Rmu_sc0003765.1_g000054

Protein of unknown function (DUF 659)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003765.1
OG0000421
Physical Location & Seq
Reverse (-)
187509 .. 187907
399 bp
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UTR
Exon/CDS
Intron
Rmu_sc0003765.1_g000054.1.cds

Sequence Viewer

Length: 399 bp
atgttgaagaggtttaggcaaatcaaaaatggtttgcaacagatggtcatcagtccaaagtgggatgattacaaagaagattatgttaggaaggcaacttttgtgaaagataaattattagatgagttgttgtgggatgacattgattacatcatttcttttactgagcctatctatgagatgattaggaaagcagacactgataggtcttctcttcatttggtgtatgaatggtgggatatgattgagcaagtgaagaaggtaatctataggaaagaaaggaagcaacttcatcaagagtctctattttgggatgcggtgcataagattttaatggctggttggtctaaaagcaatacttccctccattgcttggcacattcattgaatctcaagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659

Protein Analysis

132

Amino Acids

16.06

Weight (kDa)

8.58

Isoelectric Point (pI)

34.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000421)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G08267
fragaria_vesca FvH4_2g14331 FvH4_2g16371 FvH4_2g26163 FvH4_3g42540 FvH4_4g02102 FvH4_4g12491 FvH4_4g35171 FvH4_5g06632 FvH4_5g06632 FvH4_5g06632 FvH4_5g08811 FvH4_5g08812 FvH4_5g23531 FvH4_6g10272 FvH4_6g40844 FvH4_7g16803 FvH4_7g16804
malus_domestica MD11G1099500.v1.1 MD17G1176800.v1.1
pyrus_communis pycom05g07840 pycom06g08730 pycom07g12010 pycom07g12020 pycom10g07270 pycom11g17470 pycom12g10610 pycom12g14240 pycom13g22040 pycom15g02440
rosa_chinensis RchiOBHm_Chr1g0371321 RchiOBHm_Chr2g0102701 RchiOBHm_Chr3g0465681 RchiOBHm_Chr4g0420941 RchiOBHm_Chr4g0434271 RchiOBHm_Chr4g0442721 RchiOBHm_Chr6g0262081 RchiOBHm_Chr6g0278171 RchiOBHm_Chr6g0294991 RchiOBHm_Chr6g0295001 RchiOBHm_Chr7g0205361 RchiOBHm_Chr7g0205371 RchiOBHm_Chr7g0223471
rosa_laevigata RLG00000005266
rosa_multiflora Rmu_sc0000493.1_g000033 Rmu_sc0000493.1_g000034 Rmu_sc0000507.1_g000007 Rmu_sc0000843.1_g000001 Rmu_sc0001075.1_g000033 Rmu_sc0002077.1_g000007 Rmu_sc0002077.1_g000008 Rmu_sc0002329.1_g000029 Rmu_sc0002539.1_g000077 Rmu_sc0002655.1_g000006 Rmu_sc0003127.1_g000020 Rmu_sc0003765.1_g000054 Rmu_sc0004368.1_g000023 Rmu_sc0004753.1_g000022 Rmu_sc0005297.1_g000014 Rmu_sc0007633.1_g000010 Rmu_sc0008164.1_g000005 Rmu_sc0008191.1_g000003 Rmu_sc0017900.1_g000005 Rmu_sc0022727.1_g000002
rosa_roxburghii Rroxscaffold_2G00079920 Rroxscaffold_3G00255890 Rroxscaffold_4G00295340 Rroxscaffold_4G00296360 Rroxscaffold_4G00299640 Rroxscaffold_6G00388210
rosa_rugosa Rorug02G0466700 Rorug04G0123200 Rorug05G0074800 Rorug07G0202900
rosa_samantha Rh1DG134700 Rh3CG159000 Rh4AG331000 Rh5AG521100 Rh5BG136400 Rh5DG127300 Rh5DG383100 Rh5DG386100 Rh5DG458000 Rh6CG450400 Rh7CG233800 Rh7DG407100
rosa_wichuraiana Rw1G004960 Rw1G005730 Rw1G006360 Rw1G017400 Rw2G013190 Rw2G022210 Rw2G029640 Rw5G020910 Rw5G036930 Rw6G016200 Rw7G018170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 373
AciI CCGC 1 cut(s) 317
AfiI CCNNNNNNNGG 1 cut(s) 373
AgsI TTSAA 2 cut(s) 7, 388
Alw26I GTCTC 1 cut(s) 306
AlwNI CAGNNNCTG 1 cut(s) 200
BbsI GAAGAC 1 cut(s) 201
BccI CCATC 1 cut(s) 37
BcoDI GTCTC 1 cut(s) 306
BfmI CTRYAG 1 cut(s) 268
BmsI GCATC 1 cut(s) 304
BpiI GAAGAC 1 cut(s) 201
BpuEI CTTGAG 1 cut(s) 377
BsaBI GATNNNNATC 1 cut(s) 47
Bsc4I CCNNNNNNNGG 1 cut(s) 373
Bse3DI GCAATG 1 cut(s) 367
Bse8I GATNNNNATC 1 cut(s) 47
BseGI GGATG 3 cut(s) 70, 142, 319
BseJI GATNNNNATC 1 cut(s) 47
BseLI CCNNNNNNNGG 1 cut(s) 373
BseMI GCAATG 1 cut(s) 367
BseMII CTCAG 1 cut(s) 156
BslI CCNNNNNNNGG 1 cut(s) 373
BsmAI GTCTC 1 cut(s) 306
BspACI CCGC 1 cut(s) 317
BspCNI CTCAG 1 cut(s) 157
BsrDI GCAATG 1 cut(s) 367
Bst6I CTCTTC 2 cut(s) 2, 219
BstDEI CTNAG 1 cut(s) 165
BstF5I GGATG 3 cut(s) 70, 142, 319
BstMAI GTCTC 1 cut(s) 306
BstSFI CTRYAG 1 cut(s) 268
BstV2I GAAGAC 1 cut(s) 201
BtsCI GGATG 3 cut(s) 70, 142, 319
BtsIMutI CAGTG 1 cut(s) 198
CaiI CAGNNNCTG 1 cut(s) 200
CviJI RGCY 2 cut(s) 169, 338
CviKI_1 RGCY 2 cut(s) 169, 338
DdeI CTNAG 1 cut(s) 165
Eam1104I CTCTTC 2 cut(s) 2, 219
EarI CTCTTC 2 cut(s) 2, 219
FaiI YATR 6 cut(s) 84, 177, 228, 242, 270, 324
FalI AAGNNNNNCTT 2 cut(s) 343, 375
FokI GGATG 3 cut(s) 77, 149, 326
HinfI GANTC 2 cut(s) 299, 388
Hpy188III TCNNGA 1 cut(s) 296
HpyAV CCTTC 2 cut(s) 85, 253
HpyCH4V TGCA 2 cut(s) 37, 322
HpyF3I CTNAG 1 cut(s) 165
LpnPI CCDG 1 cut(s) 324
LweI GCATC 1 cut(s) 304
MboII GAAGA 5 cut(s) 19, 89, 201, 206, 268
MluCI AATT 1 cut(s) 113
MlyI GAGTC 1 cut(s) 308
MnlI CCTC 2 cut(s) 3, 374
MseI TTAA 1 cut(s) 332
PfeI GAWTC 1 cut(s) 388
PflMI CCANNNNNTGG 1 cut(s) 373
PleI GAGTC 1 cut(s) 307
PpsI GAGTC 1 cut(s) 307
PstNI CAGNNNCTG 1 cut(s) 200
SaqAI TTAA 1 cut(s) 332
SchI GAGTC 1 cut(s) 308
SetI ASST 3 cut(s) 14, 209, 264
SfaNI GCATC 1 cut(s) 304
SfcI CTRYAG 1 cut(s) 268
SgeI CNNG 4 cut(s) 263, 308, 351, 385
SmlI CTYRAG 1 cut(s) 392
SmoI CTYRAG 1 cut(s) 392
Sse9I AATT 1 cut(s) 113
SsiI CCGC 1 cut(s) 317
TasI AATT 1 cut(s) 113
TfiI GAWTC 1 cut(s) 388
Tru1I TTAA 1 cut(s) 332
Tru9I TTAA 1 cut(s) 332
TscAI CASTG 1 cut(s) 205
TspDTI ATGAA 4 cut(s) 206, 243, 281, 372
TspRI CASTG 1 cut(s) 205
Van91I CCANNNNNTGG 1 cut(s) 373
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.