RLG00000005266

Protein of unknown function (DUF 659)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000421
Physical Location & Seq
Reverse (-)
66347129 .. 66350005
2877 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005266

Sequence Viewer

Length: 633 bp
ATGAACCTCTTCCAAATTCAAGTGGTGGAAGTCCAACATCATGAAGAAGACGATATAAACTCGAGGCCGGACTATCAGTTTCACCCAACAAGGGAGCGTAGATGCCCAACATCAGGTGAAGGAAGCTCAAGGCCAAACTATCAGTTTCATCCAACAAGGGAGAAGATCACCAAGATCATACCTTCAATCAAGGAGCTTGACAACGCAGGCTTGACACAAGATCAGGAAGATCACAATTTTCACGCAATCAAAGCTGAAACTTCTTCTTCGTATCGTATCTTCTTCTACTACAGACTTCTCCCAAAGGAAACCAGCTGGAGCTTCTTCTTTCGCTTCGGGACCCTGAGTGGAGATAGAACACCTTATATTAGTTCAAGTGCCGGGTATGTTAATGCCGATACTAGTAGTGGAGTTGCTGATCCTGAAAATATAGTGCAAGATGATAAGGCACCGTTGTGGAAATTTGTGAAGAAGATTCAGAAACAGCAAGGTGGAGGATGTTGGAGGTGGCAGTGCAATTTCTTCAAATTGTACTACAACAGTTCTTATACTAGAGTTCGTAGTCATTTGTTGAAAGAAGGAACAGCGGGAGTAGCAATTTGCAACAAGGTTACTCCTCATGCCTTTACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659

Protein Analysis

211

Amino Acids

24.3

Weight (kDa)

8.61

Isoelectric Point (pI)

36.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000421)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G08267
fragaria_vesca FvH4_2g14331 FvH4_2g16371 FvH4_2g26163 FvH4_3g42540 FvH4_4g02102 FvH4_4g12491 FvH4_4g35171 FvH4_5g06632 FvH4_5g06632 FvH4_5g06632 FvH4_5g08811 FvH4_5g08812 FvH4_5g23531 FvH4_6g10272 FvH4_6g40844 FvH4_7g16803 FvH4_7g16804
malus_domestica MD11G1099500.v1.1 MD17G1176800.v1.1
pyrus_communis pycom05g07840 pycom06g08730 pycom07g12010 pycom07g12020 pycom10g07270 pycom11g17470 pycom12g10610 pycom12g14240 pycom13g22040 pycom15g02440
rosa_chinensis RchiOBHm_Chr1g0371321 RchiOBHm_Chr2g0102701 RchiOBHm_Chr3g0465681 RchiOBHm_Chr4g0420941 RchiOBHm_Chr4g0434271 RchiOBHm_Chr4g0442721 RchiOBHm_Chr6g0262081 RchiOBHm_Chr6g0278171 RchiOBHm_Chr6g0294991 RchiOBHm_Chr6g0295001 RchiOBHm_Chr7g0205361 RchiOBHm_Chr7g0205371 RchiOBHm_Chr7g0223471
rosa_laevigata RLG00000005266
rosa_multiflora Rmu_sc0000493.1_g000033 Rmu_sc0000493.1_g000034 Rmu_sc0000507.1_g000007 Rmu_sc0000843.1_g000001 Rmu_sc0001075.1_g000033 Rmu_sc0002077.1_g000007 Rmu_sc0002077.1_g000008 Rmu_sc0002329.1_g000029 Rmu_sc0002539.1_g000077 Rmu_sc0002655.1_g000006 Rmu_sc0003127.1_g000020 Rmu_sc0003765.1_g000054 Rmu_sc0004368.1_g000023 Rmu_sc0004753.1_g000022 Rmu_sc0005297.1_g000014 Rmu_sc0007633.1_g000010 Rmu_sc0008164.1_g000005 Rmu_sc0008191.1_g000003 Rmu_sc0017900.1_g000005 Rmu_sc0022727.1_g000002
rosa_roxburghii Rroxscaffold_2G00079920 Rroxscaffold_3G00255890 Rroxscaffold_4G00295340 Rroxscaffold_4G00296360 Rroxscaffold_4G00299640 Rroxscaffold_6G00388210
rosa_rugosa Rorug02G0466700 Rorug04G0123200 Rorug05G0074800 Rorug07G0202900
rosa_samantha Rh1DG134700 Rh3CG159000 Rh4AG331000 Rh5AG521100 Rh5BG136400 Rh5DG127300 Rh5DG383100 Rh5DG386100 Rh5DG458000 Rh6CG450400 Rh7CG233800 Rh7DG407100
rosa_wichuraiana Rw1G004960 Rw1G005730 Rw1G006360 Rw1G017400 Rw2G013190 Rw2G022210 Rw2G029640 Rw5G020910 Rw5G036930 Rw6G016200 Rw7G018170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 448
AciI CCGC 1 cut(s) 587
AclWI GGATC 1 cut(s) 413
AcsI RAATTY 2 cut(s) 15, 461
AfaI GTAC 1 cut(s) 533
AfiI CCNNNNNNNGG 2 cut(s) 91, 113
AgsI TTSAA 5 cut(s) 20, 186, 375, 526, 574
AhlI ACTAGT 1 cut(s) 401
AleI CACNNNNGTG 1 cut(s) 454
AluBI AGCT 5 cut(s) 126, 196, 254, 315, 321
AluI AGCT 5 cut(s) 126, 196, 254, 315, 321
AlwI GGATC 1 cut(s) 413
Ama87I CYCGRG 1 cut(s) 61
AoxI GGCC 2 cut(s) 65, 131
ApoI RAATTY 2 cut(s) 15, 461
Asp700I GAANNNNTTC 1 cut(s) 8
AspS9I GGNCC 1 cut(s) 339
AsuC2I CCSGG 1 cut(s) 382
AsuHPI GGTGA 3 cut(s) 74, 128, 160
AvaI CYCGRG 1 cut(s) 61
AvaII GGWCC 1 cut(s) 339
BanI GGYRCC 1 cut(s) 448
BarI GAAGNNNNNNTAC 2 cut(s) 263, 295
BbsI GAAGAC 1 cut(s) 54
BcnI CCSGG 1 cut(s) 382
BcuI ACTAGT 1 cut(s) 401
BfaI CTAG 2 cut(s) 402, 552
BfmI CTRYAG 1 cut(s) 289
Bme1390I CCNGG 1 cut(s) 382
Bme18I GGWCC 1 cut(s) 339
BmeT110I CYCGRG 1 cut(s) 61
BmgT120I GGNCC 1 cut(s) 339
BmiI GGNNCC 3 cut(s) 340, 341, 450
BmrFI CCNGG 1 cut(s) 382
BmsI GCATC 1 cut(s) 92
BpiI GAAGAC 1 cut(s) 54
BpmI CTGGAG 1 cut(s) 337
BpuEI CTTGAG 1 cut(s) 112
BpuMI CCSGG 1 cut(s) 382
Bsc4I CCNNNNNNNGG 2 cut(s) 91, 113
BseGI GGATG 2 cut(s) 148, 503
BseLI CCNNNNNNNGG 2 cut(s) 91, 113
BseMII CTCAG 1 cut(s) 335
BseRI GAGGAG 1 cut(s) 606
BshFI GGCC 2 cut(s) 67, 133
BshNI GGYRCC 1 cut(s) 448
BsiHKCI CYCGRG 1 cut(s) 61
BsiSI CCGG 2 cut(s) 68, 381
BslFI GGGAC 1 cut(s) 352
BslI CCNNNNNNNGG 2 cut(s) 91, 113
BsmFI GGGAC 1 cut(s) 352
BsnI GGCC 2 cut(s) 67, 133
BsoBI CYCGRG 1 cut(s) 61
Bsp143I GATC 5 cut(s) 165, 174, 220, 229, 418
BspACI CCGC 1 cut(s) 587
BspANI GGCC 2 cut(s) 67, 133
BspCNI CTCAG 1 cut(s) 336
BspHI TCATGA 1 cut(s) 40
BspLI GGNNCC 3 cut(s) 340, 341, 450
BspPI GGATC 1 cut(s) 413
BspT107I GGYRCC 1 cut(s) 448
BssMI GATC 5 cut(s) 165, 174, 220, 229, 418
Bst4CI ACNGT 2 cut(s) 453, 542
Bst6I CTCTTC 1 cut(s) 14
BstC8I GCNNGC 1 cut(s) 208
BstDEI CTNAG 2 cut(s) 344, 630
BstF5I GGATG 2 cut(s) 148, 503
BstKTI GATC 5 cut(s) 168, 177, 223, 232, 421
BstMBI GATC 5 cut(s) 165, 174, 220, 229, 418
BstMWI GCNNNNNNNGC 2 cut(s) 251, 593
BstSCI CCNGG 1 cut(s) 380
BstSFI CTRYAG 1 cut(s) 289
BstV2I GAAGAC 1 cut(s) 54
BsuRI GGCC 2 cut(s) 67, 133
BtsCI GGATG 2 cut(s) 148, 503
BtsI GCAGTG 1 cut(s) 518
BtsIMutI CAGTG 1 cut(s) 518
Cac8I GCNNGC 1 cut(s) 208
CciI TCATGA 1 cut(s) 40
Cfr13I GGNCC 1 cut(s) 339
Csp6I GTAC 1 cut(s) 532
CviAII CATG 2 cut(s) 41, 620
CviJI RGCY 8 cut(s) 67, 126, 133, 196, 210, 254, 315, 321
CviKI_1 RGCY 8 cut(s) 67, 126, 133, 196, 210, 254, 315, 321
CviQI GTAC 1 cut(s) 532
DdeI CTNAG 2 cut(s) 344, 630
DpnI GATC 5 cut(s) 167, 176, 222, 231, 420
DpnII GATC 5 cut(s) 165, 174, 220, 229, 418
Eam1104I CTCTTC 1 cut(s) 14
EarI CTCTTC 1 cut(s) 14
Eco47I GGWCC 1 cut(s) 339
Eco88I CYCGRG 1 cut(s) 61
EcoO109I RGGNCCY 1 cut(s) 339
FaeI CATG 2 cut(s) 44, 623
FaiI YATR 8 cut(s) 42, 56, 179, 366, 387, 431, 549, 621
FaqI GGGAC 1 cut(s) 352
FatI CATG 2 cut(s) 40, 619
FauI CCCGC 1 cut(s) 580
FokI GGATG 2 cut(s) 135, 510
FspBI CTAG 2 cut(s) 402, 552
GsuI CTGGAG 1 cut(s) 337
HaeIII GGCC 2 cut(s) 67, 133
HapII CCGG 2 cut(s) 68, 381
Hin1II CATG 2 cut(s) 44, 623
HinfI GANTC 1 cut(s) 475
HpaII CCGG 2 cut(s) 68, 381
HphI GGTGA 3 cut(s) 74, 128, 160
Hpy188I TCNGA 1 cut(s) 480
Hpy188III TCNNGA 4 cut(s) 41, 224, 337, 422
HpyAV CCTTC 3 cut(s) 113, 192, 572
HpyCH4III ACNGT 2 cut(s) 453, 542
HpyCH4V TGCA 3 cut(s) 436, 516, 603
HpyF10VI GCNNNNNNNGC 2 cut(s) 251, 593
HpyF3I CTNAG 2 cut(s) 344, 630
Hsp92II CATG 2 cut(s) 44, 623
KflI GGGWCCC 1 cut(s) 339
Kzo9I GATC 5 cut(s) 165, 174, 220, 229, 418
LmnI GCTCC 3 cut(s) 94, 193, 318
LpnPI CCDG 9 cut(s) 81, 99, 192, 209, 301, 325, 356, 394, 435
LweI GCATC 1 cut(s) 92
MaeI CTAG 2 cut(s) 402, 552
MaeIII GTNAC 1 cut(s) 610
MalI GATC 5 cut(s) 167, 176, 222, 231, 420
MboI GATC 5 cut(s) 165, 174, 220, 229, 418
MluCI AATT 6 cut(s) 15, 235, 461, 517, 527, 597
MmeI TCCRAC 3 cut(s) 58, 176, 482
MnlI CCTC 5 cut(s) 17, 57, 488, 498, 627
MroXI GAANNNNTTC 1 cut(s) 8
MseI TTAA 1 cut(s) 390
MslI CAYNNNNRTG 1 cut(s) 454
MspA1I CMGCKG 2 cut(s) 315, 587
MspI CCGG 2 cut(s) 68, 381
MspR9I CCNGG 1 cut(s) 382
MwoI GCNNNNNNNGC 2 cut(s) 251, 593
NciI CCSGG 1 cut(s) 382
NdeII GATC 5 cut(s) 165, 174, 220, 229, 418
NlaIII CATG 2 cut(s) 44, 623
NlaIV GGNNCC 3 cut(s) 340, 341, 450
OliI CACNNNNGTG 1 cut(s) 454
PaeR7I CTCGAG 1 cut(s) 61
PagI TCATGA 1 cut(s) 40
PdmI GAANNNNTTC 1 cut(s) 8
PfeI GAWTC 1 cut(s) 475
PpuMI RGGWCCY 1 cut(s) 339
Psp5II RGGWCCY 1 cut(s) 339
PspN4I GGNNCC 3 cut(s) 340, 341, 450
PspPI GGNCC 1 cut(s) 339
PspPPI RGGWCCY 1 cut(s) 339
PspXI VCTCGAGB 1 cut(s) 61
PvuII CAGCTG 1 cut(s) 315
RsaI GTAC 1 cut(s) 533
RsaNI GTAC 1 cut(s) 532
RseI CAYNNNNRTG 1 cut(s) 454
SaqAI TTAA 1 cut(s) 390
Sau3AI GATC 5 cut(s) 165, 174, 220, 229, 418
Sau96I GGNCC 1 cut(s) 339
ScrFI CCNGG 1 cut(s) 382
SfaNI GCATC 1 cut(s) 92
SfcI CTRYAG 1 cut(s) 289
Sfr274I CTCGAG 1 cut(s) 61
SinI GGWCC 1 cut(s) 339
SlaI CTCGAG 1 cut(s) 61
SmiMI CAYNNNNRTG 1 cut(s) 454
SmlI CTYRAG 2 cut(s) 61, 127
SmoI CTYRAG 2 cut(s) 61, 127
SpeI ACTAGT 1 cut(s) 401
Sse9I AATT 6 cut(s) 15, 235, 461, 517, 527, 597
SsiI CCGC 1 cut(s) 587
SspMI CTAG 2 cut(s) 402, 552
StyD4I CCNGG 1 cut(s) 380
TaaI ACNGT 2 cut(s) 453, 542
TaqI TCGA 1 cut(s) 62
TasI AATT 6 cut(s) 15, 235, 461, 517, 527, 597
TatI WGTACW 1 cut(s) 531
TfiI GAWTC 1 cut(s) 475
Tru1I TTAA 1 cut(s) 390
Tru9I TTAA 1 cut(s) 390
TscAI CASTG 1 cut(s) 518
TspDTI ATGAA 3 cut(s) 17, 57, 137
TspRI CASTG 1 cut(s) 518
VpaK11BI GGWCC 1 cut(s) 339
XapI RAATTY 2 cut(s) 15, 461
XhoI CTCGAG 1 cut(s) 61
XmnI GAANNNNTTC 1 cut(s) 8
XspI CTAG 2 cut(s) 402, 552
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.