Rh3CG200900
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0000245
Physical Location & Seq
Reverse (-)
18093464 .. 18100025
6562 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG200900.1

Sequence Viewer

Length: 4449 bp
ATGGCGTTGGCTTTGGCCGGAGACGATCTGGCCCGGTCGACGAGCAGCCGGAGAAGCTTTGGTTCACATGGGAGCAAGCGGAGCTGGGCGTCCACAAGTTTCCGGGAGGTGTGGCAGGTCCCGCCGGACGTGTTCAACCGGAGTGGCCGGCAGGACGAGGATGAAGAGCTCCGGTGGGCCGCTATCGAGCGGCTTCCGACTTACGACAGACTTAGAAGAGGGATGCTCCGGCAGGTACTCGACAATGGACGAGTGGTTACTGATGAAGTGGATGTTACGAGGCTTGGAGTGCAAGACAAGAAGGTGTTGATGGAGAACATACTCAAAGTTGTGGAAGATGATAATGAAAAGTTTCTAAGGAGACTTAGAGACAGAACTGACAGAGTTGGGATTGAGATTCCGAAGATTGAAGTTAGATATGAGCATCTGTCGATTGAAGGAGATGTGTATGTTGGGAAAAGAGCACTGCCTACTCTGCTTAATGCTACCTTGAACACTATAGAGAGTGTTCTGGGTTTGATTCGTCTTGCTCCATCAAAGAAGAGAAAGATCCAGATACTTAAAGATGTTAATGGAATAGTCAAACCTTCTAGGATGACCCTACTTTTGGGTCCTCCAGGTGCAGGTAAAACAACATTGCTGTTGGCACTTGCTGGGAAGCTTGATGACGATCTAAGGGTATCTGGGAACATCACTTACTGTGGTCATGAATTGAGAGAGTTTGTTCCCCGAAGGACATGTGCTTATATCAGTCAACATGATCTTCACTATGGAGAAATGACAGTGAGGGAGACATTGGATTTTTCGGGACGATGCTTAGGTGTGGGGACTAGATATGAAATGCTGGCTGAACTTTCCAGAAGAGAAAAAGAAGCAGGAATCAAGCCGGATCCTGAGATTGATGCATTCATGAAAGCCACCTCAGTTTCAGGCCTGAAGACTAGTTTGGTCACAGATTATGTTATCAAGATTCTTGGTTTGGATATCTGTTCTGATATTATGGTTGGTGATGAAATGAGAAGGGGTATTTCTGGTGGCCAGAAAAAGCGTGTCACAACTGGGGAAATGTTGGTTGGACCAGCAAAGGTGCTTTTAATGGATGAAATTTCAACAGGGTTAGACAGTTCCACAACTTTTCAGATATGCAGGTACATGAGGCAAATGGTACATATAATGGATGTCACAATGGTCATCTCTCTTCTTCAACCAGCACCAGAGACATTTGAGCTGTTTGATGACCTTATCTTACTTTCAGAAGGTCAGATTGTGTACCACGGTCCGCGTGAGAGTGTTCTCGAGTTCTTTGAATACATGGGTTTCAAATGCCCGGAGAGGAAAGGAGTTGCTGACTTTTTGCAAGAAGTAACATCTAAGAAGGATCAAGAACAATACTGGTTCAAGAAAACCGAACCTTACAGATACATTGAAGTTGCTGAGTTTGTTGAGTGCTTCAACAATTTCCAATATGGCCAACAGATTGCATCAGAACTTGGGGTTCCTTATGAAAAGTCAAGAGCTCACCCAGCTGCATTAGTCAAAGAGAAATATGGTATTTCAAATTGGGAACTGTTCAAGGCTTGTTTTGCAAGGGAGTGGCTGCTAATGAAGCGCAATTCTTTTGTGTATGTATTCAAGACAACCCAGATAACAATTATGTCAGTAATTGCGTTCACAGTGTTCCTTAGGACTCAAATGCCAGTGGGAACTGTACAAGATGGAGGAAAATTTTTCGGAGCACTGTTTTTCAGTCTGATTAATGTCATGTTCAATGGAATGGCAGAACTGGCAATGACTGTTTTCAGGCTTCCTGTGTTTTATAAACAGAGGGATTTCTTGTTTTATCCTGCTTGGGCTTTTGGTTTTCCCATTTGGGTCCTTAGGATCCCCCTATCTTTAATGGAGTCGGCAATATGGATTGTTCTTACTTATTACACCATTGGATTTGCTCCAGCTGCTAGCAGATTTTTCAGACAGTTTTTGGCTTTTTTTGGCATTCATCAAATGGCACTGTCCCTCTTTCGGTTCATTGCTGCTCTTGGAAGAACACAAACGGTTGCAAATACTCTCGGTACCTTCACCTTGCTTATGGTGTTTGTTCTGGGAGGATTTATTGTTGCCAAAAATGACATTGAGCCTTGGATGATATGGGGCTACTATATATCTCCTATGATGTATGGACAGAATGCAATTGTCATGAACGAATTCCTCGATAAAAGATGGAGCGCGCGAAATACAGATCCAAGAATTAATGAACCTACAGTTGGGAAAGTCCTCCTTAAGTCCAGAGGATTCTTCACAGATGAATATTGGTTCTGGATATGTATTGGAGCACTATTTGGATTTTCTCTTCTCTTTAACATCTTATTCATTGCTGCATTGACTTTTCTGAATCGTAAGTTCAACTCGTTTTCAAGTTTTTTCTTTTTCATTAGTGAATGTGAAATTCTAGAGTTGACGAACCGTCTTTCTTGTATTGGATTATCAACACCAGCTCTTGGAGATTCGAAGGCTGTCATAGCTGATGAAAAAAGTGAGAAAAAGAAAAGGAAGTCATCAACTGAAGGTATTGATATGGCATTGAGGAGTTCTTCAGAGCATGCACCAACGAAAGGAATGGTTTTGCCCTTCCAACCCCTGTCACTCGCATTTAACCATGTGAACTACTATGTCGATATGCCAGCTGAAATGAAGAGTCAAGGAGTTGATCAAGATCGCCTTCAGCTCCTAAGAGATGTCAGTGGTGCTTTTAGACCAGGAGTATTGACAGCACTTGTAGGTGTTAGTGGTGCTGGAAAAACAACTCTTATGGATGTCTTGGCAGGAAGAAAGACAGGTGGTTATATTGAAGGAAGTATTAACATCTCCGGTTATCCAAAGAAACAAGACACATTTGCTCGTGTTAGTGGTTATTGTGAGCAGAATGACATCCATTCACCACATGTTACTGTATACGAATCTCTTCTGTATTCAGCCTGGCTCCGTCTTTCTTCAAATGTAAAGACCCGAACAAGAAAGATGTTTGTTGAGGAAGTCATGGAGTTGGTTGAGCTTAATCCCATTAGAGATGCTCTAGTTGGCCTTCCGGGAATAGATGGTCTTTCAACGGAACAAAGGAAGAGACTAACCATAGCCGTGGAGCTGGTAGCCAACCCCTCTATTATTTTCATGGATGAACCAACATCTGGACTTGATGCCAGGGCTGCTGCCATCGTTATGCGTACTGTGAGAAACACAGTGGACACTGGAAGAACTGTCGTCTGCACGATTCATCAGCCAAGCATAGATATTTTTGAAGCTTTTGATGAGCTGCTTCTGATGAAACGAGGAGGGCAAGTTATATATGCTGGACCTCTAGGTCGCCAATCTCACAAACTTGTAGAATATTTTGAAGCTGTTCCTGGGGTCACTAAGATTAAGGATGGTTACAATCCTGCTACATGGATGCTTGAGGTTACTGCTCCTTCAGTTGAGGCTCAACTGGATGTGGACTTTGCAGACATTTATGCCAATTCCTCACTTTACCAGAGGAATCAAGAGCTTATCGAAGAGCTTAGTACTCCGGTGCCAGGGTCCAAGGATCTCTACTTCCCAACCAAATACTCCCAACCATTCCCTGTTCAATGCAAAGCTTGTTTCTGGAAAATGCATTGGTCTTATTGGAGAAACCCCCAGTACAACGCCATCCGGTTCTTCATGACAATAGTCATTGGTGTTTTATTTGGTCTTATCTTCTGGAACAAGGGACAACAGACAACCCAACAACAAGATCTGATGAACCTTTTGGGAGCCATGTATGCTGCTGTGCTTTTCCTTGGAGCTACAAATGCTTCTGCGGTGCAAGCAGTTGTTGCCATTGAAAGAACAGTTTTCTATCGTGAAAGAGCGGCTGGGATGTATTCTGAACTGCCTTATGCATTTGCTCAGGTGGCCATAGAGACAATCTATGTTGCAATTCAAACTTTTATCTACACTCTTATCCTCTACTCTATGATTGGATTTGAGTGGAAGATAGCTAAATTCCTCTGGTTCTACTACTACATACTGATGTGCTTCATCTACTTCACAATGTATGGGATGATGGTTGTTGCACTCACTCCAGGCCACCAGATTGCTGCAATTGTTATGTCCTTTTTCCTCAGTTTCTGGAATTTGTTTTCCGGGTTTCTCATTCCAAGACCGCAAATCCCAATATGGTGGAGGTGGTACTACTGGGCTTCACCTGTGGCTTGGACGCTATATGGCCTTGTGACCTCTCAAGTGGGTGACAAGGATGCTGATCTTGTGCTACCTGGATATGGCACTATGAAATTGAAGACGTTCCTTAAGGATCAGCTGGGTTTTGATTATGATTTCCTTCCGGCTGTCGCAGCTGCCCATGTTGGCTGGGTCCTCCTTTTCTTCTTTGTGTTTGCATATGGAATCAAGTTCCTCAACTTTCAGAGGAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

1482

Amino Acids

168.58

Weight (kDa)

8.51

Isoelectric Point (pI)

41.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_trans_N PF14510 113 - 162 8.7e-09 ABC-transporter N-terminal
ABC_tran PF00005 187 - 369 1.2e-16 ABC transporter
ABC2_membrane_7 PF19055 402 - 454 7.4e-07 ABC-2 type transporter
ABC2_membrane PF01061 523 - 735 1e-46 ABC-2 type transporter
PDR_assoc PF08370 741 - 798 2.3e-23 Plant PDR ABC transporter associated
ABC_tran PF00005 909 - 1061 5.5e-21 ABC transporter
ABC2_membrane PF01061 1207 - 1419 5.9e-58 ABC-2 type transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000245)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66950 AT2G36380
fragaria_vesca FvH4_3g29700 FvH4_3g29700 FvH4_3g29700 FvH4_3g29700 FvH4_3g29710 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29760 FvH4_3g29781 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150
malus_domestica MD02G1254900.v1.1 MD03G1119400.v1.1 MD03G1136800.v1.1 MD03G1137000.v1.1 MD04G1187500.v1.1 MD08G1208900.v1.1 MD08G1209000.v1.1 MD11G1159000.v1.1 MD11G1159100.v1.1 MD11G1159200.v1.1 MD12G1020800.v1.1 MD12G1021000.v1.1 MD14G1017900.v1.1 MD14G1018100.v1.1
prunus_persica Prupe.2G084300_v2.0.a1 Prupe.2G084300_v2.0.a1 Prupe.6G121200_v2.0.a1 Prupe.6G121200_v2.0.a1 Prupe.6G121500_v2.0.a1 Prupe.6G121800_v2.0.a1 Prupe.6G121900_v2.0.a1 Prupe.6G122100_v2.0.a1 Prupe.7G115200_v2.0.a1 Prupe.7G115200_v2.0.a1
pyrus_communis pycom02g21460 pycom03g09270 pycom03g09290 pycom07g05130 pycom08g18050 pycom11g12950 pycom11g12960 pycom11g12970 pycom12g01950 pycom12g01980 pycom14g01620 pycom14g01710 pycom14g01720 pycom16g12190
rosa_chinensis RchiOBHm_Chr1g0340571 RchiOBHm_Chr2g0107751 RchiOBHm_Chr3g0472451 RchiOBHm_Chr5g0055051 RchiOBHm_Chr5g0055091 RchiOBHm_Chr5g0055111 RchiOBHm_Chr5g0055121 RchiOBHm_Chr5g0055131 RchiOBHm_Chr5g0062371 RchiOBHm_Chr6g0265121 RchiOBHm_Chr6g0275771 RchiOBHm_Chr7g0187231
rosa_laevigata RLG00000006319 RLG00000013820 RLG00000024078 RLG00000034960 RLG00000034963 RLG00000034965 RLG00000034966 RLG00000034968 RLG00000034970
rosa_multiflora Rmu_co8358859.1_g000001 Rmu_co8422375.1_g000001 Rmu_co8427767.1_g000001 Rmu_co8474941.1_g000001 Rmu_sc0000925.1_g000009 Rmu_sc0001694.1_g000015 Rmu_sc0001694.1_g000022 Rmu_sc0001694.1_g000024 Rmu_sc0001694.1_g000030 Rmu_sc0003993.1_g000001 Rmu_sc0010632.1_g000001 Rmu_sc0035175.1_g000001
rosa_roxburghii Rroxscaffold_1G00025230 Rroxscaffold_1G00025240 Rroxscaffold_1G00025300 Rroxscaffold_1G00025320 Rroxscaffold_1G00025330 Rroxscaffold_1G00025360 Rroxscaffold_1G00025440 Rroxscaffold_1G00033590 Rroxscaffold_6G00408900
rosa_rugosa Rorug03G0125500.1 Rorug03G0125600.1 Rorug05G0290600 Rorug05G0291100 Rorug05G0291200 Rorug05G0291300
rosa_samantha Rh1CG035400 Rh1CG243200 Rh2DG410600 Rh3AG177500 Rh3CG193800 Rh3CG200900 Rh3DG171700 Rh5AG043000 Rh5AG360500 Rh5AG360900 Rh5AG361000 Rh5AG361300 Rh5AG441100 Rh5CG393700 Rh5CG393900 Rh5CG394200 Rh5DG247300 Rh5DG385200 Rh5DG385500 Rh5DG385800 Rh6BG272200 Rh6DG204000 Rh7AG084700 Rh7AG178300
rosa_wichuraiana Rw0G022120 Rw3G016410 Rw5G033910 Rw5G033920 Rw5G033940 Rw5G033960 Rw5G033970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1818
AasI GACNNNNNNGTC 1 cut(s) 3354
Acc36I ACCTGC 4 cut(s) 106, 223, 614, 1137
Acc65I GGTACC 1 cut(s) 2069
AccB1I GGYRCC 2 cut(s) 2069, 3562
AccB7I CCANNNNNTGG 2 cut(s) 2495, 3182
AccBSI CCGCTC 2 cut(s) 190, 3884
AccI GTMKAC 2 cut(s) 38, 2949
AccII CGCG 3 cut(s) 1282, 2225, 2227
AciI CCGC 8 cut(s) 79, 122, 180, 190, 1280, 3833, 3884, 4178
AclWI GGATC 9 cut(s) 544, 884, 897, 1386, 1876, 1889, 2231, 3585, 4335
AcoI YGGCCR 5 cut(s) 15, 145, 1036, 1468, 3927
AcsI RAATTY 6 cut(s) 1104, 1724, 2201, 2442, 4016, 4147
AcuI CTGAAG 5 cut(s) 956, 2574, 2580, 2702, 3447
AcyI GRCGYC 1 cut(s) 89
AfiI CCNNNNNNNGG 9 cut(s) 607, 623, 2019, 2261, 2495, 2609, 3182, 3566, 4295
AflII CTTAAG 2 cut(s) 2276, 4322
AflIII ACRYGT 3 cut(s) 129, 737, 2938
AhdI GACNNNNNGTC 1 cut(s) 2460
AhlI ACTAGT 1 cut(s) 941
AjiI CACGTC 1 cut(s) 130
AjnI CCWGG 8 cut(s) 616, 2752, 2972, 3194, 3397, 3565, 4096, 4288
AjuI GAANNNNNNNTTGG 6 cut(s) 929, 961, 1056, 1088, 2244, 2276
Alw21I GWGCWC 5 cut(s) 171, 466, 1519, 1738, 2332
Alw26I GTCTC 7 cut(s) 15, 355, 363, 785, 1211, 3112, 3929
AlwI GGATC 9 cut(s) 544, 884, 897, 1386, 1876, 1889, 2231, 3585, 4335
AlwNI CAGNNNCTG 1 cut(s) 4143
Ama87I CYCGRG 1 cut(s) 1295
ApoI RAATTY 6 cut(s) 1104, 1724, 2201, 2442, 4016, 4147
ArsI GACNNNNNNTTYG 2 cut(s) 589, 621
AseI ATTAAT 2 cut(s) 1755, 2247
Asp700I GAANNNNTTC 5 cut(s) 351, 2201, 2958, 3393, 4316
Asp718I GGTACC 1 cut(s) 2069
AspLEI GCGC 3 cut(s) 1611, 2225, 2227
AsuC2I CCSGG 5 cut(s) 34, 104, 1328, 3084, 4159
AsuHPI GGTGA 6 cut(s) 1019, 1511, 2068, 2925, 4209, 4274
AsuII TTCGAA 1 cut(s) 2504
AsuNHI GCTAGC 1 cut(s) 1955
AvaI CYCGRG 1 cut(s) 1295
AvaII GGWCC 8 cut(s) 118, 611, 1076, 1277, 1873, 3347, 3570, 4387
AxyI CCTNAGG 2 cut(s) 1682, 1877
BalI TGGCCA 3 cut(s) 1038, 1470, 3929
BamHI GGATCC 2 cut(s) 889, 1881
BanI GGYRCC 2 cut(s) 2069, 3562
BanII GRGCYC 2 cut(s) 171, 1519
BauI CACGAG 1 cut(s) 2895
BbsI GAAGAC 2 cut(s) 944, 4319
Bbv12I GWGCWC 5 cut(s) 171, 466, 1519, 1738, 2332
BccI CCATC 9 cut(s) 304, 541, 1709, 2211, 3086, 3215, 3413, 3689, 4072
BceAI ACGGC 1 cut(s) 3116
BciT130I CCWGG 8 cut(s) 618, 2754, 2974, 3196, 3399, 3567, 4098, 4290
BclI TGATCA 1 cut(s) 2704
BcnI CCSGG 5 cut(s) 34, 104, 1328, 3084, 4159
BcoDI GTCTC 7 cut(s) 15, 355, 363, 785, 1211, 3112, 3929
BcuI ACTAGT 1 cut(s) 941
BfaI CTAG 7 cut(s) 591, 831, 942, 1956, 2447, 3071, 3353
BfmI CTRYAG 2 cut(s) 498, 2256
BfrI CTTAAG 2 cut(s) 2276, 4322
BfuAI ACCTGC 4 cut(s) 106, 223, 614, 1137
BglII AGATCT 1 cut(s) 3766
BmcAI AGTACT 1 cut(s) 3556
Bme18I GGWCC 8 cut(s) 118, 611, 1076, 1277, 1873, 3347, 3570, 4387
BmeRI GACNNNNNGTC 1 cut(s) 2460
BmeT110I CYCGRG 1 cut(s) 1295
BmgBI CACGTC 1 cut(s) 130
BmrI ACTGGG 3 cut(s) 1068, 3664, 4219
BmsI GCATC 9 cut(s) 213, 433, 803, 892, 1490, 3055, 3181, 3432, 4261
BmtI GCTAGC 1 cut(s) 1959
BmuI ACTGGG 3 cut(s) 1068, 3664, 4219
BoxI GACNNNNGTC 1 cut(s) 3701
BpiI GAAGAC 2 cut(s) 944, 4319
BplI GAGNNNNNCTC 2 cut(s) 210, 242
BpmI CTGGAG 3 cut(s) 600, 1932, 4080
Bpu10I CCTNAGC 2 cut(s) 817, 3921
Bpu14I TTCGAA 1 cut(s) 2504
BpuEI CTTGAG 2 cut(s) 3467, 4239
BpuMI CCSGG 5 cut(s) 34, 104, 1328, 3084, 4159
BsaBI GATNNNNATC 3 cut(s) 669, 2709, 4275
BsaHI GRCGYC 1 cut(s) 89
BsaJI CCNNGG 8 cut(s) 1273, 2135, 3132, 3195, 3398, 3566, 3573, 3811
BsaWI WCCGGW 5 cut(s) 138, 171, 2864, 3559, 3684
BsaXI ACNNNNNCTCC 2 cut(s) 3318, 3348
Bsc4I CCNNNNNNNGG 9 cut(s) 607, 623, 2019, 2261, 2495, 2609, 3182, 3566, 4295
Bse118I RCCGGY 1 cut(s) 147
Bse1I ACTGG 8 cut(s) 1063, 1397, 1697, 1788, 3247, 3483, 3670, 4214
Bse21I CCTNAGG 2 cut(s) 1682, 1877
Bse3DI GCAATG 4 cut(s) 635, 1794, 2025, 2367
Bse8I GATNNNNATC 3 cut(s) 669, 2709, 4275
BseBI CCWGG 8 cut(s) 618, 2754, 2974, 3196, 3399, 3567, 4098, 4290
BseDI CCNNGG 8 cut(s) 1273, 2135, 3132, 3195, 3398, 3566, 3573, 3811
BseJI GATNNNNATC 3 cut(s) 669, 2709, 4275
BseLI CCNNNNNNNGG 9 cut(s) 607, 623, 2019, 2261, 2495, 2609, 3182, 3566, 4295
BseMI GCAATG 4 cut(s) 635, 1794, 2025, 2367
BseMII CTCAG 5 cut(s) 885, 936, 1425, 3935, 4150
BseNI ACTGG 8 cut(s) 1063, 1397, 1697, 1788, 3247, 3483, 3670, 4214
BsePI GCGCGC 1 cut(s) 2223
BseRI GAGGAG 2 cut(s) 2596, 3339
BseYI CCCAGC 6 cut(s) 84, 653, 1522, 3887, 4333, 4383
BsgI GTGCAG 2 cut(s) 642, 3244
Bsh1236I CGCG 3 cut(s) 1282, 2225, 2227
Bsh1285I CGRYCG 1 cut(s) 38
BshNI GGYRCC 2 cut(s) 2069, 3562
BsiEI CGRYCG 1 cut(s) 38
BsiHKAI GWGCWC 5 cut(s) 171, 466, 1519, 1738, 2332
BsiHKCI CYCGRG 1 cut(s) 1295
BslFI GGGAC 5 cut(s) 104, 822, 841, 1996, 3756
BslI CCNNNNNNNGG 9 cut(s) 607, 623, 2019, 2261, 2495, 2609, 3182, 3566, 4295
BsmAI GTCTC 7 cut(s) 15, 355, 363, 785, 1211, 3112, 3929
BsmBI CGTCTC 1 cut(s) 15
BsmFI GGGAC 5 cut(s) 104, 822, 841, 1996, 3756
BsmI GAATGC 3 cut(s) 905, 1992, 2188
BsoBI CYCGRG 1 cut(s) 1295
Bsp119I TTCGAA 1 cut(s) 2504
Bsp1286I GDGCHC 5 cut(s) 171, 466, 1519, 1738, 2332
Bsp1407I TGTACA 1 cut(s) 1708
BspACI CCGC 8 cut(s) 79, 122, 180, 190, 1280, 3833, 3884, 4178
BspCNI CTCAG 5 cut(s) 886, 935, 1426, 3934, 4149
BspFNI CGCG 3 cut(s) 1282, 2225, 2227
BspHI TCATGA 4 cut(s) 706, 909, 2193, 3693
BspMI ACCTGC 4 cut(s) 106, 223, 614, 1137
BspOI GCTAGC 1 cut(s) 1959
BspPI GGATC 9 cut(s) 544, 884, 897, 1386, 1876, 1889, 2231, 3585, 4335
BspQI GCTCTTC 2 cut(s) 159, 3540
BspT104I TTCGAA 1 cut(s) 2504
BspT107I GGYRCC 2 cut(s) 2069, 3562
BspTI CTTAAG 2 cut(s) 2276, 4322
BsrBI CCGCTC 2 cut(s) 190, 3884
BsrDI GCAATG 4 cut(s) 635, 1794, 2025, 2367
BsrFI RCCGGY 1 cut(s) 147
BsrGI TGTACA 1 cut(s) 1708
BsrI ACTGG 8 cut(s) 1063, 1397, 1697, 1788, 3247, 3483, 3670, 4214
BssAI RCCGGY 1 cut(s) 147
BssECI CCNNGG 8 cut(s) 1273, 2135, 3132, 3195, 3398, 3566, 3573, 3811
BssHII GCGCGC 1 cut(s) 2223
BssNAI GTATAC 1 cut(s) 2950
BssNI GRCGYC 1 cut(s) 89
BssSI CACGAG 1 cut(s) 2895
BssT1I CCWWGG 3 cut(s) 2135, 3573, 3811
Bst1107I GTATAC 1 cut(s) 2950
Bst2BI CACGAG 1 cut(s) 2895
Bst2UI CCWGG 8 cut(s) 618, 2754, 2974, 3196, 3399, 3567, 4098, 4290
BstACI GRCGYC 1 cut(s) 89
BstAFI CTTAAG 2 cut(s) 2276, 4322
BstAPI GCANNNNNTGC 1 cut(s) 3848
BstAUI TGTACA 1 cut(s) 1708
BstBI TTCGAA 1 cut(s) 2504
BstC8I GCNNGC 8 cut(s) 77, 149, 846, 1957, 2225, 2598, 2679, 3840
BstDSI CCRYGG 2 cut(s) 1273, 3132
BstFNI CGCG 3 cut(s) 1282, 2225, 2227
BstHHI GCGC 3 cut(s) 1611, 2225, 2227
BstMAI GTCTC 7 cut(s) 15, 355, 363, 785, 1211, 3112, 3929
BstMCI CGRYCG 1 cut(s) 38
BstNI CCWGG 8 cut(s) 618, 2754, 2974, 3196, 3399, 3567, 4098, 4290
BstNSI RCATGY 3 cut(s) 741, 2600, 2942
BstPAI GACNNNNGTC 1 cut(s) 3701
BstSFI CTRYAG 2 cut(s) 498, 2256
BstUI CGCG 3 cut(s) 1282, 2225, 2227
BstV2I GAAGAC 2 cut(s) 944, 4319
BstX2I RGATCY 6 cut(s) 549, 889, 1881, 2236, 3577, 3766
BstXI CCANNNNNNTGG 2 cut(s) 3133, 4194
BstYI RGATCY 6 cut(s) 549, 889, 1881, 2236, 3577, 3766
BstZ17I GTATAC 1 cut(s) 2950
Bsu36I CCTNAGG 2 cut(s) 1682, 1877
BtgI CCRYGG 2 cut(s) 1273, 3132
BtrI CACGTC 1 cut(s) 130
BtsI GCAGTG 1 cut(s) 464
BtsIMutI CAGTG 9 cut(s) 464, 789, 1680, 1704, 1736, 2006, 2743, 3240, 3240
BveI ACCTGC 4 cut(s) 106, 223, 614, 1137
Cac8I GCNNGC 8 cut(s) 77, 149, 846, 1957, 2225, 2598, 2679, 3840
CaiI CAGNNNCTG 1 cut(s) 4143
CciI TCATGA 4 cut(s) 706, 909, 2193, 3693
CfoI GCGC 3 cut(s) 1611, 2225, 2227
Cfr10I RCCGGY 1 cut(s) 147
CpoI CGGWCCG 1 cut(s) 1277
CseI GACGC 2 cut(s) 78, 4240
CspCI CAANNNNNGTGG 2 cut(s) 124, 159
CspI CGGWCCG 1 cut(s) 1277
DrdI GACNNNNNNGTC 1 cut(s) 3354
DriI GACNNNNNGTC 1 cut(s) 2460
DseDI GACNNNNNNGTC 1 cut(s) 3354
EaeI YGGCCR 5 cut(s) 15, 145, 1036, 1468, 3927
Eam1105I GACNNNNNGTC 1 cut(s) 2460
Ecl136II GAGCTC 2 cut(s) 169, 1517
Eco130I CCWWGG 3 cut(s) 2135, 3573, 3811
Eco147I AGGCCT 1 cut(s) 933
Eco24I GRGCYC 2 cut(s) 171, 1519
Eco32I GATATC 1 cut(s) 985
Eco47I GGWCC 8 cut(s) 118, 611, 1076, 1277, 1873, 3347, 3570, 4387
Eco53kI GAGCTC 2 cut(s) 169, 1517
Eco57I CTGAAG 5 cut(s) 956, 2574, 2580, 2702, 3447
Eco81I CCTNAGG 2 cut(s) 1682, 1877
Eco88I CYCGRG 1 cut(s) 1295
EcoICRI GAGCTC 2 cut(s) 169, 1517
EcoO109I RGGNCCY 4 cut(s) 118, 611, 1873, 4387
EcoRI GAATTC 1 cut(s) 2201
EcoRII CCWGG 8 cut(s) 616, 2752, 2972, 3194, 3397, 3565, 4096, 4288
EcoRV GATATC 1 cut(s) 985
EcoT14I CCWWGG 3 cut(s) 2135, 3573, 3811
EcoT22I ATGCAT 3 cut(s) 907, 3648, 3916
EcoT38I GRGCYC 2 cut(s) 171, 1519
ErhI CCWWGG 3 cut(s) 2135, 3573, 3811
Esp3I CGTCTC 1 cut(s) 15
FalI AAGNNNNNCTT 4 cut(s) 2259, 2291, 2700, 2732
FaqI GGGAC 5 cut(s) 104, 822, 841, 1996, 3756
FauI CCCGC 1 cut(s) 129
FauNDI CATATG 1 cut(s) 4414
FbaI TGATCA 1 cut(s) 2704
FblI GTMKAC 2 cut(s) 38, 2949
FriOI GRGCYC 2 cut(s) 171, 1519
FspBI CTAG 7 cut(s) 591, 831, 942, 1956, 2447, 3071, 3353
GlaI GCGC 3 cut(s) 1610, 2224, 2226
GsaI CCCAGC 6 cut(s) 88, 657, 1526, 3891, 4337, 4387
GsuI CTGGAG 3 cut(s) 600, 1932, 4080
HgaI GACGC 2 cut(s) 78, 4240
HhaI GCGC 3 cut(s) 1611, 2225, 2227
Hin1I GRCGYC 1 cut(s) 89
Hin6I GCGC 3 cut(s) 1609, 2223, 2225
HinP1I GCGC 3 cut(s) 1609, 2223, 2225
HincII GTYRAC 3 cut(s) 39, 755, 2454
HindII GTYRAC 3 cut(s) 39, 755, 2454
HindIII AAGCTT 4 cut(s) 55, 659, 3294, 3627
HphI GGTGA 6 cut(s) 1019, 1511, 2068, 2925, 4209, 4274
Hpy99I CGWCG 1 cut(s) 43
HpyCH4IV ACGT 2 cut(s) 129, 4316
HpySE526I ACGT 2 cut(s) 129, 4316
Hsp92I GRCGYC 1 cut(s) 89
HspAI GCGC 3 cut(s) 1609, 2223, 2225
KpnI GGTACC 1 cut(s) 2073
KroI GCCGGC 1 cut(s) 147
KroNI GCCGGC 1 cut(s) 149
Ksp22I TGATCA 1 cut(s) 2704
LguI GCTCTTC 2 cut(s) 159, 3540
LweI GCATC 9 cut(s) 213, 433, 803, 892, 1490, 3055, 3181, 3432, 4261
MaeI CTAG 7 cut(s) 591, 831, 942, 1956, 2447, 3071, 3353
MaeII ACGT 2 cut(s) 129, 4316
MbiI CCGCTC 2 cut(s) 190, 3884
MfeI CAATTG 2 cut(s) 2187, 4116
MflI RGATCY 6 cut(s) 549, 889, 1881, 2236, 3577, 3766
MhlI GDGCHC 5 cut(s) 171, 466, 1519, 1738, 2332
MlsI TGGCCA 3 cut(s) 1038, 1470, 3929
MluNI TGGCCA 3 cut(s) 1038, 1470, 3929
MlyI GAGTC 3 cut(s) 1681, 1910, 2701
MmeI TCCRAC 3 cut(s) 221, 1054, 2653
Mox20I TGGCCA 3 cut(s) 1038, 1470, 3929
Mph1103I ATGCAT 3 cut(s) 907, 3648, 3916
MroNI GCCGGC 1 cut(s) 147
MroXI GAANNNNTTC 5 cut(s) 351, 2201, 2958, 3393, 4316
MscI TGGCCA 3 cut(s) 1038, 1470, 3929
MslI CAYNNNNRTG 3 cut(s) 3131, 3212, 4043
Msp20I TGGCCA 3 cut(s) 1038, 1470, 3929
MspA1I CMGCKG 5 cut(s) 1526, 1952, 2681, 4333, 4370
MspCI CTTAAG 2 cut(s) 2276, 4322
MunI CAATTG 2 cut(s) 2187, 4116
Mva1269I GAATGC 3 cut(s) 905, 1992, 2188
MvaI CCWGG 8 cut(s) 618, 2754, 2974, 3196, 3399, 3567, 4098, 4290
MvnI CGCG 3 cut(s) 1282, 2225, 2227
NaeI GCCGGC 1 cut(s) 149
NciI CCSGG 5 cut(s) 34, 104, 1328, 3084, 4159
NdeI CATATG 1 cut(s) 4414
NgoMIV GCCGGC 1 cut(s) 147
NheI GCTAGC 1 cut(s) 1955
NmuCI GTSAC 7 cut(s) 949, 1051, 1180, 2637, 3403, 4246, 4262
NsiI ATGCAT 3 cut(s) 907, 3648, 3916
NspI RCATGY 3 cut(s) 741, 2600, 2942
NspV TTCGAA 1 cut(s) 2504
PaeI GCATGC 1 cut(s) 2600
PaeR7I CTCGAG 1 cut(s) 1295
PagI TCATGA 4 cut(s) 706, 909, 2193, 3693
PauI GCGCGC 1 cut(s) 2223
PceI AGGCCT 1 cut(s) 933
PciI ACATGT 2 cut(s) 737, 2938
PciSI GCTCTTC 2 cut(s) 159, 3540
PcsI WCGNNNNNNNCGW 1 cut(s) 2205
PctI GAATGC 3 cut(s) 905, 1992, 2188
PdiI GCCGGC 1 cut(s) 149
PdmI GAANNNNTTC 5 cut(s) 351, 2201, 2958, 3393, 4316
PflMI CCANNNNNTGG 2 cut(s) 2495, 3182
PfoI TCCNGGA 2 cut(s) 102, 3082
PleI GAGTC 3 cut(s) 1681, 1909, 2700
PpsI GAGTC 3 cut(s) 1681, 1909, 2700
PpuMI RGGWCCY 4 cut(s) 118, 611, 1873, 4387
PscI ACATGT 2 cut(s) 737, 2938
PshAI GACNNNNGTC 1 cut(s) 3701
PshBI ATTAAT 2 cut(s) 1755, 2247
PsiI TTATAA 1 cut(s) 1818
Psp124BI GAGCTC 2 cut(s) 171, 1519
Psp5II RGGWCCY 4 cut(s) 118, 611, 1873, 4387
Psp6I CCWGG 8 cut(s) 616, 2752, 2972, 3194, 3397, 3565, 4096, 4288
PspFI CCCAGC 6 cut(s) 84, 653, 1522, 3887, 4333, 4383
PspGI CCWGG 8 cut(s) 616, 2752, 2972, 3194, 3397, 3565, 4096, 4288
PspPPI RGGWCCY 4 cut(s) 118, 611, 1873, 4387
PsrI GAACNNNNNNTAC 2 cut(s) 680, 712
PstNI CAGNNNCTG 1 cut(s) 4143
PsuI RGATCY 6 cut(s) 549, 889, 1881, 2236, 3577, 3766
PteI GCGCGC 1 cut(s) 2223
PvuII CAGCTG 5 cut(s) 1526, 1952, 2681, 4333, 4370
RseI CAYNNNNRTG 3 cut(s) 3131, 3212, 4043
Rsr2I CGGWCCG 1 cut(s) 1277
RsrII CGGWCCG 1 cut(s) 1277
SacI GAGCTC 2 cut(s) 171, 1519
SalI GTCGAC 1 cut(s) 37
SapI GCTCTTC 2 cut(s) 159, 3540
ScaI AGTACT 1 cut(s) 3556
SchI GAGTC 3 cut(s) 1681, 1910, 2701
SduI GDGCHC 5 cut(s) 171, 466, 1519, 1738, 2332
SfaNI GCATC 9 cut(s) 213, 433, 803, 892, 1490, 3055, 3181, 3432, 4261
SfcI CTRYAG 2 cut(s) 498, 2256
Sfr274I CTCGAG 1 cut(s) 1295
SfuI TTCGAA 1 cut(s) 2504
SinI GGWCC 8 cut(s) 118, 611, 1076, 1277, 1873, 3347, 3570, 4387
SlaI CTCGAG 1 cut(s) 1295
SmiMI CAYNNNNRTG 3 cut(s) 3131, 3212, 4043
SmlI CTYRAG 5 cut(s) 1295, 2276, 3446, 4254, 4322
SmoI CTYRAG 5 cut(s) 1295, 2276, 3446, 4254, 4322
SpeI ACTAGT 1 cut(s) 941
SphI GCATGC 1 cut(s) 2600
SseBI AGGCCT 1 cut(s) 933
SsiI CCGC 8 cut(s) 79, 122, 180, 190, 1280, 3833, 3884, 4178
SspI AATATT 2 cut(s) 2306, 3383
SspMI CTAG 7 cut(s) 591, 831, 942, 1956, 2447, 3071, 3353
SstI GAGCTC 2 cut(s) 171, 1519
StuI AGGCCT 1 cut(s) 933
StyI CCWWGG 3 cut(s) 2135, 3573, 3811
TaiI ACGT 2 cut(s) 132, 4319
TaqI TCGA 9 cut(s) 38, 186, 240, 431, 1296, 2208, 2504, 2670, 3543
TatI WGTACW 3 cut(s) 1708, 3554, 3672
TauI GCSGC 3 cut(s) 182, 193, 3887
TscAI CASTG 9 cut(s) 471, 789, 1680, 1704, 1743, 2013, 2743, 3240, 3247
TseFI GTSAC 7 cut(s) 949, 1051, 1180, 2637, 3403, 4246, 4262
Tsp45I GTSAC 7 cut(s) 949, 1051, 1180, 2637, 3403, 4246, 4262
TspGWI ACGGA 2 cut(s) 2969, 3119
TspRI CASTG 9 cut(s) 471, 789, 1680, 1704, 1743, 2013, 2743, 3240, 3247
Van91I CCANNNNNTGG 2 cut(s) 2495, 3182
Vha464I CTTAAG 2 cut(s) 2276, 4322
VpaK11BI GGWCC 8 cut(s) 118, 611, 1076, 1277, 1873, 3347, 3570, 4387
VspI ATTAAT 2 cut(s) 1755, 2247
XapI RAATTY 6 cut(s) 1104, 1724, 2201, 2442, 4016, 4147
XbaI TCTAGA 1 cut(s) 2446
XceI RCATGY 3 cut(s) 741, 2600, 2942
XhoI CTCGAG 1 cut(s) 1295
XmiI GTMKAC 2 cut(s) 38, 2949
XmnI GAANNNNTTC 5 cut(s) 351, 2201, 2958, 3393, 4316
XspI CTAG 7 cut(s) 591, 831, 942, 1956, 2447, 3071, 3353
ZrmI AGTACT 1 cut(s) 3556
Zsp2I ATGCAT 3 cut(s) 907, 3648, 3916
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.