MD11G1159200.v1.1

Pleiotropic drug resistance protein 2-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
Physical Location & Seq
Reverse (-)
15527219 .. 15534395
7177 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1159200.v1.1.491

Sequence Viewer

Length: 4350 bp
ATGGCGGCGGCGTTAGCCGGAGATGATCTGGCCAGGCAGTCGAGTCTGGCCAGGCAGTCGAGCAGCCGGCGGAGCTGGCGGTCGACTAGTGTTCGGGAAATGTGGAACGCGCCGGACGTGTTCCAGCGGAGCGGGCGGCAGCAGGCGGTGGATGAGGAGGAGGAGCTCAAGTGGGCGGCCATAGAAAGGTTGCCCACATATGATAGGATGAGGAGGGGGATGCTGAGGCAGGCCATGAGCAATGGGAGGTTTGTAACTGAAGAAGTCGACGTCGCGAATCTTGGGGCGCAAGACAAGAAGCAGTTGATGGAGAGCATACTTAAGGTTGTGGAGGATGACAATGAAAGGTTCTTGCAGAGGCTCAGAGCCAGAAATGACAGGGTTGGCATTGAGGTTCCTAAGGTTGAGGTTAGATTCCAGAACATATCAATTGAGGGAGATGCATATGTTGGTACCAGAGCACTTCCAACTCTGCTCAATTCCACCTTGAACCAGCTTGAGGGACTAGCTGGATTGATTGGACTCTCACAATCGAAGAAAAGAGTTGTCAAGATACTCCAAGATGTGAGCGGTGTTATTAAACCGTCAAGGATGACGCTGCTTCTTGGACCTCCGTCGTCAGGAAAAACAACACTGCTAAAAGCACTTGCTGGCAAACTCGATAAGGATCTAAGGGTAACTGGGAACGTGACCTATTGTGGCCATGAATTCCATGAATTTGTGCCTCAGAGAACTTCCGCTTATATTAGCCAACATGATCTTCATTATGGTGAGATGACAGTTCGTGAAACATTGGATTTCTCTGGACGTTGCCTGGGAGTTGGAACCAGGTATGATTTGCTGGTAGAGTTGTCTAGACGGGAGAAAGATTCAGGTATCAAACCGGATCCTGAAATTGATGCATTCATGAAAGCTACATCTATGGTTGGCCAGGAAACTAGTTTGATCACAGATTACGTTCTCAAGATACTTGGACTTGATATCTGTGCTGACATTATGGTGGGTGATGACATGAGAAGGGGTATATCCGGTGGACAGAAGAAACGTGTAACTACTGGAGAAATGTTGGTTGGACCTGCGAAAGCATTTTTCATGGATGAAATATCAACGGGGCTGGATAGTTCCACAACCTTTCAGATTGTCAAGTTCATGAAGCAGATGGTTCATATTATGGAAGTGTCAATGGTGATCTCTCTCTTGCAGCCTGCACCTGAGACGTATGATCTGTTTGATGACGTTATGCTTCTTTCTGAGGGTCAGATTGTGTACCACGGTCCACGCGAGAATGTGCTTGAGTTCTTCGAATTTATAGGCTTCAGATGCCCTGACAGAAAAGGTGTTGCAGACTTCTTGCAAGAAGTGACATCAAAGAAGGACCAAGAGCAATACTGGTTTAAGAAGAACCAACCTTACAGATATGTTTCAGTATCTGATTTCGTTCGAGCTTTCCCCACTTTTCATGTTGGCCAACGTCTTGTGGAAGAACTAAGAGTTCCTTACGATAAAAGATCAGTCCATCCTGCTGCTCTAGTGACGGATAAGTATGGAATATCCAATATGGAGCTCTTCAAGGCATGTTTTGCAAGGGAATGGTTGCTGATGAAGCGTAACTCTTTTGTGTACATATTCAAAACTACGCAGATAACAATCATGGCTACAATTGCTCTGACGGTATTCTTAAGAACAGAAATGAAAGCTGGAAAAGCAGAAGATTCGGCAAAATTCTGGGGAGCACTGTTTTTCAGTCTCATTAACGTCATGTTTAACGGAATGGCAGAGCTTGCAATGACAGTTTTCAGGATTCCTGTGTTCTTTAAACAAAGGGATGCGTTGTTTTATCCTGGATGGGCTTTTGGCTTGCCCATTTCACTAACCAGAATCCCCATTTCACTGATGGAATCTGGGATATGGATTGTTTTAACATACTACACAATCGGGTTTGCACCTGCGGCCAGTAGGTTCTTCAAACAGTTTTTGGCTTTCTTCGGTGTACATCAGGTGGCACTTTCCCTTTTCCGTTTTATTGCTGCCCTTGGAAGAACAGAGGTTGTTGCGAGTACAATTGGTTCCTTTACATTGCTACTGGTGTTTGTCCTTGGAGGTTTTGTCGTCGCTAAAGATGACATCAAGTCATGGATGATATGGGGCTACTATGTTTCACCTATGATGTATGGGCAAAATGCAATTGCTATCAATGAGTTTCTTGATAAAAGATGGGGTCAACCTGTCGTCGGTGCCTCTGAAAACACAGTTGGAAAGGTACTTCTGAGAGAAAGAGGACTGTTTACTACGGAGACATGGTATTGGACTTGTATTGGCGCGCTCTTCGGATTTACTGTTCTCTTCAATCTTCTTTTTATTGCTGCACTGACCTACTTAGATCCTCTAAGTGAAACTAAAACTCTAATTGAGAATGATGAAGACTCTGAAGGGAATAAGAAGCGACGATCCAACCCAGAAGGTATTGATATGCAAGTAAGAAATTCTCAAGGAAATAATCAAGCCAAACGAGGAATGGTTTTACCCTTCCAGCCCCTCTCACTCGCTTTCAACCATGTGAATTACTATGTGGATATGCCTGCCGAAATGAAGAGCCAAGGGATTGAAGAGACCCGACTCCAACTTCTACGAGATGTCAGTGGTGCATTTAGGCCTGGTGTTTTGACTGCATTAGTTGGTGTCAGCGGTGCTGGAAAGACAACCTTGATGGATGTCTTAGCTGGAAGAAAGACCGGCGGGTACATTGAAGGAAGTATTACCATCTCTGGTTACCCAAAGAACCAAGCCACATTTGCTCGAGTCAGCGGTTACTGTGAACAAACTGATATTCATTCACCATTTGTTACTGTATATGAGTCTCTCCTATACTCTGCCTGGCTGCGTCTTGCTAAAGATGTCAAGACCGAAACACGAAAGATGTTTGTTGGTGAGGTTATGGATTTAGTTGAGCTTAACCCATTGAGAAATGCTTTAGTTGGACTTCCGGGAGTTGATGGACTTTCAACTGAACAGAGAAAGAGGCTCACTATTGCTGTAGAATTGGTTGCCAACCCTTCCATCATCTTCATGGATGAGCCGACCTCAGGTCTTGATGCTAGAGCAGCCGCCATTGTTATGCGTACTGTAAGAAACACCGTGGATACAGGACGAACTGTTGTTTGCACAATTCACCAGCCTAGCATTGACATTTTTGAAGCTTTTGATGAGCTTTTCTTGATGAAAAGAGGAGGGCAGGTGATTTATGCCGGTCCTCTAGGTCGCCAGTCTCACAAACTTGTTGAATACTTTGAGGCTATTCCAGGGGTTGCAAAGATCAAAGAGGGTTACAATCCAGCTACCTGGATGTTGGAGGTCAGCTCGGCTGCTGTTGAGGCTCAAAATGATGTGGACTTTGCAGAAATATTTGCGAACTCTCATCAATATAGGAGAAATCAAGAACTTATCAAGGAACTAAGCATGCCAGAACCAGGCTCCAACGATCTTTATTTCCCTACCCAATACTCCCAAAGCTTTGTAACACAATGCAAGGCATGCTTCTGGAAACAACATTGGTCGTACTGGAGAAACTCACGATACAATGCCATTAGGTTTTTCATGACAATCTGCATCGGAGTATTATTTGGTGTTATCTTCTGGGGCAAAGGAGACAAGATACACAAACAACAAGACTTGATCAATCTTTTGGGAGCTACCTATTCTGCTGTCCTTTTCCTTGGAGCTAGCAATGCATCTGCTGTGCAATCTGTGGTTGCGGTTGAACGAACAGTTTTCTATCGTGAAAGAGCAGCTGGAATGTATTCAGAGTTGCCTTATGCATTTGCTCAGGTGGCTATTGAGACAATTTACGTTGCAATCCAAACCTTCATCTATTCCTGCCTTCTGTTTTTCATGATCGGATACACTTTCAAGGTGGAGAAGTTTTTGTACTTCTACTACTTCATCTTCATGTGCTTCACCTACTTCTCTATGTACGGAATGATGGTTGTTGCCCTGACTCCTGGCCATCAAATTGCTGCAATTGTTATGTCATTCTTCTTGAGTTTCTGGAACTTGTTCTCAGGCTTCCTCATTCCTAGGCCGCTAATTCCTATCTGGTGGAGGTGGTACTACTGGGGTTCACCCGTTGCCTGGACAATTTACGGTATCTTCACATCTCAAGTTGGTGACATGAAGACCGAGGTCAGTAGTCCAATTCAAGAACAACAAAGAATTGATGTATTCCTCAAGAGCTACTTAGGTTTTGACTACGATTTTCTGATCCCTGTTGTCATCGCTCATCTTGGTTGGGTCCTCCTCTTCTTCTTCGTCTTTGCCTACGGCATCAAGTACCTTAACTTCCAAAGGAGATAA

Protein Analysis

1450

Amino Acids

164.31

Weight (kDa)

8.43

Isoelectric Point (pI)

38.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_trans_N PF14510 112 - 160 8.7e-08 ABC-transporter N-terminal
ABC_tran PF00005 186 - 367 3e-13 ABC transporter
ABC2_membrane_7 PF19055 401 - 453 4.1e-06 ABC-2 type transporter
ABC2_membrane PF01061 522 - 734 1.8e-45 ABC-2 type transporter
PDR_assoc PF08370 739 - 803 2.3e-23 Plant PDR ABC transporter associated
ABC_tran PF00005 876 - 1028 3.7e-19 ABC transporter
ABC2_membrane PF01061 1173 - 1384 8.8e-54 ABC-2 type transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000245)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66950 AT2G36380
fragaria_vesca FvH4_3g29700 FvH4_3g29700 FvH4_3g29700 FvH4_3g29700 FvH4_3g29710 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29760 FvH4_3g29781 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150
malus_domestica MD02G1254900.v1.1 MD03G1119400.v1.1 MD03G1136800.v1.1 MD03G1137000.v1.1 MD04G1187500.v1.1 MD08G1208900.v1.1 MD08G1209000.v1.1 MD11G1159000.v1.1 MD11G1159100.v1.1 MD11G1159200.v1.1 MD12G1020800.v1.1 MD12G1021000.v1.1 MD14G1017900.v1.1 MD14G1018100.v1.1
prunus_persica Prupe.2G084300_v2.0.a1 Prupe.2G084300_v2.0.a1 Prupe.6G121200_v2.0.a1 Prupe.6G121200_v2.0.a1 Prupe.6G121500_v2.0.a1 Prupe.6G121800_v2.0.a1 Prupe.6G121900_v2.0.a1 Prupe.6G122100_v2.0.a1 Prupe.7G115200_v2.0.a1 Prupe.7G115200_v2.0.a1
pyrus_communis pycom02g21460 pycom03g09270 pycom03g09290 pycom07g05130 pycom08g18050 pycom11g12950 pycom11g12960 pycom11g12970 pycom12g01950 pycom12g01980 pycom14g01620 pycom14g01710 pycom14g01720 pycom16g12190
rosa_chinensis RchiOBHm_Chr1g0340571 RchiOBHm_Chr2g0107751 RchiOBHm_Chr3g0472451 RchiOBHm_Chr5g0055051 RchiOBHm_Chr5g0055091 RchiOBHm_Chr5g0055111 RchiOBHm_Chr5g0055121 RchiOBHm_Chr5g0055131 RchiOBHm_Chr5g0062371 RchiOBHm_Chr6g0265121 RchiOBHm_Chr6g0275771 RchiOBHm_Chr7g0187231
rosa_laevigata RLG00000006319 RLG00000013820 RLG00000024078 RLG00000034960 RLG00000034963 RLG00000034965 RLG00000034966 RLG00000034968 RLG00000034970
rosa_multiflora Rmu_co8358859.1_g000001 Rmu_co8422375.1_g000001 Rmu_co8427767.1_g000001 Rmu_co8474941.1_g000001 Rmu_sc0000925.1_g000009 Rmu_sc0001694.1_g000015 Rmu_sc0001694.1_g000022 Rmu_sc0001694.1_g000024 Rmu_sc0001694.1_g000030 Rmu_sc0003993.1_g000001 Rmu_sc0010632.1_g000001 Rmu_sc0035175.1_g000001
rosa_roxburghii Rroxscaffold_1G00025230 Rroxscaffold_1G00025240 Rroxscaffold_1G00025300 Rroxscaffold_1G00025320 Rroxscaffold_1G00025330 Rroxscaffold_1G00025360 Rroxscaffold_1G00025440 Rroxscaffold_1G00033590 Rroxscaffold_6G00408900
rosa_rugosa Rorug03G0125500.1 Rorug03G0125600.1 Rorug05G0290600 Rorug05G0291100 Rorug05G0291200 Rorug05G0291300
rosa_samantha Rh1CG035400 Rh1CG243200 Rh2DG410600 Rh3AG177500 Rh3CG193800 Rh3CG200900 Rh3DG171700 Rh5AG043000 Rh5AG360500 Rh5AG360900 Rh5AG361000 Rh5AG361300 Rh5AG441100 Rh5CG393700 Rh5CG393900 Rh5CG394200 Rh5DG247300 Rh5DG385200 Rh5DG385500 Rh5DG385800 Rh6BG272200 Rh6DG204000 Rh7AG084700 Rh7AG178300
rosa_wichuraiana Rw0G022120 Rw3G016410 Rw5G033910 Rw5G033920 Rw5G033940 Rw5G033960 Rw5G033970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 1954, 3223
AatII GACGTC 1 cut(s) 273
Acc36I ACCTGC 3 cut(s) 1084, 1954, 3223
Acc65I GGTACC 1 cut(s) 452
AccB1I GGYRCC 2 cut(s) 452, 2234
AccBSI CCGCTC 2 cut(s) 132, 570
AccI GTMKAC 2 cut(s) 83, 267
AccII CGCG 4 cut(s) 110, 275, 1281, 2321
AclWI GGATC 6 cut(s) 675, 881, 894, 2375, 2442, 4252
AcoI YGGCCR 8 cut(s) 30, 48, 177, 700, 928, 1465, 1950, 4000
AcsI RAATTY 5 cut(s) 707, 716, 1304, 1721, 2482
AcuI CTGAAG 3 cut(s) 279, 1300, 2448
AcyI GRCGYC 1 cut(s) 270
AfiI CCNNNNNNNGG 7 cut(s) 186, 499, 620, 2231, 3083, 3467, 4128
AflII CTTAAG 2 cut(s) 320, 1678
AflIII ACRYGT 2 cut(s) 117, 1045
AhdI GACNNNNNGTC 2 cut(s) 2128, 3084
AhlI ACTAGT 2 cut(s) 86, 938
AjiI CACGTC 1 cut(s) 118
AjuI GAANNNNNNNTTGG 6 cut(s) 744, 776, 1053, 1085, 2235, 2267
AloI GAACNNNNNNTCC 2 cut(s) 2322, 2354
Alw21I GWGCWC 4 cut(s) 168, 463, 1566, 1735
Alw26I GTCTC 8 cut(s) 1208, 1751, 2288, 2603, 2862, 3270, 3639, 3830
AlwI GGATC 6 cut(s) 675, 881, 894, 2375, 2442, 4252
AlwNI CAGNNNCTG 1 cut(s) 1430
Ama87I CYCGRG 1 cut(s) 2796
ApoI RAATTY 5 cut(s) 707, 716, 1304, 1721, 2482
Asp700I GAANNNNTTC 2 cut(s) 3796, 4052
Asp718I GGTACC 1 cut(s) 452
AspA2I CCTAGG 1 cut(s) 4073
AspLEI GCGC 4 cut(s) 112, 289, 2321, 2323
AspS9I GGNCC 6 cut(s) 608, 1073, 1274, 1375, 3248, 4288
AsuC2I CCSGG 1 cut(s) 2985
AsuII TTCGAA 1 cut(s) 1302
AsuNHI GCTAGC 1 cut(s) 3719
AvaI CYCGRG 1 cut(s) 2796
AvaII GGWCC 6 cut(s) 608, 1073, 1274, 1375, 3248, 4288
AvrII CCTAGG 1 cut(s) 4073
AxyI CCTNAGG 2 cut(s) 399, 3082
BalI TGGCCA 6 cut(s) 32, 50, 702, 930, 1467, 4002
BamHI GGATCC 1 cut(s) 886
BanI GGYRCC 2 cut(s) 452, 2234
BanII GRGCYC 2 cut(s) 168, 1566
BarI GAAGNNNNNNTAC 3 cut(s) 3908, 3940, 4319
BbsI GAAGAC 2 cut(s) 2427, 4178
Bbv12I GWGCWC 4 cut(s) 168, 463, 1566, 1735
BbvCI CCTCAGC 1 cut(s) 224
BceAI ACGGC 1 cut(s) 4333
BcgI CGANNNNNNTGC 2 cut(s) 1695, 1729
BciVI GTATCC 2 cut(s) 3133, 3890
BclI TGATCA 2 cut(s) 945, 3672
BcnI CCSGG 1 cut(s) 2985
BcoDI GTCTC 8 cut(s) 1208, 1751, 2288, 2603, 2862, 3270, 3639, 3830
BcuI ACTAGT 2 cut(s) 86, 938
BfmI CTRYAG 1 cut(s) 3033
BfrI CTTAAG 2 cut(s) 320, 1678
BfuAI ACCTGC 3 cut(s) 1084, 1954, 3223
BfuI GTATCC 2 cut(s) 3133, 3890
BlnI CCTAGG 1 cut(s) 4073
Bme18I GGWCC 6 cut(s) 608, 1073, 1274, 1375, 3248, 4288
BmeRI GACNNNNNGTC 2 cut(s) 2128, 3084
BmeT110I CYCGRG 1 cut(s) 2796
BmgBI CACGTC 1 cut(s) 118
BmgT120I GGNCC 6 cut(s) 608, 1073, 1274, 1375, 3248, 4288
BmiI GGNNCC 8 cut(s) 396, 454, 826, 888, 2068, 2236, 3472, 4289
BmrI ACTGGG 2 cut(s) 690, 4120
BmsI GCATC 9 cut(s) 210, 430, 889, 1310, 1816, 3082, 3615, 3737, 4329
BmtI GCTAGC 1 cut(s) 3723
BmuI ACTGGG 2 cut(s) 690, 4120
BoxI GACNNNNGTC 2 cut(s) 613, 4178
BpiI GAAGAC 2 cut(s) 2427, 4178
BplI GAGNNNNNCTC 4 cut(s) 3065, 3097, 3341, 3373
BpmI CTGGAG 2 cut(s) 1077, 3580
Bpu10I CCTNAGC 2 cut(s) 224, 3822
Bpu14I TTCGAA 1 cut(s) 1302
BpuEI CTTGAG 8 cut(s) 152, 518, 947, 1313, 2472, 4057, 4140, 4208
BpuMI CCSGG 1 cut(s) 2985
BsaBI GATNNNNATC 2 cut(s) 666, 1646
BsaHI GRCGYC 1 cut(s) 270
BsaI GGTCTC 1 cut(s) 2603
BsaWI WCCGGW 2 cut(s) 883, 1028
BsaXI ACNNNNNCTCC 8 cut(s) 155, 185, 2091, 2121, 2285, 2315, 3219, 3249
Bsc4I CCNNNNNNNGG 7 cut(s) 186, 499, 620, 2231, 3083, 3467, 4128
Bse118I RCCGGY 3 cut(s) 66, 2732, 3245
Bse1I ACTGG 8 cut(s) 685, 1060, 1394, 1953, 2088, 3262, 3563, 4115
Bse21I CCTNAGG 2 cut(s) 399, 3082
Bse3DI GCAATG 4 cut(s) 247, 1791, 2075, 3730
Bse8I GATNNNNATC 2 cut(s) 666, 1646
BseJI GATNNNNATC 2 cut(s) 666, 1646
BseLI CCNNNNNNNGG 7 cut(s) 186, 499, 620, 2231, 3083, 3467, 4128
BseMI GCAATG 4 cut(s) 247, 1791, 2075, 3730
BseMII CTCAG 9 cut(s) 215, 376, 740, 1203, 1242, 2258, 3096, 3836, 4071
BseNI ACTGG 8 cut(s) 685, 1060, 1394, 1953, 2088, 3262, 3563, 4115
BsePI GCGCGC 1 cut(s) 2319
BseRI GAGGAG 6 cut(s) 170, 173, 176, 226, 3240, 4283
BsgI GTGCAG 2 cut(s) 1191, 2349
Bsh1236I CGCG 4 cut(s) 110, 275, 1281, 2321
Bsh1285I CGRYCG 1 cut(s) 83
BshNI GGYRCC 2 cut(s) 452, 2234
BsiEI CGRYCG 1 cut(s) 83
BsiHKAI GWGCWC 4 cut(s) 168, 463, 1566, 1735
BsiHKCI CYCGRG 1 cut(s) 2796
BsiSI CCGG 8 cut(s) 18, 67, 113, 884, 1029, 2733, 2984, 3246
BslFI GGGAC 1 cut(s) 516
BslI CCNNNNNNNGG 7 cut(s) 186, 499, 620, 2231, 3083, 3467, 4128
BsmAI GTCTC 8 cut(s) 1208, 1751, 2288, 2603, 2862, 3270, 3639, 3830
BsmBI CGTCTC 1 cut(s) 1208
BsmFI GGGAC 1 cut(s) 516
BsmI GAATGC 1 cut(s) 902
Bso31I GGTCTC 1 cut(s) 2603
BsoBI CYCGRG 1 cut(s) 2796
Bsp119I TTCGAA 1 cut(s) 1302
Bsp1286I GDGCHC 4 cut(s) 168, 463, 1566, 1735
Bsp1407I TGTACA 2 cut(s) 1620, 1990
Bsp68I TCGCGA 1 cut(s) 275
BspCNI CTCAG 9 cut(s) 216, 375, 739, 1204, 1243, 2259, 3095, 3835, 4070
BspFNI CGCG 4 cut(s) 110, 275, 1281, 2321
BspHI TCATGA 4 cut(s) 906, 1149, 3594, 3888
BspLI GGNNCC 8 cut(s) 396, 454, 826, 888, 2068, 2236, 3472, 4289
BspMI ACCTGC 3 cut(s) 1084, 1954, 3223
BspOI GCTAGC 1 cut(s) 3723
BspPI GGATC 6 cut(s) 675, 881, 894, 2375, 2442, 4252
BspQI GCTCTTC 3 cut(s) 1571, 2330, 2585
BspT104I TTCGAA 1 cut(s) 1302
BspT107I GGYRCC 2 cut(s) 452, 2234
BspTI CTTAAG 2 cut(s) 320, 1678
BspTNI GGTCTC 1 cut(s) 2603
BsrBI CCGCTC 2 cut(s) 132, 570
BsrDI GCAATG 4 cut(s) 247, 1791, 2075, 3730
BsrFI RCCGGY 3 cut(s) 66, 2732, 3245
BsrGI TGTACA 2 cut(s) 1620, 1990
BsrI ACTGG 8 cut(s) 685, 1060, 1394, 1953, 2088, 3262, 3563, 4115
BssAI RCCGGY 3 cut(s) 66, 2732, 3245
BssHII GCGCGC 1 cut(s) 2319
BssNI GRCGYC 1 cut(s) 270
BssT1I CCWWGG 5 cut(s) 2032, 2095, 2596, 3712, 4073
Bst6I CTCTTC 6 cut(s) 1571, 2330, 2348, 2585, 2601, 4301
BstACI GRCGYC 1 cut(s) 270
BstAFI CTTAAG 2 cut(s) 320, 1678
BstAPI GCANNNNNTGC 3 cut(s) 1580, 1781, 3531
BstAUI TGTACA 2 cut(s) 1620, 1990
BstBI TTCGAA 1 cut(s) 1302
BstDSI CCRYGG 2 cut(s) 1270, 3135
BstEII GGTNACC 1 cut(s) 2768
BstFNI CGCG 4 cut(s) 110, 275, 1281, 2321
BstHHI GCGC 4 cut(s) 112, 289, 2321, 2323
BstMAI GTCTC 8 cut(s) 1208, 1751, 2288, 2603, 2862, 3270, 3639, 3830
BstMCI CGRYCG 1 cut(s) 83
BstNSI RCATGY 3 cut(s) 1578, 3460, 3534
BstPAI GACNNNNGTC 2 cut(s) 613, 4178
BstPI GGTNACC 1 cut(s) 2768
BstSFI CTRYAG 1 cut(s) 3033
BstUI CGCG 4 cut(s) 110, 275, 1281, 2321
BstV2I GAAGAC 2 cut(s) 2427, 4178
BstX2I RGATCY 3 cut(s) 667, 886, 2380
BstXI CCANNNNNNTGG 1 cut(s) 3339
BstYI RGATCY 3 cut(s) 667, 886, 2380
Bsu36I CCTNAGG 2 cut(s) 399, 3082
BsuI GTATCC 2 cut(s) 3133, 3890
BtgI CCRYGG 2 cut(s) 1270, 3135
BtgZI GCGATG 1 cut(s) 4255
BtrI CACGTC 1 cut(s) 118
BtsI GCAGTG 1 cut(s) 632
BtsIMutI CAGTG 5 cut(s) 632, 1733, 1889, 2366, 2644
BtuMI TCGCGA 1 cut(s) 275
BveI ACCTGC 3 cut(s) 1084, 1954, 3223
CaiI CAGNNNCTG 1 cut(s) 1430
CciI TCATGA 4 cut(s) 906, 1149, 3594, 3888
CfoI GCGC 4 cut(s) 112, 289, 2321, 2323
Cfr10I RCCGGY 3 cut(s) 66, 2732, 3245
Cfr13I GGNCC 6 cut(s) 608, 1073, 1274, 1375, 3248, 4288
CseI GACGC 2 cut(s) 604, 2870
CsiI ACCWGGT 1 cut(s) 827
DraI TTTAAA 1 cut(s) 1816
DriI GACNNNNNGTC 2 cut(s) 2128, 3084
EaeI YGGCCR 8 cut(s) 30, 48, 177, 700, 928, 1465, 1950, 4000
Eam1104I CTCTTC 6 cut(s) 1571, 2330, 2348, 2585, 2601, 4301
Eam1105I GACNNNNNGTC 2 cut(s) 2128, 3084
EarI CTCTTC 6 cut(s) 1571, 2330, 2348, 2585, 2601, 4301
EciI GGCGGA 1 cut(s) 85
Ecl136II GAGCTC 2 cut(s) 166, 1564
Eco130I CCWWGG 5 cut(s) 2032, 2095, 2596, 3712, 4073
Eco147I AGGCCT 1 cut(s) 2653
Eco24I GRGCYC 2 cut(s) 168, 1566
Eco31I GGTCTC 1 cut(s) 2603
Eco32I GATATC 1 cut(s) 982
Eco47I GGWCC 6 cut(s) 608, 1073, 1274, 1375, 3248, 4288
Eco53kI GAGCTC 2 cut(s) 166, 1564
Eco57I CTGAAG 3 cut(s) 279, 1300, 2448
Eco81I CCTNAGG 2 cut(s) 399, 3082
Eco88I CYCGRG 1 cut(s) 2796
Eco91I GGTNACC 1 cut(s) 2768
EcoICRI GAGCTC 2 cut(s) 166, 1564
EcoO109I RGGNCCY 1 cut(s) 4288
EcoO65I GGTNACC 1 cut(s) 2768
EcoRI GAATTC 1 cut(s) 707
EcoRV GATATC 1 cut(s) 982
EcoT14I CCWWGG 5 cut(s) 2032, 2095, 2596, 3712, 4073
EcoT22I ATGCAT 4 cut(s) 445, 904, 3730, 3817
EcoT38I GRGCYC 2 cut(s) 168, 1566
ErhI CCWWGG 5 cut(s) 2032, 2095, 2596, 3712, 4073
Esp3I CGTCTC 1 cut(s) 1208
FalI AAGNNNNNCTT 8 cut(s) 1480, 1512, 2687, 2719, 3518, 3550, 4217, 4249
FaqI GGGAC 1 cut(s) 516
FauI CCCGC 2 cut(s) 125, 2729
FauNDI CATATG 2 cut(s) 199, 445
FbaI TGATCA 2 cut(s) 945, 3672
FblI GTMKAC 2 cut(s) 83, 267
FriOI GRGCYC 2 cut(s) 168, 1566
GlaI GCGC 4 cut(s) 111, 288, 2320, 2322
GsuI CTGGAG 2 cut(s) 1077, 3580
HapII CCGG 8 cut(s) 18, 67, 113, 884, 1029, 2733, 2984, 3246
HgaI GACGC 2 cut(s) 604, 2870
HhaI GCGC 4 cut(s) 112, 289, 2321, 2323
Hin1I GRCGYC 1 cut(s) 270
Hin6I GCGC 4 cut(s) 110, 287, 2319, 2321
HinP1I GCGC 4 cut(s) 110, 287, 2319, 2321
HincII GTYRAC 3 cut(s) 84, 268, 2222
HindII GTYRAC 3 cut(s) 84, 268, 2222
HindIII AAGCTT 2 cut(s) 3195, 3508
HpaII CCGG 8 cut(s) 18, 67, 113, 884, 1029, 2733, 2984, 3246
Hpy99I CGWCG 6 cut(s) 272, 275, 619, 2114, 2234, 2448
HpyAV CCTTC 9 cut(s) 1011, 1366, 2423, 2453, 2536, 2741, 3063, 3871, 3887
Hsp92I GRCGYC 1 cut(s) 270
HspAI GCGC 4 cut(s) 110, 287, 2319, 2321
KpnI GGTACC 1 cut(s) 456
KroI GCCGGC 1 cut(s) 66
KroNI GCCGGC 1 cut(s) 68
Ksp22I TGATCA 2 cut(s) 945, 3672
LguI GCTCTTC 3 cut(s) 1571, 2330, 2585
LmnI GCTCC 8 cut(s) 72, 129, 163, 1561, 1730, 3476, 3686, 3716
LweI GCATC 9 cut(s) 210, 430, 889, 1310, 1816, 3082, 3615, 3737, 4329
MabI ACCWGGT 1 cut(s) 827
MbiI CCGCTC 2 cut(s) 132, 570
MfeI CAATTG 5 cut(s) 429, 1659, 2061, 2184, 4017
MflI RGATCY 3 cut(s) 667, 886, 2380
MhlI GDGCHC 4 cut(s) 168, 463, 1566, 1735
MlsI TGGCCA 6 cut(s) 32, 50, 702, 930, 1467, 4002
MluNI TGGCCA 6 cut(s) 32, 50, 702, 930, 1467, 4002
MlyI GAGTC 7 cut(s) 52, 516, 2417, 2610, 2808, 2864, 3988
MmeI TCCRAC 9 cut(s) 491, 802, 1051, 2233, 2475, 2644, 2956, 3327, 3498
Mox20I TGGCCA 6 cut(s) 32, 50, 702, 930, 1467, 4002
Mph1103I ATGCAT 4 cut(s) 445, 904, 3730, 3817
MroNI GCCGGC 1 cut(s) 66
MroXI GAANNNNTTC 2 cut(s) 3796, 4052
MscI TGGCCA 6 cut(s) 32, 50, 702, 930, 1467, 4002
MslI CAYNNNNRTG 5 cut(s) 768, 998, 3065, 3113, 3944
Msp20I TGGCCA 6 cut(s) 32, 50, 702, 930, 1467, 4002
MspA1I CMGCKG 4 cut(s) 127, 2685, 2805, 3788
MspCI CTTAAG 2 cut(s) 320, 1678
MspI CCGG 8 cut(s) 18, 67, 113, 884, 1029, 2733, 2984, 3246
MunI CAATTG 5 cut(s) 429, 1659, 2061, 2184, 4017
Mva1269I GAATGC 1 cut(s) 902
MvnI CGCG 4 cut(s) 110, 275, 1281, 2321
NaeI GCCGGC 1 cut(s) 68
NciI CCSGG 1 cut(s) 2985
NdeI CATATG 2 cut(s) 199, 445
NgoMIV GCCGGC 1 cut(s) 66
NheI GCTAGC 1 cut(s) 3719
NlaIV GGNNCC 8 cut(s) 396, 454, 826, 888, 2068, 2236, 3472, 4289
NmeAIII GCCGAG 1 cut(s) 3338
NmuCI GTSAC 4 cut(s) 688, 1360, 1531, 4163
NruI TCGCGA 1 cut(s) 275
NsiI ATGCAT 4 cut(s) 445, 904, 3730, 3817
NspI RCATGY 3 cut(s) 1578, 3460, 3534
NspV TTCGAA 1 cut(s) 1302
PaeI GCATGC 2 cut(s) 3460, 3534
PaeR7I CTCGAG 1 cut(s) 2796
PagI TCATGA 4 cut(s) 906, 1149, 3594, 3888
PaqCI CACCTGC 2 cut(s) 1954, 3223
PauI GCGCGC 1 cut(s) 2319
PceI AGGCCT 1 cut(s) 2653
PciSI GCTCTTC 3 cut(s) 1571, 2330, 2585
PcsI WCGNNNNNNNCGW 2 cut(s) 114, 1278
PctI GAATGC 1 cut(s) 902
PdiI GCCGGC 1 cut(s) 68
PdmI GAANNNNTTC 2 cut(s) 3796, 4052
PfeI GAWTC 7 cut(s) 277, 414, 869, 1712, 1801, 1878, 1898
PfoI TCCNGGA 2 cut(s) 1840, 2983
PleI GAGTC 7 cut(s) 51, 516, 2417, 2610, 2807, 2863, 3988
PpsI GAGTC 7 cut(s) 51, 516, 2417, 2610, 2807, 2863, 3988
PpuMI RGGWCCY 1 cut(s) 4288
PshAI GACNNNNGTC 2 cut(s) 613, 4178
Psp124BI GAGCTC 2 cut(s) 168, 1566
Psp5II RGGWCCY 1 cut(s) 4288
PspEI GGTNACC 1 cut(s) 2768
PspN4I GGNNCC 8 cut(s) 396, 454, 826, 888, 2068, 2236, 3472, 4289
PspPI GGNCC 6 cut(s) 608, 1073, 1274, 1375, 3248, 4288
PspPPI RGGWCCY 1 cut(s) 4288
PspXI VCTCGAGB 1 cut(s) 2796
PsrI GAACNNNNNNTAC 4 cut(s) 1394, 1426, 2050, 2082
PstNI CAGNNNCTG 1 cut(s) 1430
PsuI RGATCY 3 cut(s) 667, 886, 2380
PteI GCGCGC 1 cut(s) 2319
PvuII CAGCTG 1 cut(s) 3788
RruI TCGCGA 1 cut(s) 275
RseI CAYNNNNRTG 5 cut(s) 768, 998, 3065, 3113, 3944
SacI GAGCTC 2 cut(s) 168, 1566
SalI GTCGAC 2 cut(s) 82, 266
SapI GCTCTTC 3 cut(s) 1571, 2330, 2585
Sau96I GGNCC 6 cut(s) 608, 1073, 1274, 1375, 3248, 4288
SchI GAGTC 7 cut(s) 52, 516, 2417, 2610, 2808, 2864, 3988
SduI GDGCHC 4 cut(s) 168, 463, 1566, 1735
SexAI ACCWGGT 1 cut(s) 827
SfaNI GCATC 9 cut(s) 210, 430, 889, 1310, 1816, 3082, 3615, 3737, 4329
SfcI CTRYAG 1 cut(s) 3033
Sfr274I CTCGAG 1 cut(s) 2796
SfuI TTCGAA 1 cut(s) 1302
SinI GGWCC 6 cut(s) 608, 1073, 1274, 1375, 3248, 4288
SlaI CTCGAG 1 cut(s) 2796
SmiMI CAYNNNNRTG 5 cut(s) 768, 998, 3065, 3113, 3944
SpeI ACTAGT 2 cut(s) 86, 938
SphI GCATGC 2 cut(s) 3460, 3534
SseBI AGGCCT 1 cut(s) 2653
SspI AATATT 1 cut(s) 3402
SstI GAGCTC 2 cut(s) 168, 1566
StuI AGGCCT 1 cut(s) 2653
StyI CCWWGG 5 cut(s) 2032, 2095, 2596, 3712, 4073
TaqI TCGA 9 cut(s) 41, 59, 83, 267, 533, 660, 1302, 1441, 2797
TaqII GACCGA 2 cut(s) 2918, 4190
TatI WGTACW 4 cut(s) 1620, 1990, 2057, 3924
TauI GCSGC 7 cut(s) 8, 11, 139, 179, 1952, 3107, 4081
TfiI GAWTC 7 cut(s) 277, 414, 869, 1712, 1801, 1878, 1898
TscAI CASTG 5 cut(s) 639, 1740, 1896, 2373, 2644
TseFI GTSAC 4 cut(s) 688, 1360, 1531, 4163
Tsp45I GTSAC 4 cut(s) 688, 1360, 1531, 4163
TspGWI ACGGA 6 cut(s) 603, 1550, 1782, 2006, 2306, 3987
TspRI CASTG 5 cut(s) 639, 1740, 1896, 2373, 2644
Vha464I CTTAAG 2 cut(s) 320, 1678
VpaK11BI GGWCC 6 cut(s) 608, 1073, 1274, 1375, 3248, 4288
XapI RAATTY 5 cut(s) 707, 716, 1304, 1721, 2482
XbaI TCTAGA 1 cut(s) 854
XceI RCATGY 3 cut(s) 1578, 3460, 3534
XcmI CCANNNNNNNNNTGG 3 cut(s) 1891, 2512, 3064
XhoI CTCGAG 1 cut(s) 2796
XmaJI CCTAGG 1 cut(s) 4073
XmiI GTMKAC 2 cut(s) 83, 267
XmnI GAANNNNTTC 2 cut(s) 3796, 4052
ZraI GACGTC 1 cut(s) 271
Zsp2I ATGCAT 4 cut(s) 445, 904, 3730, 3817
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.