GTMKAC 3 cut(s) 71, 1984, 2766
XmnI GAANNNNTTC 3 cut(s) 1079, 3953, 4118
XspI CTAG 7 cut(s) 849, 1947, 2090, 2997, 3078, 3155, 4079
Zsp2I ATGCAT 2 cut(s) 433, 3718
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.