Rmu_sc0000925.1_g000009

Pleiotropic drug resistance protein 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000925.1
OG0000245
Physical Location & Seq
Forward (+)
49884 .. 54308
4425 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000925.1_g000009.1.cds

Sequence Viewer

Length: 2877 bp
atggcggctgcagcattggccggagaaggcttggtgcggtctggaagtagcatgaattggcgggcaacaagcatgaaagacatgtggaatgatcagccagatgcattccagaggagtgagaggaagcgggaggaggaggaggagctgaggtgggctgcaatagagcggctgcccacttatgacaggttgaagaaggggatgttgaggcaggtcatgagcgatggaaggatactgcatgatgaggttgatgttacaaagcttggggcagatgataagaagaagttgatggatagcatactaaaggttgttgacgatgataatgagaaatttctcaggaagctcagggacaggactgacagggttggaatcgaggttccaaagattgaagtgagattccaggatttatcagtcgagggagatgcatatgttgggaccagagcacttccaactctgtacaattccaccttaaatgcaatagagggagttcttggactttgtgggctctctccatcgaagaaaagggtagtgaagatacttcaagatgtgagtggaatagtgagaccagcaagaatgactctacttcttggacctcctggctcaggaaaaacaacatttctaaaggcactttctggaaaacttgatgatgatttaagggtaacaggaaaagttacctattgtggtcacgagttctccgaatttgttcctcagagaactagtgcatatattagccagcatgatcttcactatggtgagatgacagtacgcgagactcttgatttctctggacggtgcctgggagtcggaagcagttatgaaatgctggcagaagcatcaaggcgtgagaaacaagaaggcatacaaccggatcctgagattgatgcattcatgaaagccacagcagtggctggccagaaaagtagtttgatgacagattatgttcttaagatacttggattggatatttgcgctgatactatggtgggtgatgacatgaggcggggcatctctggagggcagaagaagcgtgtaactactggggaaatgttagttgggccagcaagagcccttttcatggatgaaatatcaacaggattggatagttccaccacatttcaaattgtcaagtacatgaggcagatggctcatattatggacatgacaatgatcatttctctcctgcagcctgcaccagagacatttgacctctttgatgacattatcctactctcagagggtcaaattgtctatcaaggttcccgtgacaatgttcttgatttttttgaacatatgggcttcaaatgcccgaaaaggaaaggtgttgcagactttttgcaagaagtaacttccaagaaggatcaggaacaatactggtttaaaaggaatcaaccttacaagtatatctccgtacccgagtttgctcaaaccttcaactccttttatattagtcaaaggctttctgaagagctaagagtcccttatgataagtctagtacccatccaggtgctttggtgagagaaaagtatggaatatctaattgggaactcttcaaggcatgcttctcaagggaatggctactgatgaagcgcaattcatttgtatacatattcaagaccacccagataacaatcatggctgtaatcgcattgactgtgttcttaagaacggaaatgaaagctggtcaaatacaagatgcagcaaaattttggggtgcattgttttttgtccatgacaatttaggtgcagcctatagatatctctttcttttaggggaaatgttagttgggccagcaagagcccttttcatggatgaaatatcaacaggattggatagttccaccacatttcaaattgtcaagtacatgaggcagatggctcatattatggacatgacaatgatcatttctctcctgcagcctgcaccagagacatttgacctctttgatgacattatcctactctcagagggtcaaattgtctatcaaggttcccgtgacaatgttcttgaattttttgaacatatgggcttcaaatgcccgaaaaggaaaggtgttgcagactttttgcaagaagtaacttccaagaaggatcaagaacaatactggtttaaaaggaatcaaccttacaagtatatctctgtacccgagtttgctcaaaccttcaactccttttatattagtcaaaggctttcagaagagctaagagtcccttataataagtctagtacccatccaggtgctttggtgagagaaaagtatggaatctctaattgggaactcttcaaggcatgcttctcaagggaatggctactgatgaagcgcaattcatttgtatacatattcaagaccacccagataacaatcatggctgtaatcgcattgactgtgttcttaagaacggaaatgaaagctggtcaaatacaagatgcagcaaaattttggggtgcattgtttttcagtctcatcaatgtcatgtttaatggaatggcagagcttgccatgacagttttcaggcttcctgtgttctataaacagagagatgccttgttctatcccgggtgggctttcgggttgcccctttggatcctcagaattcccatttcagtaatggagtcaggcatttggatcattcttacttattactccattggttttgcacctgctgcaagtaggtttttcaaacaattcttggctttctttggagtgcatcagatggctctctccctcttccgtttcattgcagctgttggaagaacagaagttgttgcacaaacaattggaacctttaccttgctactggtctttgtgcttggaggttttatagttgccaaaggcaaggtttccttcttttgggtttggagttttctcgacttgaagtaa

Protein Analysis

958

Amino Acids

109.39

Weight (kDa)

8.62

Isoelectric Point (pI)

39.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000245)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66950 AT2G36380
fragaria_vesca FvH4_3g29700 FvH4_3g29700 FvH4_3g29700 FvH4_3g29700 FvH4_3g29710 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29740 FvH4_3g29760 FvH4_3g29781 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150 FvH4_6g18150
malus_domestica MD02G1254900.v1.1 MD03G1119400.v1.1 MD03G1136800.v1.1 MD03G1137000.v1.1 MD04G1187500.v1.1 MD08G1208900.v1.1 MD08G1209000.v1.1 MD11G1159000.v1.1 MD11G1159100.v1.1 MD11G1159200.v1.1 MD12G1020800.v1.1 MD12G1021000.v1.1 MD14G1017900.v1.1 MD14G1018100.v1.1
prunus_persica Prupe.2G084300_v2.0.a1 Prupe.2G084300_v2.0.a1 Prupe.6G121200_v2.0.a1 Prupe.6G121200_v2.0.a1 Prupe.6G121500_v2.0.a1 Prupe.6G121800_v2.0.a1 Prupe.6G121900_v2.0.a1 Prupe.6G122100_v2.0.a1 Prupe.7G115200_v2.0.a1 Prupe.7G115200_v2.0.a1
pyrus_communis pycom02g21460 pycom03g09270 pycom03g09290 pycom07g05130 pycom08g18050 pycom11g12950 pycom11g12960 pycom11g12970 pycom12g01950 pycom12g01980 pycom14g01620 pycom14g01710 pycom14g01720 pycom16g12190
rosa_chinensis RchiOBHm_Chr1g0340571 RchiOBHm_Chr2g0107751 RchiOBHm_Chr3g0472451 RchiOBHm_Chr5g0055051 RchiOBHm_Chr5g0055091 RchiOBHm_Chr5g0055111 RchiOBHm_Chr5g0055121 RchiOBHm_Chr5g0055131 RchiOBHm_Chr5g0062371 RchiOBHm_Chr6g0265121 RchiOBHm_Chr6g0275771 RchiOBHm_Chr7g0187231
rosa_laevigata RLG00000006319 RLG00000013820 RLG00000024078 RLG00000034960 RLG00000034963 RLG00000034965 RLG00000034966 RLG00000034968 RLG00000034970
rosa_multiflora Rmu_co8358859.1_g000001 Rmu_co8422375.1_g000001 Rmu_co8427767.1_g000001 Rmu_co8474941.1_g000001 Rmu_sc0000925.1_g000009 Rmu_sc0001694.1_g000015 Rmu_sc0001694.1_g000022 Rmu_sc0001694.1_g000024 Rmu_sc0001694.1_g000030 Rmu_sc0003993.1_g000001 Rmu_sc0010632.1_g000001 Rmu_sc0035175.1_g000001
rosa_roxburghii Rroxscaffold_1G00025230 Rroxscaffold_1G00025240 Rroxscaffold_1G00025300 Rroxscaffold_1G00025320 Rroxscaffold_1G00025330 Rroxscaffold_1G00025360 Rroxscaffold_1G00025440 Rroxscaffold_1G00033590 Rroxscaffold_6G00408900
rosa_rugosa Rorug03G0125500.1 Rorug03G0125600.1 Rorug05G0290600 Rorug05G0291100 Rorug05G0291200 Rorug05G0291300
rosa_samantha Rh1CG035400 Rh1CG243200 Rh2DG410600 Rh3AG177500 Rh3CG193800 Rh3CG200900 Rh3DG171700 Rh5AG043000 Rh5AG360500 Rh5AG360900 Rh5AG361000 Rh5AG361300 Rh5AG441100 Rh5CG393700 Rh5CG393900 Rh5CG394200 Rh5DG247300 Rh5DG385200 Rh5DG385500 Rh5DG385800 Rh6BG272200 Rh6DG204000 Rh7AG084700 Rh7AG178300
rosa_wichuraiana Rw0G022120 Rw3G016410 Rw5G033910 Rw5G033920 Rw5G033940 Rw5G033960 Rw5G033970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2211
AarI CACCTGC 1 cut(s) 2665
Acc36I ACCTGC 2 cut(s) 199, 2665
AccB1I GGYRCC 1 cut(s) 789
AccBSI CCGCTC 1 cut(s) 166
AccI GTMKAC 2 cut(s) 1599, 2331
AccII CGCG 1 cut(s) 765
AciI CCGC 6 cut(s) 5, 37, 61, 127, 166, 997
AclWI GGATC 7 cut(s) 860, 873, 1362, 2094, 2575, 2588, 2630
AcoI YGGCCR 2 cut(s) 18, 907
AcsI RAATTY 6 cut(s) 326, 695, 1700, 2006, 2432, 2589
AcuI CTGAAG 1 cut(s) 1479
AfaI GTAC 8 cut(s) 455, 762, 1127, 1407, 1492, 1859, 2139, 2224
AfiI CCNNNNNNNGG 4 cut(s) 599, 1072, 1804, 2847
AflII CTTAAG 3 cut(s) 941, 1657, 2389
AflIII ACRYGT 1 cut(s) 81
AhlI ACTAGT 1 cut(s) 713
AjnI CCWGG 5 cut(s) 396, 592, 792, 1498, 2230
AjuI GAANNNNNNNTTGG 8 cut(s) 1032, 1064, 1519, 1551, 1764, 1796, 2251, 2283
AleI CACNNNNGTG 2 cut(s) 747, 899
AloI GAACNNNNNNTCC 2 cut(s) 357, 389
AluBI AGCT 9 cut(s) 145, 259, 340, 1465, 1676, 2197, 2408, 2491, 2741
AluI AGCT 9 cut(s) 145, 259, 340, 1465, 1676, 2197, 2408, 2491, 2741
Alw21I GWGCWC 1 cut(s) 442
Alw26I GTCTC 5 cut(s) 553, 761, 1187, 1919, 2462
AlwI GGATC 7 cut(s) 860, 873, 1362, 2094, 2575, 2588, 2630
AlwNI CAGNNNCTG 1 cut(s) 905
Ama87I CYCGRG 3 cut(s) 1409, 2141, 2552
AoxI GGCC 4 cut(s) 18, 907, 1052, 1784
ApoI RAATTY 6 cut(s) 326, 695, 1700, 2006, 2432, 2589
Asp700I GAANNNNTTC 1 cut(s) 699
AspLEI GCGC 3 cut(s) 968, 1587, 2319
AspS9I GGNCC 4 cut(s) 432, 587, 1052, 1784
AsuC2I CCSGG 2 cut(s) 2553, 2554
AsuHPI GGTGA 4 cut(s) 761, 995, 1522, 2254
AvaI CYCGRG 3 cut(s) 1409, 2141, 2552
AvaII GGWCC 2 cut(s) 432, 587
BaeI ACNNNNGTAYC 2 cut(s) 963, 996
BalI TGGCCA 1 cut(s) 909
BamHI GGATCC 2 cut(s) 865, 2580
BanI GGYRCC 1 cut(s) 789
BanII GRGCYC 3 cut(s) 504, 1066, 1798
BauI CACGAG 1 cut(s) 683
Bbv12I GWGCWC 1 cut(s) 442
BbvCI CCTCAGC 1 cut(s) 146
BccI CCATC 8 cut(s) 215, 280, 517, 1132, 1503, 1864, 2235, 2704
BcgI CGANNNNNNTGC 2 cut(s) 401, 435
BciT130I CCWGG 5 cut(s) 398, 594, 794, 1500, 2232
BciVI GTATCC 1 cut(s) 222
BclI TGATCA 3 cut(s) 91, 1164, 1896
BcnI CCSGG 2 cut(s) 2553, 2554
BcoDI GTCTC 5 cut(s) 553, 761, 1187, 1919, 2462
BcuI ACTAGT 1 cut(s) 713
BfaI CTAG 3 cut(s) 714, 1488, 2220
BfmI CTRYAG 4 cut(s) 9, 1178, 1747, 1910
BfrI CTTAAG 3 cut(s) 941, 1657, 2389
BfuAI ACCTGC 2 cut(s) 199, 2665
BfuI GTATCC 1 cut(s) 222
Bme1390I CCNGG 7 cut(s) 398, 594, 794, 1500, 2232, 2553, 2554
Bme18I GGWCC 2 cut(s) 432, 587
BmeT110I CYCGRG 3 cut(s) 1409, 2141, 2552
BmgT120I GGNCC 4 cut(s) 432, 587, 1052, 1784
BmiI GGNNCC 8 cut(s) 375, 433, 791, 867, 1255, 1987, 2582, 2779
BmrFI CCNGG 7 cut(s) 398, 594, 794, 1500, 2232, 2553, 2554
BmrI ACTGGG 1 cut(s) 1044
BmsI GCATC 9 cut(s) 91, 409, 839, 868, 1011, 1681, 2413, 2527, 2713
BmuI ACTGGG 1 cut(s) 1044
BpmI CTGGAG 1 cut(s) 1029
Bpu10I CCTNAGC 3 cut(s) 146, 341, 598
BpuEI CTTGAG 2 cut(s) 1546, 2278
BpuMI CCSGG 2 cut(s) 2553, 2554
BsaBI GATNNNNATC 2 cut(s) 1625, 2357
BsaI GGTCTC 1 cut(s) 553
BsaJI CCNNGG 2 cut(s) 793, 2552
BsaWI WCCGGW 1 cut(s) 862
BsaXI ACNNNNNCTCC 4 cut(s) 134, 164, 674, 704
Bsc4I CCNNNNNNNGG 4 cut(s) 599, 1072, 1804, 2847
Bse1I ACTGG 4 cut(s) 1039, 1373, 2105, 2799
Bse3DI GCAATG 1 cut(s) 2733
Bse8I GATNNNNATC 2 cut(s) 1625, 2357
BseBI CCWGG 5 cut(s) 398, 594, 794, 1500, 2232
BseDI CCNNGG 2 cut(s) 793, 2552
BseGI GGATG 5 cut(s) 204, 1081, 1495, 1813, 2227
BseJI GATNNNNATC 2 cut(s) 1625, 2357
BseLI CCNNNNNNNGG 4 cut(s) 599, 1072, 1804, 2847
BseMI GCAATG 1 cut(s) 2733
BseMII CTCAG 9 cut(s) 137, 346, 355, 612, 719, 861, 1242, 1974, 2599
BseNI ACTGG 4 cut(s) 1039, 1373, 2105, 2799
BseRI GAGGAG 5 cut(s) 127, 146, 149, 152, 155
BsgI GTGCAG 3 cut(s) 1170, 1761, 1902
Bsh1236I CGCG 1 cut(s) 765
BshFI GGCC 4 cut(s) 20, 909, 1054, 1786
BshNI GGYRCC 1 cut(s) 789
BsiHKAI GWGCWC 1 cut(s) 442
BsiHKCI CYCGRG 3 cut(s) 1409, 2141, 2552
BsiSI CCGG 3 cut(s) 21, 863, 2553
BslFI GGGAC 4 cut(s) 359, 445, 1457, 2189
BslI CCNNNNNNNGG 4 cut(s) 599, 1072, 1804, 2847
BsmAI GTCTC 5 cut(s) 553, 761, 1187, 1919, 2462
BsmFI GGGAC 4 cut(s) 359, 445, 1457, 2189
BsmI GAATGC 2 cut(s) 104, 881
BsnI GGCC 4 cut(s) 20, 909, 1054, 1786
Bso31I GGTCTC 1 cut(s) 553
BsoBI CYCGRG 3 cut(s) 1409, 2141, 2552
Bsp1286I GDGCHC 4 cut(s) 442, 504, 1066, 1798
Bsp1407I TGTACA 1 cut(s) 453
Bsp143I GATC 9 cut(s) 91, 736, 865, 1164, 1354, 1896, 2086, 2580, 2622
BspACI CCGC 6 cut(s) 5, 37, 61, 127, 166, 997
BspANI GGCC 4 cut(s) 20, 909, 1054, 1786
BspCNI CTCAG 9 cut(s) 138, 345, 354, 611, 718, 862, 1241, 1973, 2598
BspFNI CGCG 1 cut(s) 765
BspHI TCATGA 2 cut(s) 213, 885
BspLI GGNNCC 8 cut(s) 375, 433, 791, 867, 1255, 1987, 2582, 2779
BspMAI CTGCAG 3 cut(s) 13, 1182, 1914
BspMI ACCTGC 2 cut(s) 199, 2665
BspPI GGATC 7 cut(s) 860, 873, 1362, 2094, 2575, 2588, 2630
BspQI GCTCTTC 2 cut(s) 1455, 2187
BspT107I GGYRCC 1 cut(s) 789
BspTI CTTAAG 3 cut(s) 941, 1657, 2389
BspTNI GGTCTC 1 cut(s) 553
BsrBI CCGCTC 1 cut(s) 166
BsrDI GCAATG 1 cut(s) 2733
BsrGI TGTACA 1 cut(s) 453
BsrI ACTGG 4 cut(s) 1039, 1373, 2105, 2799
BssECI CCNNGG 2 cut(s) 793, 2552
BssMI GATC 9 cut(s) 91, 736, 865, 1164, 1354, 1896, 2086, 2580, 2622
BssNAI GTATAC 2 cut(s) 1600, 2332
BssSI CACGAG 1 cut(s) 683
Bst1107I GTATAC 2 cut(s) 1600, 2332
Bst2BI CACGAG 1 cut(s) 683
Bst2UI CCWGG 5 cut(s) 398, 594, 794, 1500, 2232
Bst4CI ACNGT 5 cut(s) 760, 789, 1651, 2383, 2503
Bst6I CTCTTC 5 cut(s) 1455, 1550, 2187, 2282, 2729
BstAFI CTTAAG 3 cut(s) 941, 1657, 2389
BstAPI GCANNNNNTGC 2 cut(s) 2492, 2660
BstAUI TGTACA 1 cut(s) 453
BstENI CCTNNNNNAGG 1 cut(s) 597
BstF5I GGATG 5 cut(s) 204, 1081, 1495, 1813, 2227
BstFNI CGCG 1 cut(s) 765
BstHHI GCGC 3 cut(s) 968, 1587, 2319
BstKTI GATC 9 cut(s) 94, 739, 868, 1167, 1357, 1899, 2089, 2583, 2625
BstMAI GTCTC 5 cut(s) 553, 761, 1187, 1919, 2462
BstMBI GATC 9 cut(s) 91, 736, 865, 1164, 1354, 1896, 2086, 2580, 2622
BstMWI GCNNNNNNNGC 9 cut(s) 11, 17, 1021, 1299, 1640, 2031, 2372, 2492, 2660
BstNI CCWGG 5 cut(s) 398, 594, 794, 1500, 2232
BstNSI RCATGY 3 cut(s) 85, 1557, 2289
BstSCI CCNGG 7 cut(s) 396, 592, 792, 1498, 2230, 2551, 2552
BstSFI CTRYAG 4 cut(s) 9, 1178, 1747, 1910
BstUI CGCG 1 cut(s) 765
BstX2I RGATCY 2 cut(s) 865, 2580
BstXI CCANNNNNNTGG 1 cut(s) 901
BstYI RGATCY 2 cut(s) 865, 2580
BstZ17I GTATAC 2 cut(s) 1600, 2332
BsuI GTATCC 1 cut(s) 222
BsuRI GGCC 4 cut(s) 20, 909, 1054, 1786
BtgZI GCGATG 1 cut(s) 234
BtsCI GGATG 5 cut(s) 204, 1081, 1495, 1813, 2227
BtsI GCAGTG 1 cut(s) 906
BtsIMutI CAGTG 1 cut(s) 906
BveI ACCTGC 2 cut(s) 199, 2665
CaiI CAGNNNCTG 1 cut(s) 905
CciI TCATGA 2 cut(s) 213, 885
CfoI GCGC 3 cut(s) 968, 1587, 2319
Cfr13I GGNCC 4 cut(s) 432, 587, 1052, 1784
Cfr9I CCCGGG 1 cut(s) 2552
Csp6I GTAC 8 cut(s) 454, 761, 1126, 1406, 1491, 1858, 2138, 2223
CviQI GTAC 8 cut(s) 454, 761, 1126, 1406, 1491, 1858, 2138, 2223
DpnI GATC 9 cut(s) 93, 738, 867, 1166, 1356, 1898, 2088, 2582, 2624
DpnII GATC 9 cut(s) 91, 736, 865, 1164, 1354, 1896, 2086, 2580, 2622
DraI TTTAAA 2 cut(s) 1375, 2107
EaeI YGGCCR 2 cut(s) 18, 907
Eam1104I CTCTTC 5 cut(s) 1455, 1550, 2187, 2282, 2729
EarI CTCTTC 5 cut(s) 1455, 1550, 2187, 2282, 2729
Eco24I GRGCYC 3 cut(s) 504, 1066, 1798
Eco31I GGTCTC 1 cut(s) 553
Eco32I GATATC 1 cut(s) 1754
Eco47I GGWCC 2 cut(s) 432, 587
Eco57I CTGAAG 1 cut(s) 1479
Eco88I CYCGRG 3 cut(s) 1409, 2141, 2552
EcoNI CCTNNNNNAGG 1 cut(s) 597
EcoRI GAATTC 1 cut(s) 2589
EcoRII CCWGG 5 cut(s) 396, 592, 792, 1498, 2230
EcoRV GATATC 1 cut(s) 1754
EcoT22I ATGCAT 3 cut(s) 106, 424, 883
EcoT38I GRGCYC 3 cut(s) 504, 1066, 1798
FaqI GGGAC 4 cut(s) 359, 445, 1457, 2189
FauI CCCGC 3 cut(s) 54, 120, 990
FauNDI CATATG 3 cut(s) 424, 1287, 2019
FbaI TGATCA 3 cut(s) 91, 1164, 1896
FblI GTMKAC 2 cut(s) 1599, 2331
FokI GGATG 5 cut(s) 211, 1088, 1482, 1820, 2214
FriOI GRGCYC 3 cut(s) 504, 1066, 1798
FspBI CTAG 3 cut(s) 714, 1488, 2220
GlaI GCGC 3 cut(s) 967, 1586, 2318
GsuI CTGGAG 1 cut(s) 1029
HaeIII GGCC 4 cut(s) 20, 909, 1054, 1786
HapII CCGG 3 cut(s) 21, 863, 2553
HhaI GCGC 3 cut(s) 968, 1587, 2319
Hin6I GCGC 3 cut(s) 966, 1585, 2317
HinP1I GCGC 3 cut(s) 966, 1585, 2317
HincII GTYRAC 1 cut(s) 310
HindII GTYRAC 1 cut(s) 310
HindIII AAGCTT 1 cut(s) 257
HpaII CCGG 3 cut(s) 21, 863, 2553
HphI GGTGA 4 cut(s) 761, 995, 1522, 2254
Hpy166II GTNNAC 3 cut(s) 310, 1600, 2332
Hpy188I TCNGA 9 cut(s) 694, 708, 803, 1231, 1459, 1963, 2191, 2588, 2709
Hpy8I GTNNAC 3 cut(s) 310, 1600, 2332
HpyAV CCTTC 9 cut(s) 20, 187, 219, 845, 1345, 1435, 2077, 2167, 2851
HpyCH4III ACNGT 5 cut(s) 760, 789, 1651, 2383, 2503
HpyF10VI GCNNNNNNNGC 9 cut(s) 11, 17, 1021, 1299, 1640, 2031, 2372, 2492, 2660
HspAI GCGC 3 cut(s) 966, 1585, 2317
Ksp22I TGATCA 3 cut(s) 91, 1164, 1896
Kzo9I GATC 9 cut(s) 91, 736, 865, 1164, 1354, 1896, 2086, 2580, 2622
LguI GCTCTTC 2 cut(s) 1455, 2187
LmnI GCTCC 1 cut(s) 142
LweI GCATC 9 cut(s) 91, 409, 839, 868, 1011, 1681, 2413, 2527, 2713
MaeI CTAG 3 cut(s) 714, 1488, 2220
MaeIII GTNAC 9 cut(s) 250, 655, 667, 680, 1027, 1259, 1339, 1991, 2071
MalI GATC 9 cut(s) 93, 738, 867, 1166, 1356, 1898, 2088, 2582, 2624
MbiI CCGCTC 1 cut(s) 166
MboI GATC 9 cut(s) 91, 736, 865, 1164, 1354, 1896, 2086, 2580, 2622
MfeI CAATTG 1 cut(s) 2772
MflI RGATCY 2 cut(s) 865, 2580
MhlI GDGCHC 4 cut(s) 442, 504, 1066, 1798
MlsI TGGCCA 1 cut(s) 909
MluNI TGGCCA 1 cut(s) 909
MlyI GAGTC 6 cut(s) 568, 763, 807, 1479, 2211, 2618
MmeI TCCRAC 4 cut(s) 343, 470, 781, 2725
Mox20I TGGCCA 1 cut(s) 909
Mph1103I ATGCAT 3 cut(s) 106, 424, 883
MroXI GAANNNNTTC 1 cut(s) 699
MscI TGGCCA 1 cut(s) 909
MseI TTAA 8 cut(s) 467, 650, 942, 1374, 1658, 2106, 2390, 2475
MslI CAYNNNNRTG 6 cut(s) 747, 899, 1160, 1500, 1892, 2232
Msp20I TGGCCA 1 cut(s) 909
MspA1I CMGCKG 1 cut(s) 2741
MspCI CTTAAG 3 cut(s) 941, 1657, 2389
MspI CCGG 3 cut(s) 21, 863, 2553
MspR9I CCNGG 7 cut(s) 398, 594, 794, 1500, 2232, 2553, 2554
MunI CAATTG 1 cut(s) 2772
Mva1269I GAATGC 2 cut(s) 104, 881
MvaI CCWGG 5 cut(s) 398, 594, 794, 1500, 2232
MvnI CGCG 1 cut(s) 765
MwoI GCNNNNNNNGC 9 cut(s) 11, 17, 1021, 1299, 1640, 2031, 2372, 2492, 2660
NciI CCSGG 2 cut(s) 2553, 2554
NdeI CATATG 3 cut(s) 424, 1287, 2019
NdeII GATC 9 cut(s) 91, 736, 865, 1164, 1354, 1896, 2086, 2580, 2622
NlaIV GGNNCC 8 cut(s) 375, 433, 791, 867, 1255, 1987, 2582, 2779
NmuCI GTSAC 3 cut(s) 680, 1259, 1991
NsiI ATGCAT 3 cut(s) 106, 424, 883
NspI RCATGY 3 cut(s) 85, 1557, 2289
OliI CACNNNNGTG 2 cut(s) 747, 899
PaeI GCATGC 2 cut(s) 1557, 2289
PagI TCATGA 2 cut(s) 213, 885
PaqCI CACCTGC 1 cut(s) 2665
PciI ACATGT 1 cut(s) 81
PciSI GCTCTTC 2 cut(s) 1455, 2187
PcsI WCGNNNNNNNCGW 1 cut(s) 690
PctI GAATGC 2 cut(s) 104, 881
PdmI GAANNNNTTC 1 cut(s) 699
PfeI GAWTC 5 cut(s) 366, 393, 1381, 2113, 2259
PfoI TCCNGGA 1 cut(s) 396
PleI GAGTC 6 cut(s) 568, 763, 806, 1478, 2210, 2617
PpsI GAGTC 6 cut(s) 568, 763, 806, 1478, 2210, 2617
PscI ACATGT 1 cut(s) 81
PsiI TTATAA 1 cut(s) 2211
Psp6I CCWGG 5 cut(s) 396, 592, 792, 1498, 2230
PspGI CCWGG 5 cut(s) 396, 592, 792, 1498, 2230
PspN4I GGNNCC 8 cut(s) 375, 433, 791, 867, 1255, 1987, 2582, 2779
PspPI GGNCC 4 cut(s) 432, 587, 1052, 1784
PstI CTGCAG 3 cut(s) 13, 1182, 1914
PstNI CAGNNNCTG 1 cut(s) 905
PsuI RGATCY 2 cut(s) 865, 2580
PvuII CAGCTG 1 cut(s) 2741
RsaI GTAC 8 cut(s) 455, 762, 1127, 1407, 1492, 1859, 2139, 2224
RsaNI GTAC 8 cut(s) 454, 761, 1126, 1406, 1491, 1858, 2138, 2223
RseI CAYNNNNRTG 6 cut(s) 747, 899, 1160, 1500, 1892, 2232
SapI GCTCTTC 2 cut(s) 1455, 2187
SaqAI TTAA 8 cut(s) 467, 650, 942, 1374, 1658, 2106, 2390, 2475
Sau3AI GATC 9 cut(s) 91, 736, 865, 1164, 1354, 1896, 2086, 2580, 2622
Sau96I GGNCC 4 cut(s) 432, 587, 1052, 1784
SchI GAGTC 6 cut(s) 568, 763, 807, 1479, 2211, 2618
ScrFI CCNGG 7 cut(s) 398, 594, 794, 1500, 2232, 2553, 2554
SduI GDGCHC 4 cut(s) 442, 504, 1066, 1798
SfaNI GCATC 9 cut(s) 91, 409, 839, 868, 1011, 1681, 2413, 2527, 2713
SfcI CTRYAG 4 cut(s) 9, 1178, 1747, 1910
SinI GGWCC 2 cut(s) 432, 587
SmaI CCCGGG 1 cut(s) 2554
SmiMI CAYNNNNRTG 6 cut(s) 747, 899, 1160, 1500, 1892, 2232
SmlI CTYRAG 5 cut(s) 941, 1561, 1657, 2293, 2389
SmoI CTYRAG 5 cut(s) 941, 1561, 1657, 2293, 2389
SpeI ACTAGT 1 cut(s) 713
SphI GCATGC 2 cut(s) 1557, 2289
SsiI CCGC 6 cut(s) 5, 37, 61, 127, 166, 997
SspMI CTAG 3 cut(s) 714, 1488, 2220
StyD4I CCNGG 7 cut(s) 396, 592, 792, 1498, 2230, 2551, 2552
TaaI ACNGT 5 cut(s) 760, 789, 1651, 2383, 2503
TaqI TCGA 4 cut(s) 369, 411, 512, 2865
TatI WGTACW 3 cut(s) 453, 1125, 1857
TauI GCSGC 2 cut(s) 8, 169
TfiI GAWTC 5 cut(s) 366, 393, 1381, 2113, 2259
Tru1I TTAA 8 cut(s) 467, 650, 942, 1374, 1658, 2106, 2390, 2475
Tru9I TTAA 8 cut(s) 467, 650, 942, 1374, 1658, 2106, 2390, 2475
TscAI CASTG 1 cut(s) 906
TseFI GTSAC 3 cut(s) 680, 1259, 1991
Tsp45I GTSAC 3 cut(s) 680, 1259, 1991
TspGWI ACGGA 4 cut(s) 1393, 1679, 2411, 2717
TspMI CCCGGG 1 cut(s) 2552
TspRI CASTG 1 cut(s) 906
Vha464I CTTAAG 3 cut(s) 941, 1657, 2389
VpaK11BI GGWCC 2 cut(s) 432, 587
XagI CCTNNNNNAGG 1 cut(s) 597
XapI RAATTY 6 cut(s) 326, 695, 1700, 2006, 2432, 2589
XceI RCATGY 3 cut(s) 85, 1557, 2289
XcmI CCANNNNNNNNNTGG 1 cut(s) 2602
XmaI CCCGGG 1 cut(s) 2552
XmiI GTMKAC 2 cut(s) 1599, 2331
XmnI GAANNNNTTC 1 cut(s) 699
XspI CTAG 3 cut(s) 714, 1488, 2220
Zsp2I ATGCAT 3 cut(s) 106, 424, 883
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.