Rmu_sc0000843.1_g000001

Protein of unknown function (DUF 659)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000843.1
OG0000421
Physical Location & Seq
Reverse (-)
2 .. 699
698 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000843.1_g000001.1.cds

Sequence Viewer

Length: 698 bp
atgagcagtggaggaacacctcctattagttctagtgctgggtctgttaacgtcggtgctagtagtggatctgctgatcctgaaaatgagaccatagatgataaagcaccattgtggaaatttgtgaagaagaaagaaaaaatgtcgggtggaggaagttggaggtggcagtgcaatttttgcaaattgcactacaacgggtcttatactagagttcgtggccatttgttgaaagaaggaacagcgggggtggcaatttgcagcaaggttactcctcatgcatttactcaaatgtccaatttggtgagagaatgcaaggagagactaatgaatgtagctcctagacaagttcctctaccatcatcaggacatcaaggggggagttccgccacaagtagctatgggatgagttatggtgcctataaacaagcacaaacagcaagtgatggtggaaagaagaggaaaacaactgttagttcagttgaaaaggccttccaaaactcagctagggagcaatgcgatagtgaggttgcaaggatgtactacaccggtggcttatctttcaacctagctagaaatccacactatcggaactcctgcattcgtgcttctacccttccaggctacaatgctctaaggaccacacttcttgcaaaagaaaggaaaaatattgagcatcatttagagccaatcaagat
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659

Protein Analysis

232

Amino Acids

25.23

Weight (kDa)

9.69

Isoelectric Point (pI)

49.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000421)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G08267
fragaria_vesca FvH4_2g14331 FvH4_2g16371 FvH4_2g26163 FvH4_3g42540 FvH4_4g02102 FvH4_4g12491 FvH4_4g35171 FvH4_5g06632 FvH4_5g06632 FvH4_5g06632 FvH4_5g08811 FvH4_5g08812 FvH4_5g23531 FvH4_6g10272 FvH4_6g40844 FvH4_7g16803 FvH4_7g16804
malus_domestica MD11G1099500.v1.1 MD17G1176800.v1.1
pyrus_communis pycom05g07840 pycom06g08730 pycom07g12010 pycom07g12020 pycom10g07270 pycom11g17470 pycom12g10610 pycom12g14240 pycom13g22040 pycom15g02440
rosa_chinensis RchiOBHm_Chr1g0371321 RchiOBHm_Chr2g0102701 RchiOBHm_Chr3g0465681 RchiOBHm_Chr4g0420941 RchiOBHm_Chr4g0434271 RchiOBHm_Chr4g0442721 RchiOBHm_Chr6g0262081 RchiOBHm_Chr6g0278171 RchiOBHm_Chr6g0294991 RchiOBHm_Chr6g0295001 RchiOBHm_Chr7g0205361 RchiOBHm_Chr7g0205371 RchiOBHm_Chr7g0223471
rosa_laevigata RLG00000005266
rosa_multiflora Rmu_sc0000493.1_g000033 Rmu_sc0000493.1_g000034 Rmu_sc0000507.1_g000007 Rmu_sc0000843.1_g000001 Rmu_sc0001075.1_g000033 Rmu_sc0002077.1_g000007 Rmu_sc0002077.1_g000008 Rmu_sc0002329.1_g000029 Rmu_sc0002539.1_g000077 Rmu_sc0002655.1_g000006 Rmu_sc0003127.1_g000020 Rmu_sc0003765.1_g000054 Rmu_sc0004368.1_g000023 Rmu_sc0004753.1_g000022 Rmu_sc0005297.1_g000014 Rmu_sc0007633.1_g000010 Rmu_sc0008164.1_g000005 Rmu_sc0008191.1_g000003 Rmu_sc0017900.1_g000005 Rmu_sc0022727.1_g000002
rosa_roxburghii Rroxscaffold_2G00079920 Rroxscaffold_3G00255890 Rroxscaffold_4G00295340 Rroxscaffold_4G00296360 Rroxscaffold_4G00299640 Rroxscaffold_6G00388210
rosa_rugosa Rorug02G0466700 Rorug04G0123200 Rorug05G0074800 Rorug07G0202900
rosa_samantha Rh1DG134700 Rh3CG159000 Rh4AG331000 Rh5AG521100 Rh5BG136400 Rh5DG127300 Rh5DG383100 Rh5DG386100 Rh5DG458000 Rh6CG450400 Rh7CG233800 Rh7DG407100
rosa_wichuraiana Rw1G004960 Rw1G005730 Rw1G006360 Rw1G017400 Rw2G013190 Rw2G022210 Rw2G029640 Rw5G020910 Rw5G036930 Rw6G016200 Rw7G018170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 416
AciI CCGC 2 cut(s) 245, 387
AclWI GGATC 2 cut(s) 71, 76
AcoI YGGCCR 1 cut(s) 220
AcsI RAATTY 1 cut(s) 119
AfaI GTAC 1 cut(s) 542
AfiI CCNNNNNNNGG 1 cut(s) 365
AgeI ACCGGT 1 cut(s) 548
AgsI TTSAA 3 cut(s) 232, 485, 565
AjnI CCWGG 1 cut(s) 619
AleI CACNNNNGTG 1 cut(s) 112
AluBI AGCT 4 cut(s) 338, 399, 506, 572
AluI AGCT 4 cut(s) 338, 399, 506, 572
Alw26I GTCTC 2 cut(s) 83, 316
AlwI GGATC 2 cut(s) 71, 76
AoxI GGCC 2 cut(s) 220, 489
ApeKI GCWGC 1 cut(s) 261
ApoI RAATTY 1 cut(s) 119
AsiGI ACCGGT 1 cut(s) 548
AspS9I GGNCC 1 cut(s) 639
AsuHPI GGTGA 1 cut(s) 316
AvaII GGWCC 1 cut(s) 639
BalI TGGCCA 1 cut(s) 222
BanI GGYRCC 1 cut(s) 416
BbvI GCAGC 1 cut(s) 273
BccI CCATC 2 cut(s) 367, 440
BciT130I CCWGG 1 cut(s) 621
BcoDI GTCTC 2 cut(s) 83, 316
BfaI CTAG 7 cut(s) 33, 60, 210, 342, 507, 569, 573
BisI GCNGC 1 cut(s) 262
BlsI GCNGC 1 cut(s) 263
Bme1390I CCNGG 1 cut(s) 621
Bme18I GGWCC 1 cut(s) 639
BmgT120I GGNCC 1 cut(s) 639
BmiI GGNNCC 1 cut(s) 418
BmrFI CCNGG 1 cut(s) 621
BmsI GCATC 1 cut(s) 685
BsaI GGTCTC 1 cut(s) 83
BsaWI WCCGGW 1 cut(s) 548
Bsc4I CCNNNNNNNGG 1 cut(s) 365
Bse118I RCCGGY 1 cut(s) 548
Bse3DI GCAATG 1 cut(s) 521
BseBI CCWGG 1 cut(s) 621
BseGI GGATG 2 cut(s) 411, 543
BseLI CCNNNNNNNGG 1 cut(s) 365
BseMI GCAATG 1 cut(s) 521
BseMII CTCAG 1 cut(s) 516
BseRI GAGGAG 1 cut(s) 264
BseXI GCAGC 1 cut(s) 273
BseYI CCCAGC 1 cut(s) 38
BshFI GGCC 2 cut(s) 222, 491
BshNI GGYRCC 1 cut(s) 416
BshTI ACCGGT 1 cut(s) 548
BsiSI CCGG 1 cut(s) 549
BslI CCNNNNNNNGG 1 cut(s) 365
BsmAI GTCTC 2 cut(s) 83, 316
BsmI GAATGC 2 cut(s) 317, 600
BsnI GGCC 2 cut(s) 222, 491
Bso31I GGTCTC 1 cut(s) 83
Bsp143I GATC 2 cut(s) 68, 76
BspACI CCGC 2 cut(s) 245, 387
BspANI GGCC 2 cut(s) 222, 491
BspCNI CTCAG 1 cut(s) 515
BspLI GGNNCC 1 cut(s) 418
BspPI GGATC 2 cut(s) 71, 76
BspT107I GGYRCC 1 cut(s) 416
BspTNI GGTCTC 1 cut(s) 83
BsrDI GCAATG 1 cut(s) 521
BsrFI RCCGGY 1 cut(s) 548
BssAI RCCGGY 1 cut(s) 548
BssMI GATC 2 cut(s) 68, 76
Bst2UI CCWGG 1 cut(s) 621
Bst4CI ACNGT 1 cut(s) 472
Bst6I CTCTTC 1 cut(s) 452
BstAPI GCANNNNNTGC 1 cut(s) 180
BstDEI CTNAG 2 cut(s) 502, 635
BstF5I GGATG 2 cut(s) 411, 543
BstKTI GATC 2 cut(s) 71, 79
BstMAI GTCTC 2 cut(s) 83, 316
BstMBI GATC 2 cut(s) 68, 76
BstMWI GCNNNNNNNGC 3 cut(s) 180, 251, 437
BstNI CCWGG 1 cut(s) 621
BstSCI CCNGG 1 cut(s) 619
BstV1I GCAGC 1 cut(s) 273
BstX2I RGATCY 1 cut(s) 68
BstYI RGATCY 1 cut(s) 68
BsuRI GGCC 2 cut(s) 222, 491
BtsCI GGATG 2 cut(s) 411, 543
BtsI GCAGTG 2 cut(s) 13, 176
BtsIMutI CAGTG 2 cut(s) 13, 176
Cfr10I RCCGGY 1 cut(s) 548
Cfr13I GGNCC 1 cut(s) 639
Csp6I GTAC 1 cut(s) 541
CspAI ACCGGT 1 cut(s) 548
CspCI CAANNNNNGTGG 2 cut(s) 631, 666
CviAII CATG 1 cut(s) 278
CviJI RGCY 9 cut(s) 222, 338, 399, 491, 506, 555, 572, 624, 688
CviKI_1 RGCY 9 cut(s) 222, 338, 399, 491, 506, 555, 572, 624, 688
CviQI GTAC 1 cut(s) 541
DdeI CTNAG 2 cut(s) 502, 635
DpnI GATC 2 cut(s) 70, 78
DpnII GATC 2 cut(s) 68, 76
EaeI YGGCCR 1 cut(s) 220
Eam1104I CTCTTC 1 cut(s) 452
EarI CTCTTC 1 cut(s) 452
EciI GGCGGA 1 cut(s) 376
Eco147I AGGCCT 1 cut(s) 491
Eco31I GGTCTC 1 cut(s) 83
Eco47I GGWCC 1 cut(s) 639
EcoRII CCWGG 1 cut(s) 619
EcoT22I ATGCAT 1 cut(s) 283
FaeI CATG 1 cut(s) 281
FaiI YATR 6 cut(s) 95, 207, 279, 402, 414, 423
FatI CATG 1 cut(s) 277
FauI CCCGC 1 cut(s) 238
Fnu4HI GCNGC 1 cut(s) 262
FokI GGATG 2 cut(s) 418, 550
Fsp4HI GCNGC 1 cut(s) 262
FspBI CTAG 7 cut(s) 33, 60, 210, 342, 507, 569, 573
GluI GCNGC 1 cut(s) 262
GsaI CCCAGC 1 cut(s) 42
HaeIII GGCC 2 cut(s) 222, 491
HapII CCGG 1 cut(s) 549
Hin1II CATG 1 cut(s) 281
HincII GTYRAC 1 cut(s) 49
HindII GTYRAC 1 cut(s) 49
HpaI GTTAAC 1 cut(s) 49
HpaII CCGG 1 cut(s) 549
HphI GGTGA 1 cut(s) 316
Hpy166II GTNNAC 1 cut(s) 49
Hpy188I TCNGA 1 cut(s) 591
Hpy188III TCNNGA 3 cut(s) 80, 366, 694
Hpy8I GTNNAC 1 cut(s) 49
Hpy99I CGWCG 1 cut(s) 56
HpyAV CCTTC 3 cut(s) 230, 502, 626
HpyCH4III ACNGT 1 cut(s) 472
HpyCH4IV ACGT 1 cut(s) 51
HpyCH4V TGCA 9 cut(s) 174, 183, 190, 261, 281, 315, 533, 600, 653
HpyF10VI GCNNNNNNNGC 3 cut(s) 180, 251, 437
HpyF3I CTNAG 2 cut(s) 502, 635
HpySE526I ACGT 1 cut(s) 51
Hsp92II CATG 1 cut(s) 281
KspAI GTTAAC 1 cut(s) 49
Kzo9I GATC 2 cut(s) 68, 76
LmnI GCTCC 2 cut(s) 343, 511
LpnPI CCDG 7 cut(s) 24, 93, 351, 562, 606, 610, 633
Lsp1109I GCAGC 1 cut(s) 273
LweI GCATC 1 cut(s) 685
MaeI CTAG 7 cut(s) 33, 60, 210, 342, 507, 569, 573
MaeII ACGT 1 cut(s) 51
MaeIII GTNAC 1 cut(s) 268
MalI GATC 2 cut(s) 70, 78
MboI GATC 2 cut(s) 68, 76
MboII GAAGA 3 cut(s) 139, 142, 469
MflI RGATCY 1 cut(s) 68
MlsI TGGCCA 1 cut(s) 222
MluCI AATT 5 cut(s) 119, 175, 185, 255, 298
MluNI TGGCCA 1 cut(s) 222
MmeI TCCRAC 1 cut(s) 140
MnlI CCTC 8 cut(s) 5, 30, 146, 156, 285, 363, 453, 520
Mox20I TGGCCA 1 cut(s) 222
Mph1103I ATGCAT 1 cut(s) 283
MscI TGGCCA 1 cut(s) 222
MseI TTAA 1 cut(s) 48
MslI CAYNNNNRTG 1 cut(s) 112
Msp20I TGGCCA 1 cut(s) 222
MspA1I CMGCKG 1 cut(s) 245
MspI CCGG 1 cut(s) 549
MspR9I CCNGG 1 cut(s) 621
Mva1269I GAATGC 2 cut(s) 317, 600
MvaI CCWGG 1 cut(s) 621
MwoI GCNNNNNNNGC 3 cut(s) 180, 251, 437
NdeII GATC 2 cut(s) 68, 76
NlaIII CATG 1 cut(s) 281
NlaIV GGNNCC 1 cut(s) 418
NsiI ATGCAT 1 cut(s) 283
OliI CACNNNNGTG 1 cut(s) 112
PceI AGGCCT 1 cut(s) 491
PctI GAATGC 2 cut(s) 317, 600
PinAI ACCGGT 1 cut(s) 548
PkrI GCNGC 1 cut(s) 263
Psp6I CCWGG 1 cut(s) 619
PspFI CCCAGC 1 cut(s) 38
PspGI CCWGG 1 cut(s) 619
PspN4I GGNNCC 1 cut(s) 418
PspPI GGNCC 1 cut(s) 639
PsuI RGATCY 1 cut(s) 68
RsaI GTAC 1 cut(s) 542
RsaNI GTAC 1 cut(s) 541
RseI CAYNNNNRTG 1 cut(s) 112
SaqAI TTAA 1 cut(s) 48
SatI GCNGC 1 cut(s) 262
Sau3AI GATC 2 cut(s) 68, 76
Sau96I GGNCC 1 cut(s) 639
ScrFI CCNGG 1 cut(s) 621
SfaNI GCATC 1 cut(s) 685
SgrAI CRCCGGYG 1 cut(s) 548
SinI GGWCC 1 cut(s) 639
SmiMI CAYNNNNRTG 1 cut(s) 112
Sse9I AATT 5 cut(s) 119, 175, 185, 255, 298
SseBI AGGCCT 1 cut(s) 491
SsiI CCGC 2 cut(s) 245, 387
SspI AATATT 1 cut(s) 670
SspMI CTAG 7 cut(s) 33, 60, 210, 342, 507, 569, 573
StuI AGGCCT 1 cut(s) 491
StyD4I CCNGG 1 cut(s) 619
TaaI ACNGT 1 cut(s) 472
TaiI ACGT 1 cut(s) 54
TasI AATT 5 cut(s) 119, 175, 185, 255, 298
TatI WGTACW 1 cut(s) 540
Tru1I TTAA 1 cut(s) 48
Tru9I TTAA 1 cut(s) 48
TscAI CASTG 2 cut(s) 13, 176
TseI GCWGC 1 cut(s) 261
TspDTI ATGAA 1 cut(s) 344
TspRI CASTG 2 cut(s) 13, 176
VpaK11BI GGWCC 1 cut(s) 639
XapI RAATTY 1 cut(s) 119
XspI CTAG 7 cut(s) 33, 60, 210, 342, 507, 569, 573
Zsp2I ATGCAT 1 cut(s) 283
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.