RchiOBHm_Chr5g0055091

Pleiotropic drug resistance protein 2-like

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Forward (+)
57875263 .. 57882602
7340 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ33214

Sequence Viewer

Length: 4326 bp
ATGGCGGCTGCAATGGCCGGAGAAGACCTGATGAGGCAGTCGAGTAGCCGGAGGAGCTGGCGGTCGACGAGCGTGCGGGAAATGTGGAACGCGCCGGACGTGTTTCAGAGGAGCGGGAGGCAGCAGGCGGTGGATGAGGAGGAGGAGCTCAAGTGGGCCGCCATAGAGCGGTTGCCGACTTACGATAGGATGAGGAGGGGGATGTTGACTCAGGTGATGAGCAATGGTAGGATTATGCATGACACGGTTGATGTGGCCAATCTTGGGGCTCAGGATAAGAAGCAGTTGATGGAGAGCATACTCAAGGTTGTTGAGGACGATAACGAGAAGTTCTTGCAGAGACTCAGAGCCAGAAACGATAGGGTTGGTATTGAGGTTCCGAAAGTGGAGGTTCGATTCCAGAACTTAGAGATTGAGGGAGATGCATATGTCGGCACAAGAGCTCTTCCAACTCTACTCAACTCTACTTTGAACGCACTAGAGGCATTAATTGGATTGGTTGGACTCTCACCGTCGAAGAAAAGAGTTGTTAAGATACTCCAAGATGTGAGCGGAATTGTGAAACCATCAAGGGTTACACTTCTTCTTGGACCTCCTTCTTCAGGAAAAACAACACTGCTAAAAGCTCTTGCTGGCAAACTCGATAAAGATCTAAGGGTAAATGGGAGTGTTACCTACTGTGGCCATGAATTTAAGGAGTTTGTACCTCAGAGAACTTCCGCTTACATTAGTCAGCATGATCTTCATTATGGTGAGATGACAGTTCGTGAAACCATGGATTTCTCCGGACGTTGCCTGGGAGTTGGAACCAGGTATGATATGCTGGTAGAGTTGTCTAGAAGGGAGAAAGATTCAGGTATCAAACCTGATCCTGAAATCGATGCATTCATGAAAGCCACATCTATGTCGGGCCAGGAAACCAGTTTGATCACAGATTATGTTCTCAAGATACTTGGACTAGATATCTGTGCTGATATTATGGTGGGTGACGACATGAGAAGGGGTATCTCTGGAGGGCAAAAGAAGCGTGTAACTACTGGAGAAATGTTGGTTGGACCAGCAAAAGCATTTTTCATGGATGAAATATCAACAGGACTGGACAGTTCCACCACCTTTCAGATTGTCAAGTTTATGAGACAGATGGTTCATATCATGGATGTATCAATGGTCATCTCTCTCTTGCAGCCTGCACCTGAGACATATGAGCTTTTTGATGACATTATTCTTATTTCTGAGGGTCAAATTGTCTACCAAGGCCCACGTGAGAATGTTCTTGAGTTTTTTGAACATATGGGATTCAAATGCCCAGATAGAAAGGGTGTTGCTGACTTCTTGCAAGAAGTGACCTCAAAGAAGGATCAAGAACAGTACTGGTATAAGAAGAACCAACCTTACAGATATGTCTCTGTACCTGATTTCGTAAGGGCTTTCACCTCTTTCCATGTTGGTCAACGGCTTGTGGAGGAACTAAGAGTTCCTTATGATAAAAGAACTACACATCCTGCTGCTTTGGTGAAAGAAAGGTATGGAATATCCAACATGGAGCTCTTCAAGGCATGTATGTCAAGGGAATGGCTGCTGATGAAGCGTAACTCTTTTGTGTACATCTTCAAAACTACCCAGATCACAATCATGGCTACAATTGCTTTGACTGTATTCTTAAGAACGGAAATGAAAGCTGGGACAGTAGAAGATTCTGCCAAATTCTGGGGAGCTCTGTTTTTCAGTCTCATTAATGTCATGTTTAACGGAATGGCAGAGCTTGCAATGACAGGTTTCAGGCTTCCTGTCTACTTTAAACAAAGAGATGCCTTGTTCTACCCTGGCTGGGCTTTTGGCTTGCCAATTTGGCTAACCAGAATTCCAATTTCACTGTTGGAATCTGGCATATGGATCATTTTTACATACTACACCATCGGATTTGCTCCCGCAGCCAGTAGGTTCTTTAAACAGTTCTTGGCTTTCTTCGGTATACATCAGATGGCACTCTCCCTCTTCCGTTTCATTGCTGCTCTTGGGAGATCAGAGGTTGTTTCAGGCACAATTGGTTCCTTTACTTTGCTAATGGTGTTTGTCCTAGGAGGTTTCATTGTTGCTAAAGATGACATTGAATCATGGATGATATGGGGCTACTATGTTTCACCTATGATGTACGGACAGAATGCAATTGCTATCAATGAATTTCTGGACAAAAGATGGAGTGCTCCTCTCGTCAACGCAAGTCAACCCACAGTAGGAAAGCTACTTCTCAAGCAAAGAGGCCTCTATACTGAAGAGTATTGGTATTGGATTTGTGTTGGAGCGCTCTTCGCATTTTCTCTTCTGTTTAACGTTCTTTTCATCGCATGCTTGACCTTCTTAGATCCTCTCGGTGAAACTAAAACTTTGATTGAGAATGATGACGCTGAAAGCAACAGGAAGCGACGATCCAATCCTGAAGGTATTGACATGCAAGTGAGAAATGCACAAGGAGGTCAAGCCAAAAGAGGAATGGTCTTGCCTTTCCAGCCCCTTTCACTTGCTTTCAACCATGTGAATTACTATGTGGATATGCCTGCTGAAATGAAAAGCCAAGGGATTGAAGAGACCCGACTGCAACTACTGAGAGATATTAGTGGTGCATTTAGGCCAGGTGTTTTGACTGCATTAGTTGGTGTTAGTGGTGCTGGAAAGACCACCTTGATGGATGTCTTGGCTGGAAGAAAGACAGGGGGGTACATTGAAGGAAGTATTACCATCTCGGGTTATCCAAAGAACCAAGAGACATTTGCTCGGGTCAGCGGTTACTGTGAGCAGAATGACATTCATTCTCCATTTATTACTGTTTATGAATCTCTCTTATACTCTGCATGGCTGCGTCTTGCTAAAGATGTCAAGACGGAGACACGAAAGATGTTTGTTGATGAGGTTATGGACTTGGTCGAGCTTCATCCATTAAGGAATGCTTTAGTTGGACTTCCAGGAGTTGATGGACTTTCGACTGAGCAAAGGAAAAGGCTTACCATTGCTGTGGAATTGGTTGCAAATCCTTCTATCATCTTCATGGATGAGCCAACCTCAGGTCTTGATGCTAGAGCAGCTGCCATTGTTATGCGTACTGTAAGAAACACTGTGGATACAGGACGAACTGTTGTCTGCACAATTCATCAACCTAGCATTGACATTTTTGAAGCTTTTGATGAGCTTTTCTTAATGAAAAGAGGAGGACAAGTGACTTATGCTGGACCTCTAGGTCGCCAATCTCACAAGCTTGTTGAATATTTTGAGGCTATACCAGGGGTTACCAAGATCAAAGACGGTTATAATCCTGCTACCTGGATGTTAGAGGTCAGCTCTTCAGCAATGGAAGCTCAACTTGACATTGACTTCGCAGAAGTATATGCGAACTCTGATCTCTATAGGAGAACTCAGGAACTGATCAAGGAGCTAAGCACACCGGAGCCTGGCTCTAAGGATCTTTACTTCCCCACCCAATACTCACAAAGCTATCTGACTCAATGCAAGGCTTGCTTCTGGAAACAACACTGGTCATACTGGAGAAACTCACGATACAATGCCATTAGGTTTTTCATGACGATTTGCATTGGTGGATTATTTGGTGTTATCTTCTGGAGCAAGGGAGACCAGATCCACAAACAACAGGACTTGATTAATCTTTTGGGAGCTACCTATGCTGCTGTTCTTTTCCTTGGAGCTAGCAATGCTTCTGCTGTGCAATCCGTGGTTGCAGTTGAGAGAACAGTTTTCTACCGTGAAAGAGCAGCGGGAATGTATTCAGAGTTGCCTTACGCATTTGCTCAGGTGGCTATTGAGACAATTTATGTTGCAATCCAAACCTTTATATATTCCTGTATTCTGTATTCCATGATCGGGTACACTTGGAAGGTGGAGAAGTTTTTCTACTTCTACTACTTCATTTTCATGTGCTTTACCTACTTCTCAATGTATGGAATGATGGTGGTTGCCCTAACTCCTGGCCATCAAATTGCTGCAATTGTTATGTCTTTCTTCCTGAGTTTCTGGAACTTGTTCTCTGGTTTCCTCATCCCTAGACCGCTCATTCCCATCTGGTGGAGGTGGTACTACTGGGGTTCTCCAGTTGCTTGGACCATCTATGGTATCTTCGGATCTCAAGTTGGGGACATGACAGCTGAAATCGATATGCCGACTGGGGATAAAGTAGCAATTAACACATTCGTCAAGGCTTATTTAGGTTATGACTATGACTTCATGATCCCTGTTGTCATTGCTCATGTTGGTTGGGTCCTTCTCTTCTTCTTTGTCTTTGCCTATGGCATCAAGTTCCTCAACTTCCAAAGGAGATAA

Protein Analysis

1441

Amino Acids

163.7

Weight (kDa)

7.76

Isoelectric Point (pI)

39.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_trans_N PF14510 106 - 154 1.3e-08 ABC-transporter N-terminal
ABC_tran PF00005 180 - 361 1.1e-13 ABC transporter
ABC2_membrane_7 PF19055 395 - 448 6.8e-06 ABC-2 type transporter
ABC2_membrane PF01061 516 - 728 3.1e-44 ABC-2 type transporter
PDR_assoc PF08370 733 - 797 3.2e-24 Plant PDR ABC transporter associated
ABC_tran PF00005 868 - 1020 4.3e-20 ABC transporter
ABC2_membrane PF01061 1165 - 1377 3.3e-55 ABC-2 type transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000245)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66950 AT2G36380
fragaria_vesca FvH4_3g29700 FvH4_3g29700 FvH4_3g29700 FvH4_3g29700 FvH4_3g29710 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29760 FvH4_3g29781 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150
malus_domestica MD02G1254900.v1.1 MD03G1119400.v1.1 MD03G1136800.v1.1 MD03G1137000.v1.1 MD04G1187500.v1.1 MD08G1208900.v1.1 MD08G1209000.v1.1 MD11G1159000.v1.1 MD11G1159100.v1.1 MD11G1159200.v1.1 MD12G1020800.v1.1 MD12G1021000.v1.1 MD14G1017900.v1.1 MD14G1018100.v1.1
prunus_persica Prupe.2G084300_v2.0.a1 Prupe.2G084300_v2.0.a1 Prupe.6G121200_v2.0.a1 Prupe.6G121200_v2.0.a1 Prupe.6G121500_v2.0.a1 Prupe.6G121800_v2.0.a1 Prupe.6G121900_v2.0.a1 Prupe.6G122100_v2.0.a1 Prupe.7G115200_v2.0.a1 Prupe.7G115200_v2.0.a1
pyrus_communis pycom02g21460 pycom03g09270 pycom03g09290 pycom07g05130 pycom08g18050 pycom11g12950 pycom11g12960 pycom11g12970 pycom12g01950 pycom12g01980 pycom14g01620 pycom14g01710 pycom14g01720 pycom16g12190
rosa_chinensis RchiOBHm_Chr1g0340571 RchiOBHm_Chr2g0107751 RchiOBHm_Chr3g0472451 RchiOBHm_Chr5g0055051 RchiOBHm_Chr5g0055091 RchiOBHm_Chr5g0055111 RchiOBHm_Chr5g0055121 RchiOBHm_Chr5g0055131 RchiOBHm_Chr5g0062371 RchiOBHm_Chr6g0265121 RchiOBHm_Chr6g0275771 RchiOBHm_Chr7g0187231
rosa_laevigata RLG00000006319 RLG00000013820 RLG00000024078 RLG00000034960 RLG00000034963 RLG00000034965 RLG00000034966 RLG00000034968 RLG00000034970
rosa_multiflora Rmu_co8358859.1_g000001 Rmu_co8422375.1_g000001 Rmu_co8427767.1_g000001 Rmu_co8474941.1_g000001 Rmu_sc0000925.1_g000009 Rmu_sc0001694.1_g000015 Rmu_sc0001694.1_g000022 Rmu_sc0001694.1_g000024 Rmu_sc0001694.1_g000030 Rmu_sc0003993.1_g000001 Rmu_sc0010632.1_g000001 Rmu_sc0035175.1_g000001
rosa_roxburghii Rroxscaffold_1G00025230 Rroxscaffold_1G00025240 Rroxscaffold_1G00025300 Rroxscaffold_1G00025320 Rroxscaffold_1G00025330 Rroxscaffold_1G00025360 Rroxscaffold_1G00025440 Rroxscaffold_1G00033590 Rroxscaffold_6G00408900
rosa_rugosa Rorug03G0125500.1 Rorug03G0125600.1 Rorug05G0290600 Rorug05G0291100 Rorug05G0291200 Rorug05G0291300
rosa_samantha Rh1CG035400 Rh1CG243200 Rh2DG410600 Rh3AG177500 Rh3CG193800 Rh3CG200900 Rh3DG171700 Rh5AG043000 Rh5AG360500 Rh5AG360900 Rh5AG361000 Rh5AG361300 Rh5AG441100 Rh5CG393700 Rh5CG393900 Rh5CG394200 Rh5DG247300 Rh5DG385200 Rh5DG385500 Rh5DG385800 Rh6BG272200 Rh6DG204000 Rh7AG084700 Rh7AG178300
rosa_wichuraiana Rw0G022120 Rw3G016410 Rw5G033910 Rw5G033920 Rw5G033940 Rw5G033960 Rw5G033970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 3303
AasI GACNNNNNNGTC 1 cut(s) 3231
AccB7I CCANNNNNTGG 2 cut(s) 1707, 4071
AccBSI CCGCTC 4 cut(s) 114, 169, 552, 4057
AccI GTMKAC 4 cut(s) 65, 1248, 1791, 1972
AccII CGCG 1 cut(s) 92
AccIII TCCGGA 1 cut(s) 785
AclI AACGTT 1 cut(s) 2331
AclWI GGATC 9 cut(s) 863, 1365, 1901, 2357, 2421, 3462, 3622, 4135, 4228
AcoI YGGCCR 4 cut(s) 15, 255, 682, 3976
AcsI RAATTY 4 cut(s) 689, 1703, 1860, 2180
AcuI CTGAAG 4 cut(s) 585, 2292, 2457, 3321
AcvI CACGTG 1 cut(s) 1262
AfaI GTAC 9 cut(s) 705, 1370, 1410, 1604, 2153, 2717, 3097, 3875, 4082
AfeI AGCGCT 1 cut(s) 2304
AflII CTTAAG 1 cut(s) 1660
AflIII ACRYGT 1 cut(s) 99
AjiI CACGTC 1 cut(s) 100
AjuI GAANNNNNNNTTGG 2 cut(s) 1035, 1067
AloI GAACNNNNNNTCC 2 cut(s) 1483, 1515
Alw21I GWGCWC 5 cut(s) 150, 445, 1548, 1717, 2206
AlwI GGATC 9 cut(s) 863, 1365, 1901, 2357, 2421, 3462, 3622, 4135, 4228
AlwNI CAGNNNCTG 1 cut(s) 3415
Ama87I CYCGRG 2 cut(s) 2740, 2772
Aor13HI TCCGGA 1 cut(s) 785
Aor51HI AGCGCT 1 cut(s) 2304
AoxI GGCC 9 cut(s) 15, 156, 255, 682, 910, 1255, 2260, 2627, 3976
ApoI RAATTY 4 cut(s) 689, 1703, 1860, 2180
ArsI GACNNNNNNTTYG 2 cut(s) 3350, 3382
AseI ATTAAT 3 cut(s) 488, 1734, 3651
Asp700I GAANNNNTTC 3 cut(s) 3772, 3896, 4028
AspA2I CCTAGG 1 cut(s) 2077
AspLEI GCGC 2 cut(s) 94, 2305
AspS9I GGNCC 8 cut(s) 156, 590, 910, 1055, 1256, 3224, 4107, 4264
AsuHPI GGTGA 8 cut(s) 226, 501, 764, 998, 1423, 1525, 2133, 2384
AsuNHI GCTAGC 1 cut(s) 3695
AvaI CYCGRG 2 cut(s) 2740, 2772
AvaII GGWCC 5 cut(s) 590, 1055, 3224, 4107, 4264
AvrII CCTAGG 1 cut(s) 2077
AxyI CCTNAGG 1 cut(s) 3058
BalI TGGCCA 3 cut(s) 257, 684, 3978
BanII GRGCYC 5 cut(s) 150, 271, 445, 1548, 1717
BarI GAAGNNNNNNTAC 2 cut(s) 3884, 3916
BbrPI CACGTG 1 cut(s) 1262
BbsI GAAGAC 1 cut(s) 30
Bbv12I GWGCWC 5 cut(s) 150, 445, 1548, 1717, 2206
BceAI ACGGC 1 cut(s) 1469
BcgI CGANNNNNNTGC 2 cut(s) 55, 89
BciVI GTATCC 1 cut(s) 3109
BclI TGATCA 2 cut(s) 927, 3417
BfaI CTAG 9 cut(s) 479, 837, 959, 2078, 3072, 3153, 3230, 3696, 4050
BfmI CTRYAG 1 cut(s) 3397
BfoI RGCGCY 1 cut(s) 2306
BfrI CTTAAG 1 cut(s) 1660
BfuI GTATCC 1 cut(s) 3109
BglI GCCNNNNNGGC 1 cut(s) 1849
BglII AGATCT 1 cut(s) 649
BlnI CCTAGG 1 cut(s) 2077
BlpI GCTNAGC 1 cut(s) 3428
BmcAI AGTACT 1 cut(s) 1370
Bme18I GGWCC 5 cut(s) 590, 1055, 3224, 4107, 4264
BmeT110I CYCGRG 2 cut(s) 2740, 2772
BmgBI CACGTC 1 cut(s) 100
BmgT120I GGNCC 8 cut(s) 156, 590, 910, 1055, 1256, 3224, 4107, 4264
BmiI GGNNCC 5 cut(s) 378, 808, 2050, 3441, 4265
BmrI ACTGGG 2 cut(s) 4096, 4179
BmsI GCATC 5 cut(s) 412, 871, 1798, 3058, 4305
BmtI GCTAGC 1 cut(s) 3699
BmuI ACTGGG 2 cut(s) 4096, 4179
BpiI GAAGAC 1 cut(s) 30
BplI GAGNNNNNCTC 8 cut(s) 2191, 2223, 3041, 3073, 3317, 3349, 3431, 3463
BpmI CTGGAG 5 cut(s) 1032, 1059, 3556, 3631, 4080
Bpu10I CCTNAGC 2 cut(s) 270, 3798
Bpu1102I GCTNAGC 1 cut(s) 3428
BpuEI CTTGAG 6 cut(s) 134, 287, 929, 1295, 2234, 4116
Bsa29I ATCGAT 2 cut(s) 879, 4158
BsaAI YACGTR 1 cut(s) 1262
BsaBI GATNNNNATC 2 cut(s) 648, 1628
BsaI GGTCTC 2 cut(s) 2579, 3615
BsaJI CCNNGG 9 cut(s) 774, 796, 1252, 1822, 2077, 2572, 3275, 3688, 3720
BsaWI WCCGGW 2 cut(s) 785, 3436
BsaXI ACNNNNNCTCC 4 cut(s) 137, 167, 3195, 3225
Bse21I CCTNAGG 1 cut(s) 3058
Bse3DI GCAATG 8 cut(s) 18, 229, 1773, 2004, 3003, 3348, 3706, 4245
Bse8I GATNNNNATC 2 cut(s) 648, 1628
BseAI TCCGGA 1 cut(s) 785
BseCI ATCGAT 2 cut(s) 879, 4158
BseDI CCNNGG 9 cut(s) 774, 796, 1252, 1822, 2077, 2572, 3275, 3688, 3720
BseJI GATNNNNATC 2 cut(s) 648, 1628
BseMI GCAATG 8 cut(s) 18, 229, 1773, 2004, 3003, 3348, 3706, 4245
BseRI GAGGAG 8 cut(s) 67, 124, 152, 155, 158, 208, 2196, 3216
BseYI CCCAGC 2 cut(s) 1679, 1827
BsgI GTGCAG 2 cut(s) 1173, 3121
Bsh1236I CGCG 1 cut(s) 92
Bsh1285I CGRYCG 1 cut(s) 65
BshFI GGCC 9 cut(s) 17, 158, 257, 684, 912, 1257, 2262, 2629, 3978
BshVI ATCGAT 2 cut(s) 879, 4158
BsiEI CGRYCG 1 cut(s) 65
BsiHKAI GWGCWC 5 cut(s) 150, 445, 1548, 1717, 2206
BsiHKCI CYCGRG 2 cut(s) 2740, 2772
BsiSI CCGG 5 cut(s) 18, 49, 95, 786, 3437
BslFI GGGAC 2 cut(s) 1696, 4154
BsmFI GGGAC 2 cut(s) 1696, 4154
BsmI GAATGC 3 cut(s) 884, 2167, 2947
BsnI GGCC 9 cut(s) 17, 158, 257, 684, 912, 1257, 2262, 2629, 3978
Bso31I GGTCTC 2 cut(s) 2579, 3615
BsoBI CYCGRG 2 cut(s) 2740, 2772
Bsp1286I GDGCHC 6 cut(s) 150, 271, 445, 1548, 1717, 2206
Bsp13I TCCGGA 1 cut(s) 785
Bsp1407I TGTACA 1 cut(s) 1602
Bsp1720I GCTNAGC 1 cut(s) 3428
Bsp19I CCATGG 1 cut(s) 774
BspANI GGCC 9 cut(s) 17, 158, 257, 684, 912, 1257, 2262, 2629, 3978
BspDI ATCGAT 2 cut(s) 879, 4158
BspEI TCCGGA 1 cut(s) 785
BspFNI CGCG 1 cut(s) 92
BspHI TCATGA 3 cut(s) 888, 3570, 4230
BspLI GGNNCC 5 cut(s) 378, 808, 2050, 3441, 4265
BspOI GCTAGC 1 cut(s) 3699
BspPI GGATC 9 cut(s) 863, 1365, 1901, 2357, 2421, 3462, 3622, 4135, 4228
BspQI GCTCTTC 4 cut(s) 450, 1553, 2312, 3340
BspTI CTTAAG 1 cut(s) 1660
BspTNI GGTCTC 2 cut(s) 2579, 3615
BsrBI CCGCTC 4 cut(s) 114, 169, 552, 4057
BsrDI GCAATG 8 cut(s) 18, 229, 1773, 2004, 3003, 3348, 3706, 4245
BsrGI TGTACA 1 cut(s) 1602
BssECI CCNNGG 9 cut(s) 774, 796, 1252, 1822, 2077, 2572, 3275, 3688, 3720
BssNAI GTATAC 1 cut(s) 1973
BssT1I CCWWGG 5 cut(s) 774, 1252, 2077, 2572, 3688
Bst1107I GTATAC 1 cut(s) 1973
Bst6I CTCTTC 9 cut(s) 450, 1553, 2000, 2268, 2312, 2325, 2577, 3340, 4277
BstAFI CTTAAG 1 cut(s) 1660
BstAPI GCANNNNNTGC 2 cut(s) 1763, 3507
BstAUI TGTACA 1 cut(s) 1602
BstBAI YACGTR 1 cut(s) 1262
BstDSI CCRYGG 2 cut(s) 774, 3720
BstEII GGTNACC 1 cut(s) 3280
BstENI CCTNNNNNAGG 1 cut(s) 600
BstFNI CGCG 1 cut(s) 92
BstH2I RGCGCY 1 cut(s) 2306
BstHHI GCGC 2 cut(s) 94, 2305
BstMCI CGRYCG 1 cut(s) 65
BstNSI RCATGY 3 cut(s) 1560, 2349, 2452
BstPI GGTNACC 1 cut(s) 3280
BstSFI CTRYAG 1 cut(s) 3397
BstUI CGCG 1 cut(s) 92
BstV2I GAAGAC 1 cut(s) 30
BstX2I RGATCY 5 cut(s) 649, 2362, 3454, 3627, 4127
BstXI CCANNNNNNTGG 3 cut(s) 2683, 3010, 4104
BstYI RGATCY 5 cut(s) 649, 2362, 3454, 3627, 4127
BstZ17I GTATAC 1 cut(s) 1973
Bsu15I ATCGAT 2 cut(s) 879, 4158
Bsu36I CCTNAGG 1 cut(s) 3058
BsuI GTATCC 1 cut(s) 3109
BsuRI GGCC 9 cut(s) 17, 158, 257, 684, 912, 1257, 2262, 2629, 3978
BsuTUI ATCGAT 2 cut(s) 879, 4158
BtgI CCRYGG 2 cut(s) 774, 3720
BtgZI GCGATG 1 cut(s) 2326
BtrI CACGTC 1 cut(s) 100
BtsI GCAGTG 1 cut(s) 614
BtsIMutI CAGTG 4 cut(s) 614, 1871, 3108, 3523
CaiI CAGNNNCTG 1 cut(s) 3415
CciI TCATGA 3 cut(s) 888, 3570, 4230
CfoI GCGC 2 cut(s) 94, 2305
Cfr13I GGNCC 8 cut(s) 156, 590, 910, 1055, 1256, 3224, 4107, 4264
ClaI ATCGAT 2 cut(s) 879, 4158
CseI GACGC 2 cut(s) 2411, 2846
CsiI ACCWGGT 1 cut(s) 809
Csp6I GTAC 9 cut(s) 704, 1369, 1409, 1603, 2152, 2716, 3096, 3874, 4081
CviQI GTAC 9 cut(s) 704, 1369, 1409, 1603, 2152, 2716, 3096, 3874, 4081
DraI TTTAAA 2 cut(s) 1798, 1948
DrdI GACNNNNNNGTC 1 cut(s) 3231
DseDI GACNNNNNNGTC 1 cut(s) 3231
EaeI YGGCCR 4 cut(s) 15, 255, 682, 3976
Eam1104I CTCTTC 9 cut(s) 450, 1553, 2000, 2268, 2312, 2325, 2577, 3340, 4277
EarI CTCTTC 9 cut(s) 450, 1553, 2000, 2268, 2312, 2325, 2577, 3340, 4277
Ecl136II GAGCTC 4 cut(s) 148, 443, 1546, 1715
Eco130I CCWWGG 5 cut(s) 774, 1252, 2077, 2572, 3688
Eco147I AGGCCT 1 cut(s) 2262
Eco24I GRGCYC 5 cut(s) 150, 271, 445, 1548, 1717
Eco31I GGTCTC 2 cut(s) 2579, 3615
Eco32I GATATC 1 cut(s) 964
Eco47I GGWCC 5 cut(s) 590, 1055, 3224, 4107, 4264
Eco47III AGCGCT 1 cut(s) 2304
Eco53kI GAGCTC 4 cut(s) 148, 443, 1546, 1715
Eco57I CTGAAG 4 cut(s) 585, 2292, 2457, 3321
Eco72I CACGTG 1 cut(s) 1262
Eco81I CCTNAGG 1 cut(s) 3058
Eco88I CYCGRG 2 cut(s) 2740, 2772
Eco91I GGTNACC 1 cut(s) 3280
EcoICRI GAGCTC 4 cut(s) 148, 443, 1546, 1715
EcoNI CCTNNNNNAGG 1 cut(s) 600
EcoO109I RGGNCCY 1 cut(s) 4264
EcoO65I GGTNACC 1 cut(s) 3280
EcoRI GAATTC 1 cut(s) 1860
EcoRV GATATC 1 cut(s) 964
EcoT14I CCWWGG 5 cut(s) 774, 1252, 2077, 2572, 3688
EcoT22I ATGCAT 3 cut(s) 240, 427, 886
EcoT38I GRGCYC 5 cut(s) 150, 271, 445, 1548, 1717
ErhI CCWWGG 5 cut(s) 774, 1252, 2077, 2572, 3688
FaqI GGGAC 2 cut(s) 1696, 4154
FauI CCCGC 4 cut(s) 69, 107, 1936, 3757
FauNDI CATATG 4 cut(s) 427, 1201, 1290, 1889
FbaI TGATCA 2 cut(s) 927, 3417
FblI GTMKAC 4 cut(s) 65, 1248, 1791, 1972
FriOI GRGCYC 5 cut(s) 150, 271, 445, 1548, 1717
FspBI CTAG 9 cut(s) 479, 837, 959, 2078, 3072, 3153, 3230, 3696, 4050
GlaI GCGC 2 cut(s) 93, 2304
GsaI CCCAGC 2 cut(s) 1683, 1831
GsuI CTGGAG 5 cut(s) 1032, 1059, 3556, 3631, 4080
HaeII RGCGCY 1 cut(s) 2306
HaeIII GGCC 9 cut(s) 17, 158, 257, 684, 912, 1257, 2262, 2629, 3978
HapII CCGG 5 cut(s) 18, 49, 95, 786, 3437
HgaI GACGC 2 cut(s) 2411, 2846
HhaI GCGC 2 cut(s) 94, 2305
Hin6I GCGC 2 cut(s) 92, 2303
HinP1I GCGC 2 cut(s) 92, 2303
HincII GTYRAC 5 cut(s) 66, 207, 1451, 2215, 2225
HindII GTYRAC 5 cut(s) 66, 207, 1451, 2215, 2225
HindIII AAGCTT 2 cut(s) 3171, 3248
HpaII CCGG 5 cut(s) 18, 49, 95, 786, 3437
HphI GGTGA 8 cut(s) 226, 501, 764, 998, 1423, 1525, 2133, 2384
Hpy99I CGWCG 3 cut(s) 70, 517, 2427
HpyCH4IV ACGT 4 cut(s) 99, 790, 1261, 2331
HpySE526I ACGT 4 cut(s) 99, 790, 1261, 2331
HspAI GCGC 2 cut(s) 92, 2303
Kpn2I TCCGGA 1 cut(s) 785
Ksp22I TGATCA 2 cut(s) 927, 3417
LguI GCTCTTC 4 cut(s) 450, 1553, 2312, 3340
LweI GCATC 5 cut(s) 412, 871, 1798, 3058, 4305
MabI ACCWGGT 1 cut(s) 809
MaeI CTAG 9 cut(s) 479, 837, 959, 2078, 3072, 3153, 3230, 3696, 4050
MaeII ACGT 4 cut(s) 99, 790, 1261, 2331
MaeIII GTNAC 9 cut(s) 574, 670, 986, 1030, 1342, 1589, 2783, 3211, 3280
MbiI CCGCTC 4 cut(s) 114, 169, 552, 4057
MfeI CAATTG 4 cut(s) 1641, 2043, 2166, 3993
MflI RGATCY 5 cut(s) 649, 2362, 3454, 3627, 4127
MhlI GDGCHC 6 cut(s) 150, 271, 445, 1548, 1717, 2206
MlsI TGGCCA 3 cut(s) 257, 684, 3978
MluNI TGGCCA 3 cut(s) 257, 684, 3978
MlyI GAGTC 4 cut(s) 202, 336, 498, 3487
MmeI TCCRAC 8 cut(s) 473, 481, 784, 1033, 1560, 1857, 2278, 2932
Mox20I TGGCCA 3 cut(s) 257, 684, 3978
Mph1103I ATGCAT 3 cut(s) 240, 427, 886
MroI TCCGGA 1 cut(s) 785
MroXI GAANNNNTTC 3 cut(s) 3772, 3896, 4028
MscI TGGCCA 3 cut(s) 257, 684, 3978
MslI CAYNNNNRTG 9 cut(s) 750, 902, 1631, 2453, 2681, 3008, 3041, 3089, 3920
Msp20I TGGCCA 3 cut(s) 257, 684, 3978
MspA1I CMGCKG 4 cut(s) 2781, 3080, 3764, 4151
MspCI CTTAAG 1 cut(s) 1660
MspI CCGG 5 cut(s) 18, 49, 95, 786, 3437
MunI CAATTG 4 cut(s) 1641, 2043, 2166, 3993
Mva1269I GAATGC 3 cut(s) 884, 2167, 2947
MvnI CGCG 1 cut(s) 92
NcoI CCATGG 1 cut(s) 774
NdeI CATATG 4 cut(s) 427, 1201, 1290, 1889
NheI GCTAGC 1 cut(s) 3695
NlaIV GGNNCC 5 cut(s) 378, 808, 2050, 3441, 4265
NmuCI GTSAC 3 cut(s) 986, 1342, 3211
NsiI ATGCAT 3 cut(s) 240, 427, 886
NspI RCATGY 3 cut(s) 1560, 2349, 2452
PaeI GCATGC 1 cut(s) 2349
PagI TCATGA 3 cut(s) 888, 3570, 4230
PceI AGGCCT 1 cut(s) 2262
PciSI GCTCTTC 4 cut(s) 450, 1553, 2312, 3340
PcsI WCGNNNNNNNCGW 1 cut(s) 96
PctI GAATGC 3 cut(s) 884, 2167, 2947
PdmI GAANNNNTTC 3 cut(s) 3772, 3896, 4028
PfeI GAWTC 7 cut(s) 396, 851, 1296, 1694, 1880, 2111, 2831
PflFI GACNNNGTC 1 cut(s) 2918
PflMI CCANNNNNTGG 2 cut(s) 1707, 4071
PfoI TCCNGGA 1 cut(s) 2959
PleI GAGTC 4 cut(s) 202, 336, 498, 3487
PmaCI CACGTG 1 cut(s) 1262
PmlI CACGTG 1 cut(s) 1262
PpsI GAGTC 4 cut(s) 202, 336, 498, 3487
Ppu21I YACGTR 1 cut(s) 1262
PpuMI RGGWCCY 1 cut(s) 4264
PshBI ATTAAT 3 cut(s) 488, 1734, 3651
PsiI TTATAA 1 cut(s) 3303
Psp124BI GAGCTC 4 cut(s) 150, 445, 1548, 1717
Psp1406I AACGTT 1 cut(s) 2331
Psp5II RGGWCCY 1 cut(s) 4264
PspCI CACGTG 1 cut(s) 1262
PspEI GGTNACC 1 cut(s) 3280
PspFI CCCAGC 2 cut(s) 1679, 1827
PspN4I GGNNCC 5 cut(s) 378, 808, 2050, 3441, 4265
PspPI GGNCC 8 cut(s) 156, 590, 910, 1055, 1256, 3224, 4107, 4264
PspPPI RGGWCCY 1 cut(s) 4264
PsrI GAACNNNNNNTAC 2 cut(s) 1376, 1408
PstNI CAGNNNCTG 1 cut(s) 3415
PsuI RGATCY 5 cut(s) 649, 2362, 3454, 3627, 4127
PsyI GACNNNGTC 1 cut(s) 2918
PvuII CAGCTG 2 cut(s) 3080, 4151
RsaI GTAC 9 cut(s) 705, 1370, 1410, 1604, 2153, 2717, 3097, 3875, 4082
RsaNI GTAC 9 cut(s) 704, 1369, 1409, 1603, 2152, 2716, 3096, 3874, 4081
RseI CAYNNNNRTG 9 cut(s) 750, 902, 1631, 2453, 2681, 3008, 3041, 3089, 3920
SacI GAGCTC 4 cut(s) 150, 445, 1548, 1717
SalI GTCGAC 1 cut(s) 64
SapI GCTCTTC 4 cut(s) 450, 1553, 2312, 3340
Sau96I GGNCC 8 cut(s) 156, 590, 910, 1055, 1256, 3224, 4107, 4264
ScaI AGTACT 1 cut(s) 1370
SchI GAGTC 4 cut(s) 202, 336, 498, 3487
SduI GDGCHC 6 cut(s) 150, 271, 445, 1548, 1717, 2206
SexAI ACCWGGT 1 cut(s) 809
SfaNI GCATC 5 cut(s) 412, 871, 1798, 3058, 4305
SfcI CTRYAG 1 cut(s) 3397
SinI GGWCC 5 cut(s) 590, 1055, 3224, 4107, 4264
SmiMI CAYNNNNRTG 9 cut(s) 750, 902, 1631, 2453, 2681, 3008, 3041, 3089, 3920
SmlI CTYRAG 7 cut(s) 149, 302, 944, 1274, 1660, 2249, 4131
SmoI CTYRAG 7 cut(s) 149, 302, 944, 1274, 1660, 2249, 4131
SphI GCATGC 1 cut(s) 2349
SseBI AGGCCT 1 cut(s) 2262
SspI AATATT 1 cut(s) 3260
SspMI CTAG 9 cut(s) 479, 837, 959, 2078, 3072, 3153, 3230, 3696, 4050
SstI GAGCTC 4 cut(s) 150, 445, 1548, 1717
StuI AGGCCT 1 cut(s) 2262
StyI CCWWGG 5 cut(s) 774, 1252, 2077, 2572, 3688
TaiI ACGT 4 cut(s) 102, 793, 1264, 2334
TaqI TCGA 9 cut(s) 41, 65, 394, 515, 642, 879, 2922, 2978, 4158
TatI WGTACW 2 cut(s) 1368, 1602
TauI GCSGC 2 cut(s) 8, 161
TfiI GAWTC 7 cut(s) 396, 851, 1296, 1694, 1880, 2111, 2831
TscAI CASTG 4 cut(s) 621, 1878, 3115, 3530
TseFI GTSAC 3 cut(s) 986, 1342, 3211
Tsp45I GTSAC 3 cut(s) 986, 1342, 3211
TspGWI ACGGA 6 cut(s) 1682, 1764, 1988, 2169, 2894, 3709
TspRI CASTG 4 cut(s) 621, 1878, 3115, 3530
Tth111I GACNNNGTC 1 cut(s) 2918
Van91I CCANNNNNTGG 2 cut(s) 1707, 4071
Vha464I CTTAAG 1 cut(s) 1660
VpaK11BI GGWCC 5 cut(s) 590, 1055, 3224, 4107, 4264
VspI ATTAAT 3 cut(s) 488, 1734, 3651
XagI CCTNNNNNAGG 1 cut(s) 600
XapI RAATTY 4 cut(s) 689, 1703, 1860, 2180
XbaI TCTAGA 1 cut(s) 836
XceI RCATGY 3 cut(s) 1560, 2349, 2452
XcmI CCANNNNNNNNNTGG 1 cut(s) 2488
XmaJI CCTAGG 1 cut(s) 2077
XmiI GTMKAC 4 cut(s) 65, 1248, 1791, 1972
XmnI GAANNNNTTC 3 cut(s) 3772, 3896, 4028
XspI CTAG 9 cut(s) 479, 837, 959, 2078, 3072, 3153, 3230, 3696, 4050
ZrmI AGTACT 1 cut(s) 1370
Zsp2I ATGCAT 3 cut(s) 240, 427, 886
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.