Rh3CG159000

Protein of unknown function (DUF 659)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0000421
Physical Location & Seq
Reverse (-)
13358609 .. 13382005
23397 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG159000.1

Sequence Viewer

Length: 1095 bp
ATGGCGTTTGGAAAAAGAAAACCATCCCGTCAAGAACCAATTTTTGAAGAAAATTATGAAGGTGATGTCGGCGAGCATGAAGACAATAATATTGTTGAAGAAACTCAAGCAAGTAATACAGAGTCTACAGACCAATCATCGAGTAGAAACAGCCACGAACAAGCTCAAGAATCTCAAGAAATTCCAATGAATTCTGACATAAAGCCATTACTCAATGAAGTTATTATCGCCAGTGGAGCGCAAGGAAAAAATTCAGGTGGAACAAAGACATGGACCTGCAAACATTGTAATATTCAGTTTAAGAGTTCATATACTCGCATTCACTACCACTTTTTTGGTAATCTTCCTGGAAAAAAATCAGAGATTCGTCGATGTCAATCATTGATTAATAATCGGGAGGAATATGAGAGGGTTCGCAGAATGGTTATGGAAGCTGAAAAAAAAGGAGTTTCTTCATCTTTGAAAAGCTCAACAATCTTGAGGCAACAACCGCAAAAATCCACCGCAGGTGCTCTTGATGACATGTTCAAGATTATGGACAAAAATATTGTTGATATGAAGGTGATGAGAGGATTGTGCGCTAATGGAATTCCATTTAATGTGTTAAGAAATCCCCAATTTCATGAGATGATTTCAGCTATAAATCATGGACCCAGGGGTTATAAGGCTCCATCTTCTGAAAAAGCAAGAACTACTTTGCTTGATGAGTGTAAACGAAGTCTGGAAAAAGAATTAGCTCCTGTAAAAGATACATGGTTTACTCACGGTGTTTCAATTGTTTCAGATGGATGGTCTAACATGAAGCATGAGCCACTTATCAACATTATTGCTGCAAATAGTAGAGGAGCGTTGTTTCTTTATGCTCAAGATTTTTCTGGGATACAAAAAACTGGTGAAGTGATTGCTGACTTTATGTTTACTGCAATTGAAGATGATAGAGCAGTTCCAGATGAAAGTGATCCAATGCCTCAAGATCAAGAGAGAATTGGAAAGGAAATTGCCAAAAAGTGTGGTGGTGTACCATTAGTGGCAAAGACTCCGAATGTGAGAGTAATTGAGGCACTTGATTTTTTTGAAGTTCATGCATGGTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT

Protein Analysis

364

Amino Acids

40.93

Weight (kDa)

6.24

Isoelectric Point (pI)

46.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF659 PF04937 224 - 311 5.1e-17 Domain of unknown function (DUF659)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000421)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G08267
fragaria_vesca FvH4_2g14331 FvH4_2g16371 FvH4_2g26163 FvH4_3g42540 FvH4_4g02102 FvH4_4g12491 FvH4_4g35171 FvH4_5g06632 FvH4_5g06632 FvH4_5g06632 FvH4_5g08811 FvH4_5g08812 FvH4_5g23531 FvH4_6g10272 FvH4_6g40844 FvH4_7g16803 FvH4_7g16804
malus_domestica MD11G1099500.v1.1 MD17G1176800.v1.1
pyrus_communis pycom05g07840 pycom06g08730 pycom07g12010 pycom07g12020 pycom10g07270 pycom11g17470 pycom12g10610 pycom12g14240 pycom13g22040 pycom15g02440
rosa_chinensis RchiOBHm_Chr1g0371321 RchiOBHm_Chr2g0102701 RchiOBHm_Chr3g0465681 RchiOBHm_Chr4g0420941 RchiOBHm_Chr4g0434271 RchiOBHm_Chr4g0442721 RchiOBHm_Chr6g0262081 RchiOBHm_Chr6g0278171 RchiOBHm_Chr6g0294991 RchiOBHm_Chr6g0295001 RchiOBHm_Chr7g0205361 RchiOBHm_Chr7g0205371 RchiOBHm_Chr7g0223471
rosa_laevigata RLG00000005266
rosa_multiflora Rmu_sc0000493.1_g000033 Rmu_sc0000493.1_g000034 Rmu_sc0000507.1_g000007 Rmu_sc0000843.1_g000001 Rmu_sc0001075.1_g000033 Rmu_sc0002077.1_g000007 Rmu_sc0002077.1_g000008 Rmu_sc0002329.1_g000029 Rmu_sc0002539.1_g000077 Rmu_sc0002655.1_g000006 Rmu_sc0003127.1_g000020 Rmu_sc0003765.1_g000054 Rmu_sc0004368.1_g000023 Rmu_sc0004753.1_g000022 Rmu_sc0005297.1_g000014 Rmu_sc0007633.1_g000010 Rmu_sc0008164.1_g000005 Rmu_sc0008191.1_g000003 Rmu_sc0017900.1_g000005 Rmu_sc0022727.1_g000002
rosa_roxburghii Rroxscaffold_2G00079920 Rroxscaffold_3G00255890 Rroxscaffold_4G00295340 Rroxscaffold_4G00296360 Rroxscaffold_4G00299640 Rroxscaffold_6G00388210
rosa_rugosa Rorug02G0466700 Rorug04G0123200 Rorug05G0074800 Rorug07G0202900
rosa_samantha Rh1DG134700 Rh3CG159000 Rh4AG331000 Rh5AG521100 Rh5BG136400 Rh5DG127300 Rh5DG383100 Rh5DG386100 Rh5DG458000 Rh6CG450400 Rh7CG233800 Rh7DG407100
rosa_wichuraiana Rw1G004960 Rw1G005730 Rw1G006360 Rw1G017400 Rw2G013190 Rw2G022210 Rw2G029640 Rw5G020910 Rw5G036930 Rw6G016200 Rw7G018170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 663
AarI CACCTGC 1 cut(s) 497
Acc36I ACCTGC 2 cut(s) 284, 497
AccI GTMKAC 1 cut(s) 125
AciI CCGC 2 cut(s) 491, 504
AclWI GGATC 1 cut(s) 953
AcsI RAATTY 4 cut(s) 180, 190, 250, 588
AfaI GTAC 1 cut(s) 1020
AflIII ACRYGT 1 cut(s) 522
AgsI TTSAA 7 cut(s) 47, 98, 463, 529, 774, 929, 1076
AjnI CCWGG 2 cut(s) 346, 653
AluBI AGCT 5 cut(s) 164, 434, 468, 638, 737
AluI AGCT 5 cut(s) 164, 434, 468, 638, 737
Alw21I GWGCWC 1 cut(s) 514
AlwI GGATC 1 cut(s) 953
ApeKI GCWGC 1 cut(s) 830
ApoI RAATTY 4 cut(s) 180, 190, 250, 588
AseI ATTAAT 1 cut(s) 387
Asp700I GAANNNNTTC 1 cut(s) 250
AspLEI GCGC 2 cut(s) 241, 581
AspS9I GGNCC 2 cut(s) 273, 650
AsuHPI GGTGA 3 cut(s) 74, 574, 905
AvaII GGWCC 2 cut(s) 273, 650
BbsI GAAGAC 1 cut(s) 87
Bbv12I GWGCWC 1 cut(s) 514
BbvI GCAGC 1 cut(s) 817
BccI CCATC 4 cut(s) 31, 679, 779, 783
BciT130I CCWGG 2 cut(s) 348, 655
BciVI GTATCC 1 cut(s) 873
BfmI CTRYAG 1 cut(s) 126
BfuAI ACCTGC 2 cut(s) 284, 497
BfuI GTATCC 1 cut(s) 873
BisI GCNGC 1 cut(s) 831
BlsI GCNGC 1 cut(s) 832
Bme1390I CCNGG 2 cut(s) 348, 655
Bme18I GGWCC 2 cut(s) 273, 650
BmgT120I GGNCC 2 cut(s) 273, 650
BmiI GGNNCC 2 cut(s) 652, 669
BmrFI CCNGG 2 cut(s) 348, 655
BpiI GAAGAC 1 cut(s) 87
BpuEI CTTGAG 6 cut(s) 90, 150, 159, 499, 849, 954
BsaBI GATNNNNATC 1 cut(s) 376
BsaJI CCNNGG 2 cut(s) 653, 654
Bse1I ACTGG 2 cut(s) 231, 895
Bse8I GATNNNNATC 1 cut(s) 376
BseBI CCWGG 2 cut(s) 348, 655
BseDI CCNNGG 2 cut(s) 653, 654
BseGI GGATG 2 cut(s) 23, 794
BseJI GATNNNNATC 1 cut(s) 376
BseNI ACTGG 2 cut(s) 231, 895
BseRI GAGGAG 1 cut(s) 858
BseXI GCAGC 1 cut(s) 817
BsiHKAI GWGCWC 1 cut(s) 514
BsmI GAATGC 1 cut(s) 318
Bsp1286I GDGCHC 1 cut(s) 514
Bsp143I GATC 2 cut(s) 958, 973
BspACI CCGC 2 cut(s) 491, 504
BspHI TCATGA 1 cut(s) 622
BspLI GGNNCC 2 cut(s) 652, 669
BspMI ACCTGC 2 cut(s) 284, 497
BspPI GGATC 1 cut(s) 953
BsrI ACTGG 2 cut(s) 231, 895
BssECI CCNNGG 2 cut(s) 653, 654
BssMI GATC 2 cut(s) 958, 973
Bst2UI CCWGG 2 cut(s) 348, 655
Bst4CI ACNGT 1 cut(s) 767
BstC8I GCNNGC 1 cut(s) 74
BstF5I GGATG 2 cut(s) 23, 794
BstHHI GCGC 2 cut(s) 241, 581
BstKTI GATC 2 cut(s) 961, 976
BstMBI GATC 2 cut(s) 958, 973
BstMWI GCNNNNNNNGC 2 cut(s) 236, 490
BstNI CCWGG 2 cut(s) 348, 655
BstNSI RCATGY 1 cut(s) 526
BstSCI CCNGG 2 cut(s) 346, 653
BstSFI CTRYAG 1 cut(s) 126
BstV1I GCAGC 1 cut(s) 817
BstV2I GAAGAC 1 cut(s) 87
BstXI CCANNNNNNTGG 1 cut(s) 335
BsuI GTATCC 1 cut(s) 873
BtsCI GGATG 2 cut(s) 23, 794
BtsIMutI CAGTG 1 cut(s) 238
BveI ACCTGC 2 cut(s) 284, 497
Cac8I GCNNGC 1 cut(s) 74
CciI TCATGA 1 cut(s) 622
CfoI GCGC 2 cut(s) 241, 581
Cfr13I GGNCC 2 cut(s) 273, 650
Csp6I GTAC 1 cut(s) 1019
CspCI CAANNNNNGTGG 2 cut(s) 991, 1026
CviJI RGCY 9 cut(s) 153, 164, 205, 434, 468, 638, 668, 737, 811
CviKI_1 RGCY 9 cut(s) 153, 164, 205, 434, 468, 638, 668, 737, 811
CviQI GTAC 1 cut(s) 1019
DpnI GATC 2 cut(s) 960, 975
DpnII GATC 2 cut(s) 958, 973
Eco47I GGWCC 2 cut(s) 273, 650
EcoRI GAATTC 2 cut(s) 190, 588
EcoRII CCWGG 2 cut(s) 346, 653
EcoT22I ATGCAT 1 cut(s) 1087
FalI AAGNNNNNCTT 2 cut(s) 679, 711
FblI GTMKAC 1 cut(s) 125
Fnu4HI GCNGC 1 cut(s) 831
FokI GGATG 2 cut(s) 10, 801
Fsp4HI GCNGC 1 cut(s) 831
GlaI GCGC 2 cut(s) 240, 580
GluI GCNGC 1 cut(s) 831
HhaI GCGC 2 cut(s) 241, 581
Hin6I GCGC 2 cut(s) 239, 579
HinP1I GCGC 2 cut(s) 239, 579
HinfI GANTC 4 cut(s) 122, 170, 364, 1036
HphI GGTGA 3 cut(s) 74, 574, 905
Hpy166II GTNNAC 5 cut(s) 126, 713, 759, 918, 1019
Hpy188I TCNGA 5 cut(s) 196, 361, 679, 784, 1041
Hpy8I GTNNAC 5 cut(s) 126, 713, 759, 918, 1019
Hpy99I CGWCG 1 cut(s) 372
HpyAV CCTTC 2 cut(s) 53, 553
HpyCH4III ACNGT 1 cut(s) 767
HpyCH4V TGCA 4 cut(s) 279, 833, 923, 1085
HpyF10VI GCNNNNNNNGC 2 cut(s) 236, 490
HspAI GCGC 2 cut(s) 239, 579
Kzo9I GATC 2 cut(s) 958, 973
LmnI GCTCC 4 cut(s) 236, 673, 742, 845
Lsp1109I GCAGC 1 cut(s) 817
MalI GATC 2 cut(s) 960, 975
MboI GATC 2 cut(s) 958, 973
MboII GAAGA 7 cut(s) 59, 92, 110, 335, 444, 666, 941
MfeI CAATTG 2 cut(s) 774, 924
MhlI GDGCHC 1 cut(s) 514
MlyI GAGTC 2 cut(s) 131, 1030
MnlI CCTC 7 cut(s) 391, 402, 474, 563, 836, 978, 1051
Mph1103I ATGCAT 1 cut(s) 1087
MroXI GAANNNNTTC 1 cut(s) 250
MseI TTAA 5 cut(s) 300, 387, 597, 605, 1093
MspR9I CCNGG 2 cut(s) 348, 655
MunI CAATTG 2 cut(s) 774, 924
Mva1269I GAATGC 1 cut(s) 318
MvaI CCWGG 2 cut(s) 348, 655
MwoI GCNNNNNNNGC 2 cut(s) 236, 490
NdeII GATC 2 cut(s) 958, 973
NlaIV GGNNCC 2 cut(s) 652, 669
NsiI ATGCAT 1 cut(s) 1087
NspI RCATGY 1 cut(s) 526
PagI TCATGA 1 cut(s) 622
PaqCI CACCTGC 1 cut(s) 497
PasI CCCWGGG 1 cut(s) 654
PciI ACATGT 1 cut(s) 522
PctI GAATGC 1 cut(s) 318
PdmI GAANNNNTTC 1 cut(s) 250
PfeI GAWTC 2 cut(s) 170, 364
PfoI TCCNGGA 1 cut(s) 346
PkrI GCNGC 1 cut(s) 832
PleI GAGTC 2 cut(s) 130, 1030
PpsI GAGTC 2 cut(s) 130, 1030
PscI ACATGT 1 cut(s) 522
PshBI ATTAAT 1 cut(s) 387
PsiI TTATAA 1 cut(s) 663
Psp6I CCWGG 2 cut(s) 346, 653
PspGI CCWGG 2 cut(s) 346, 653
PspN4I GGNNCC 2 cut(s) 652, 669
PspPI GGNCC 2 cut(s) 273, 650
RsaI GTAC 1 cut(s) 1020
RsaNI GTAC 1 cut(s) 1019
SaqAI TTAA 5 cut(s) 300, 387, 597, 605, 1093
SatI GCNGC 1 cut(s) 831
Sau3AI GATC 2 cut(s) 958, 973
Sau96I GGNCC 2 cut(s) 273, 650
SchI GAGTC 2 cut(s) 131, 1030
ScrFI CCNGG 2 cut(s) 348, 655
SduI GDGCHC 1 cut(s) 514
SfcI CTRYAG 1 cut(s) 126
SinI GGWCC 2 cut(s) 273, 650
SmlI CTYRAG 6 cut(s) 105, 165, 174, 478, 864, 969
SmoI CTYRAG 6 cut(s) 105, 165, 174, 478, 864, 969
SsiI CCGC 2 cut(s) 491, 504
SspI AATATT 3 cut(s) 91, 292, 547
StyD4I CCNGG 2 cut(s) 346, 653
TaaI ACNGT 1 cut(s) 767
TaqI TCGA 2 cut(s) 140, 370
TfiI GAWTC 2 cut(s) 170, 364
Tru1I TTAA 5 cut(s) 300, 387, 597, 605, 1093
Tru9I TTAA 5 cut(s) 300, 387, 597, 605, 1093
TscAI CASTG 1 cut(s) 238
TseI GCWGC 1 cut(s) 830
TspRI CASTG 1 cut(s) 238
VpaK11BI GGWCC 2 cut(s) 273, 650
VspI ATTAAT 1 cut(s) 387
XapI RAATTY 4 cut(s) 180, 190, 250, 588
XceI RCATGY 1 cut(s) 526
XmiI GTMKAC 1 cut(s) 125
XmnI GAANNNNTTC 1 cut(s) 250
Zsp2I ATGCAT 1 cut(s) 1087
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.