FvH4_3g42540

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000421
Physical Location & Seq
Reverse (-)
35485187 .. 35486169
983 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g42540.t1

Sequence Viewer

Length: 552 bp
ATGGAAACGCGGGGATTAGGTCGTCCTTCACTGGAATTGCTGCTCTCTGTCTTCGCTAGAATTGCTGCTCTCTGTCTTCGGCTGCGTCTTCTTCTTCGGCTGCGTCTTCGTCTCCTCTTCGTCAACACTGTACTACTCTGGTCTTCGTCAGGTCTTCATCTCCTCTTTGTCCTCGTCCTTCGCTGGAATTGCTGCTCTCTGTCCTCGTCTGGTCTTCATCTCCTCTTCGTCCTCGTCCTTCGCTGGTATTGCTGCGGACTCTTCCTCCAAAAAATAAAAGAAGAAGAAGAAGAAGCGCGCGCTCTCTCTCTCTCTCGCTGCAGCAATCGGCTAATAATTATAGGGAGGGAGGAAGAGATGAGAGGAATTGATAAGCATGTTGTCTCTGTCCTGAACACTATGCCAAGAGGGACACCTCCTGTTAGAGCACGTGGAAGTGGAAGTGGAAGTGCTAGTGCTAGTGCTAGTGCTAGTGCAAGTGTTAATGCCGGTACTAGCAATGATTCCAATGAAGCGGTTGGTCCTGAAATTGAGATGATAGATGATAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

184

Amino Acids

20.15

Weight (kDa)

9.14

Isoelectric Point (pI)

48.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000421)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G08267
fragaria_vesca FvH4_2g14331 FvH4_2g16371 FvH4_2g26163 FvH4_3g42540 FvH4_4g02102 FvH4_4g12491 FvH4_4g35171 FvH4_5g06632 FvH4_5g06632 FvH4_5g06632 FvH4_5g08811 FvH4_5g08812 FvH4_5g23531 FvH4_6g10272 FvH4_6g40844 FvH4_7g16803 FvH4_7g16804
malus_domestica MD11G1099500.v1.1 MD17G1176800.v1.1
pyrus_communis pycom05g07840 pycom06g08730 pycom07g12010 pycom07g12020 pycom10g07270 pycom11g17470 pycom12g10610 pycom12g14240 pycom13g22040 pycom15g02440
rosa_chinensis RchiOBHm_Chr1g0371321 RchiOBHm_Chr2g0102701 RchiOBHm_Chr3g0465681 RchiOBHm_Chr4g0420941 RchiOBHm_Chr4g0434271 RchiOBHm_Chr4g0442721 RchiOBHm_Chr6g0262081 RchiOBHm_Chr6g0278171 RchiOBHm_Chr6g0294991 RchiOBHm_Chr6g0295001 RchiOBHm_Chr7g0205361 RchiOBHm_Chr7g0205371 RchiOBHm_Chr7g0223471
rosa_laevigata RLG00000005266
rosa_multiflora Rmu_sc0000493.1_g000033 Rmu_sc0000493.1_g000034 Rmu_sc0000507.1_g000007 Rmu_sc0000843.1_g000001 Rmu_sc0001075.1_g000033 Rmu_sc0002077.1_g000007 Rmu_sc0002077.1_g000008 Rmu_sc0002329.1_g000029 Rmu_sc0002539.1_g000077 Rmu_sc0002655.1_g000006 Rmu_sc0003127.1_g000020 Rmu_sc0003765.1_g000054 Rmu_sc0004368.1_g000023 Rmu_sc0004753.1_g000022 Rmu_sc0005297.1_g000014 Rmu_sc0007633.1_g000010 Rmu_sc0008164.1_g000005 Rmu_sc0008191.1_g000003 Rmu_sc0017900.1_g000005 Rmu_sc0022727.1_g000002
rosa_roxburghii Rroxscaffold_2G00079920 Rroxscaffold_3G00255890 Rroxscaffold_4G00295340 Rroxscaffold_4G00296360 Rroxscaffold_4G00299640 Rroxscaffold_6G00388210
rosa_rugosa Rorug02G0466700 Rorug04G0123200 Rorug05G0074800 Rorug07G0202900
rosa_samantha Rh1DG134700 Rh3CG159000 Rh4AG331000 Rh5AG521100 Rh5BG136400 Rh5DG127300 Rh5DG383100 Rh5DG386100 Rh5DG458000 Rh6CG450400 Rh7CG233800 Rh7DG407100
rosa_wichuraiana Rw1G004960 Rw1G005730 Rw1G006360 Rw1G017400 Rw2G013190 Rw2G022210 Rw2G029640 Rw5G020910 Rw5G036930 Rw6G016200 Rw7G018170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 10, 298, 300
AciI CCGC 3 cut(s) 10, 255, 515
AcvI CACGTG 1 cut(s) 431
AfaI GTAC 2 cut(s) 132, 493
Alw21I GWGCWC 1 cut(s) 430
Alw26I GTCTC 2 cut(s) 116, 388
ApeKI GCWGC 8 cut(s) 40, 65, 82, 100, 192, 252, 318, 321
AspLEI GCGC 3 cut(s) 298, 300, 302
AspS9I GGNCC 1 cut(s) 521
AvaII GGWCC 1 cut(s) 521
BbrPI CACGTG 1 cut(s) 431
BbsI GAAGAC 7 cut(s) 43, 68, 80, 98, 135, 146, 206
Bbv12I GWGCWC 1 cut(s) 430
BbvI GCAGC 8 cut(s) 27, 52, 69, 87, 179, 239, 305, 333
BcoDI GTCTC 2 cut(s) 116, 388
BfaI CTAG 6 cut(s) 57, 453, 459, 465, 471, 495
BfmI CTRYAG 1 cut(s) 319
BisI GCNGC 8 cut(s) 41, 66, 83, 101, 193, 253, 319, 322
BlsI GCNGC 8 cut(s) 42, 67, 84, 102, 194, 254, 320, 323
Bme18I GGWCC 1 cut(s) 521
BmgT120I GGNCC 1 cut(s) 521
BpiI GAAGAC 7 cut(s) 43, 68, 80, 98, 135, 146, 206
BsaAI YACGTR 1 cut(s) 431
BsaXI ACNNNNNCTCC 2 cut(s) 249, 279
Bse118I RCCGGY 1 cut(s) 488
Bse1I ACTGG 1 cut(s) 36
Bse3DI GCAATG 1 cut(s) 505
BseMI GCAATG 1 cut(s) 505
BseNI ACTGG 1 cut(s) 36
BsePI GCGCGC 2 cut(s) 296, 298
BseRI GAGGAG 3 cut(s) 104, 152, 212
BseXI GCAGC 8 cut(s) 27, 52, 69, 87, 179, 239, 305, 333
Bsh1236I CGCG 3 cut(s) 10, 298, 300
BsiHKAI GWGCWC 1 cut(s) 430
BsiSI CCGG 1 cut(s) 489
BslFI GGGAC 1 cut(s) 424
BsmAI GTCTC 2 cut(s) 116, 388
BsmBI CGTCTC 1 cut(s) 116
BsmFI GGGAC 1 cut(s) 424
Bsp1286I GDGCHC 1 cut(s) 430
BspACI CCGC 3 cut(s) 10, 255, 515
BspFNI CGCG 3 cut(s) 10, 298, 300
BspMAI CTGCAG 1 cut(s) 323
BsrDI GCAATG 1 cut(s) 505
BsrFI RCCGGY 1 cut(s) 488
BsrI ACTGG 1 cut(s) 36
BssAI RCCGGY 1 cut(s) 488
BssHII GCGCGC 2 cut(s) 296, 298
Bst4CI ACNGT 1 cut(s) 130
Bst6I CTCTTC 4 cut(s) 122, 230, 266, 348
BstBAI YACGTR 1 cut(s) 431
BstC8I GCNNGC 2 cut(s) 298, 300
BstFNI CGCG 3 cut(s) 10, 298, 300
BstHHI GCGC 3 cut(s) 298, 300, 302
BstMAI GTCTC 2 cut(s) 116, 388
BstMWI GCNNNNNNNGC 3 cut(s) 62, 189, 249
BstNSI RCATGY 1 cut(s) 380
BstSFI CTRYAG 1 cut(s) 319
BstUI CGCG 3 cut(s) 10, 298, 300
BstV1I GCAGC 8 cut(s) 27, 52, 69, 87, 179, 239, 305, 333
BstV2I GAAGAC 7 cut(s) 43, 68, 80, 98, 135, 146, 206
BtsIMutI CAGTG 2 cut(s) 29, 126
Cac8I GCNNGC 2 cut(s) 298, 300
CfoI GCGC 3 cut(s) 298, 300, 302
Cfr10I RCCGGY 1 cut(s) 488
Cfr13I GGNCC 1 cut(s) 521
CseI GACGC 2 cut(s) 74, 92
Csp6I GTAC 2 cut(s) 131, 492
CviAII CATG 1 cut(s) 377
CviJI RGCY 3 cut(s) 82, 100, 331
CviKI_1 RGCY 3 cut(s) 82, 100, 331
CviQI GTAC 2 cut(s) 131, 492
Eam1104I CTCTTC 4 cut(s) 122, 230, 266, 348
EarI CTCTTC 4 cut(s) 122, 230, 266, 348
Eco47I GGWCC 1 cut(s) 521
Eco72I CACGTG 1 cut(s) 431
Esp3I CGTCTC 1 cut(s) 116
FaeI CATG 1 cut(s) 380
FaiI YATR 3 cut(s) 341, 378, 401
FaqI GGGAC 1 cut(s) 424
FatI CATG 1 cut(s) 376
FauI CCCGC 1 cut(s) 3
Fnu4HI GCNGC 8 cut(s) 41, 66, 83, 101, 193, 253, 319, 322
Fsp4HI GCNGC 8 cut(s) 41, 66, 83, 101, 193, 253, 319, 322
FspBI CTAG 6 cut(s) 57, 453, 459, 465, 471, 495
GlaI GCGC 3 cut(s) 297, 299, 301
GluI GCNGC 8 cut(s) 41, 66, 83, 101, 193, 253, 319, 322
HapII CCGG 1 cut(s) 489
HgaI GACGC 2 cut(s) 74, 92
HhaI GCGC 3 cut(s) 298, 300, 302
Hin1II CATG 1 cut(s) 380
Hin6I GCGC 3 cut(s) 296, 298, 300
HinP1I GCGC 3 cut(s) 296, 298, 300
HincII GTYRAC 1 cut(s) 124
HindII GTYRAC 1 cut(s) 124
HinfI GANTC 2 cut(s) 258, 503
HpaII CCGG 1 cut(s) 489
Hpy166II GTNNAC 1 cut(s) 124
Hpy188III TCNNGA 2 cut(s) 391, 524
Hpy8I GTNNAC 1 cut(s) 124
HpyAV CCTTC 3 cut(s) 36, 188, 248
HpyCH4III ACNGT 1 cut(s) 130
HpyCH4IV ACGT 1 cut(s) 430
HpyCH4V TGCA 2 cut(s) 321, 476
HpyF10VI GCNNNNNNNGC 3 cut(s) 62, 189, 249
HpySE526I ACGT 1 cut(s) 430
Hsp92II CATG 1 cut(s) 380
HspAI GCGC 3 cut(s) 296, 298, 300
Lsp1109I GCAGC 8 cut(s) 27, 52, 69, 87, 179, 239, 305, 333
MaeI CTAG 6 cut(s) 57, 453, 459, 465, 471, 495
MaeII ACGT 1 cut(s) 430
MhlI GDGCHC 1 cut(s) 430
MluCI AATT 6 cut(s) 35, 60, 187, 336, 366, 528
MlyI GAGTC 1 cut(s) 252
MseI TTAA 1 cut(s) 483
MspI CCGG 1 cut(s) 489
MvnI CGCG 3 cut(s) 10, 298, 300
MwoI GCNNNNNNNGC 3 cut(s) 62, 189, 249
NlaIII CATG 1 cut(s) 380
NspI RCATGY 1 cut(s) 380
PauI GCGCGC 2 cut(s) 296, 298
PfeI GAWTC 1 cut(s) 503
PkrI GCNGC 8 cut(s) 42, 67, 84, 102, 194, 254, 320, 323
PleI GAGTC 1 cut(s) 252
PmaCI CACGTG 1 cut(s) 431
PmlI CACGTG 1 cut(s) 431
PpsI GAGTC 1 cut(s) 252
Ppu21I YACGTR 1 cut(s) 431
PspCI CACGTG 1 cut(s) 431
PspPI GGNCC 1 cut(s) 521
PstI CTGCAG 1 cut(s) 323
PteI GCGCGC 2 cut(s) 296, 298
RsaI GTAC 2 cut(s) 132, 493
RsaNI GTAC 2 cut(s) 131, 492
SaqAI TTAA 1 cut(s) 483
SatI GCNGC 8 cut(s) 41, 66, 83, 101, 193, 253, 319, 322
Sau96I GGNCC 1 cut(s) 521
SchI GAGTC 1 cut(s) 252
SduI GDGCHC 1 cut(s) 430
SetI ASST 4 cut(s) 22, 154, 418, 433
SfcI CTRYAG 1 cut(s) 319
SinI GGWCC 1 cut(s) 521
Sse9I AATT 6 cut(s) 35, 60, 187, 336, 366, 528
SsiI CCGC 3 cut(s) 10, 255, 515
SspMI CTAG 6 cut(s) 57, 453, 459, 465, 471, 495
TaaI ACNGT 1 cut(s) 130
TaiI ACGT 1 cut(s) 433
TasI AATT 6 cut(s) 35, 60, 187, 336, 366, 528
TatI WGTACW 1 cut(s) 130
TfiI GAWTC 1 cut(s) 503
Tru1I TTAA 1 cut(s) 483
Tru9I TTAA 1 cut(s) 483
TscAI CASTG 2 cut(s) 36, 133
TseI GCWGC 8 cut(s) 40, 65, 82, 100, 192, 252, 318, 321
TspDTI ATGAA 3 cut(s) 146, 206, 525
TspRI CASTG 2 cut(s) 36, 133
VpaK11BI GGWCC 1 cut(s) 521
XceI RCATGY 1 cut(s) 380
XspI CTAG 6 cut(s) 57, 453, 459, 465, 471, 495
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.