RchiOBHm_Chr6g0295001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000421
Physical Location & Seq
Forward (+)
57152846 .. 57154351
1506 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ26476

Sequence Viewer

Length: 1128 bp
ATGTTCATCAAGAACTTCATTATGAATCATGGAATGAGATTAGTCATGTTTAATGACCATTGCAATTTGAAGTTGCTTTCGGTTGCTCCCACAAGGTTTGCATCAACGTTAATCATGCTAAAGAGGTTTAGGAAAATTAAAAATGGTTTGCAACAGATGGTCATCAGTCCAAAGTGGGCTGATTACAAAGAAGATGATGTTAGGAAGGCAGCTTCTGTGAAGGAGAAATTATTAGATGAGTTGCTATGGGATGACATTGATTACATCATTTCTTTTACTGAGCCTATCTATGAGATGCTCAGGAAAGCAGACACTGATAGGCCTTCTCTTCATTTAGTGTATGAATGGTGGGATAGTATGATTGAGCAAGTGAAGAAGGCTATCTATAGGAAAGAAAGGAAGCAACCTCATGAAGAGTCTCCATTTTGGGATGCAGTGTATAAGGTTCTAATGGCTCGTTGGTCCAAGAGCAATACTTCTCTCAATTGCTTGGCACATTCATTGAATCCGAAGTATTATAGTTCGGAATGGCTTAGTGAAGATACTAATCGGGTTGCTCCCCACAAAGATTTAGAGATTACAAGGGAGAGGAAAAATTGTATCCTTAGATACTTTGCCAATGAAGATGATCGAAGGAAAGTTAACATAGAATTTGCTAATTTTTCTATGTGTATGCAAGAGTTTGGAAGTGGAGATGCTATGAAGGATAGGTTTATTATGGAGCCTATAACATGGTGGGCTGTCCATGGAGCTTCGGCTCCATCTCTCCAAGCCATAGCCTTCAAGGTTCTAGGTCAACCTTGTTCTTCTTCATGTTGTGAAAGAAATTGGAGTACTTACAATTTCATTCACTCTGTGAGGAGGAACAAGATAACACCACAACGAGCGGAAGATTTGGTGTTTGTGCATACCAATCTTCGCCTTTTAGCTAGGAGAAGCCCAAGTTACAATGAAAGTGCAACTCAAATGTGGGATGTTGGAGGTGATGAGTTTGATTCTTTAGAAGAGTCTAATGTTGGAAGGCTTGAGATTGCTAACCTTTCACTTGATGAACCACAATTAGAGAGGGTTTTGTTTAATGTTGATGATGAAGATGAAGACCTTGAGGATGTTGTCCAAGTTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT

Protein Analysis

375

Amino Acids

44.05

Weight (kDa)

5.62

Isoelectric Point (pI)

42.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dimer_Tnp_hAT PF05699 239 - 306 2.2e-12 hAT family C-terminal dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000421)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G08267
fragaria_vesca FvH4_2g14331 FvH4_2g16371 FvH4_2g26163 FvH4_3g42540 FvH4_4g02102 FvH4_4g12491 FvH4_4g35171 FvH4_5g06632 FvH4_5g06632 FvH4_5g06632 FvH4_5g08811 FvH4_5g08812 FvH4_5g23531 FvH4_6g10272 FvH4_6g40844 FvH4_7g16803 FvH4_7g16804
malus_domestica MD11G1099500.v1.1 MD17G1176800.v1.1
pyrus_communis pycom05g07840 pycom06g08730 pycom07g12010 pycom07g12020 pycom10g07270 pycom11g17470 pycom12g10610 pycom12g14240 pycom13g22040 pycom15g02440
rosa_chinensis RchiOBHm_Chr1g0371321 RchiOBHm_Chr2g0102701 RchiOBHm_Chr3g0465681 RchiOBHm_Chr4g0420941 RchiOBHm_Chr4g0434271 RchiOBHm_Chr4g0442721 RchiOBHm_Chr6g0262081 RchiOBHm_Chr6g0278171 RchiOBHm_Chr6g0294991 RchiOBHm_Chr6g0295001 RchiOBHm_Chr7g0205361 RchiOBHm_Chr7g0205371 RchiOBHm_Chr7g0223471
rosa_laevigata RLG00000005266
rosa_multiflora Rmu_sc0000493.1_g000033 Rmu_sc0000493.1_g000034 Rmu_sc0000507.1_g000007 Rmu_sc0000843.1_g000001 Rmu_sc0001075.1_g000033 Rmu_sc0002077.1_g000007 Rmu_sc0002077.1_g000008 Rmu_sc0002329.1_g000029 Rmu_sc0002539.1_g000077 Rmu_sc0002655.1_g000006 Rmu_sc0003127.1_g000020 Rmu_sc0003765.1_g000054 Rmu_sc0004368.1_g000023 Rmu_sc0004753.1_g000022 Rmu_sc0005297.1_g000014 Rmu_sc0007633.1_g000010 Rmu_sc0008164.1_g000005 Rmu_sc0008191.1_g000003 Rmu_sc0017900.1_g000005 Rmu_sc0022727.1_g000002
rosa_roxburghii Rroxscaffold_2G00079920 Rroxscaffold_3G00255890 Rroxscaffold_4G00295340 Rroxscaffold_4G00296360 Rroxscaffold_4G00299640 Rroxscaffold_6G00388210
rosa_rugosa Rorug02G0466700 Rorug04G0123200 Rorug05G0074800 Rorug07G0202900
rosa_samantha Rh1DG134700 Rh3CG159000 Rh4AG331000 Rh5AG521100 Rh5BG136400 Rh5DG127300 Rh5DG383100 Rh5DG386100 Rh5DG458000 Rh6CG450400 Rh7CG233800 Rh7DG407100
rosa_wichuraiana Rw1G004960 Rw1G005730 Rw1G006360 Rw1G017400 Rw2G013190 Rw2G022210 Rw2G029640 Rw5G020910 Rw5G036930 Rw6G016200 Rw7G018170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 887
AciI CCGC 1 cut(s) 887
AclI AACGTT 1 cut(s) 107
AcsI RAATTY 1 cut(s) 650
AdeI CACNNNGTG 1 cut(s) 856
AfaI GTAC 1 cut(s) 835
AgsI TTSAA 4 cut(s) 70, 505, 784, 1124
AluBI AGCT 3 cut(s) 212, 752, 929
AluI AGCT 3 cut(s) 212, 752, 929
Alw26I GTCTC 1 cut(s) 423
AlwNI CAGNNNCTG 2 cut(s) 215, 314
AoxI GGCC 1 cut(s) 320
ApeKI GCWGC 1 cut(s) 209
ApoI RAATTY 1 cut(s) 650
AspS9I GGNCC 1 cut(s) 462
AsuHPI GGTGA 1 cut(s) 995
AvaII GGWCC 1 cut(s) 462
BbsI GAAGAC 1 cut(s) 1104
BbvI GCAGC 1 cut(s) 221
BccI CCATC 2 cut(s) 151, 769
BciVI GTATCC 1 cut(s) 611
BcoDI GTCTC 1 cut(s) 423
BfaI CTAG 2 cut(s) 791, 930
BfmI CTRYAG 1 cut(s) 385
BfuI GTATCC 1 cut(s) 611
BisI GCNGC 1 cut(s) 210
BlsI GCNGC 1 cut(s) 211
BmcAI AGTACT 1 cut(s) 835
Bme18I GGWCC 1 cut(s) 462
BmgT120I GGNCC 1 cut(s) 462
BmiI GGNNCC 2 cut(s) 723, 759
BmsI GCATC 4 cut(s) 110, 285, 421, 685
BpiI GAAGAC 1 cut(s) 1104
Bpu10I CCTNAGC 1 cut(s) 299
BpuEI CTTGAG 2 cut(s) 1046, 1124
BsaBI GATNNNNATC 2 cut(s) 161, 546
BsaJI CCNNGG 1 cut(s) 745
Bse3DI GCAATG 1 cut(s) 58
Bse8I GATNNNNATC 2 cut(s) 161, 546
BseDI CCNNGG 1 cut(s) 745
BseGI GGATG 4 cut(s) 256, 436, 979, 1114
BseJI GATNNNNATC 2 cut(s) 161, 546
BseMI GCAATG 1 cut(s) 58
BseMII CTCAG 2 cut(s) 270, 313
BseRI GAGGAG 1 cut(s) 874
BseXI GCAGC 1 cut(s) 221
BshFI GGCC 1 cut(s) 322
BsmAI GTCTC 1 cut(s) 423
BsnI GGCC 1 cut(s) 322
Bsp143I GATC 1 cut(s) 628
Bsp19I CCATGG 1 cut(s) 745
BspACI CCGC 1 cut(s) 887
BspANI GGCC 1 cut(s) 322
BspCNI CTCAG 2 cut(s) 271, 312
BspHI TCATGA 1 cut(s) 409
BspLI GGNNCC 2 cut(s) 723, 759
BsrBI CCGCTC 1 cut(s) 887
BsrDI GCAATG 1 cut(s) 58
BssECI CCNNGG 1 cut(s) 745
BssMI GATC 1 cut(s) 628
BssT1I CCWWGG 1 cut(s) 745
Bst6I CTCTTC 3 cut(s) 333, 408, 999
BstDEI CTNAG 4 cut(s) 279, 299, 533, 605
BstDSI CCRYGG 1 cut(s) 745
BstF5I GGATG 4 cut(s) 256, 436, 979, 1114
BstKTI GATC 1 cut(s) 631
BstMAI GTCTC 1 cut(s) 423
BstMBI GATC 1 cut(s) 628
BstSFI CTRYAG 1 cut(s) 385
BstV1I GCAGC 1 cut(s) 221
BstV2I GAAGAC 1 cut(s) 1104
BsuI GTATCC 1 cut(s) 611
BsuRI GGCC 1 cut(s) 322
BtgI CCRYGG 1 cut(s) 745
BtsCI GGATG 4 cut(s) 256, 436, 979, 1114
BtsI GCAGTG 1 cut(s) 441
BtsIMutI CAGTG 2 cut(s) 312, 441
CaiI CAGNNNCTG 2 cut(s) 215, 314
CciI TCATGA 1 cut(s) 409
Cfr13I GGNCC 1 cut(s) 462
Csp6I GTAC 1 cut(s) 834
CspCI CAANNNNNGTGG 2 cut(s) 79, 114
CviAII CATG 7 cut(s) 29, 46, 115, 410, 732, 746, 813
CviQI GTAC 1 cut(s) 834
DdeI CTNAG 4 cut(s) 279, 299, 533, 605
DpnI GATC 1 cut(s) 630
DpnII GATC 1 cut(s) 628
DraIII CACNNNGTG 1 cut(s) 856
Eam1104I CTCTTC 3 cut(s) 333, 408, 999
EarI CTCTTC 3 cut(s) 333, 408, 999
Eco130I CCWWGG 1 cut(s) 745
Eco147I AGGCCT 1 cut(s) 322
Eco47I GGWCC 1 cut(s) 462
EcoT14I CCWWGG 1 cut(s) 745
ErhI CCWWGG 1 cut(s) 745
FaeI CATG 7 cut(s) 32, 49, 118, 413, 735, 749, 816
FatI CATG 7 cut(s) 28, 45, 114, 409, 731, 745, 812
Fnu4HI GCNGC 1 cut(s) 210
FokI GGATG 4 cut(s) 263, 443, 986, 1121
Fsp4HI GCNGC 1 cut(s) 210
FspBI CTAG 2 cut(s) 791, 930
GluI GCNGC 1 cut(s) 210
HaeIII GGCC 1 cut(s) 322
Hin1II CATG 7 cut(s) 32, 49, 118, 413, 735, 749, 816
HincII GTYRAC 2 cut(s) 643, 797
HindII GTYRAC 2 cut(s) 643, 797
HinfI GANTC 5 cut(s) 25, 416, 505, 995, 1007
HpaI GTTAAC 1 cut(s) 643
HphI GGTGA 1 cut(s) 995
Hpy166II GTNNAC 2 cut(s) 643, 797
Hpy188I TCNGA 2 cut(s) 510, 526
Hpy188III TCNNGA 3 cut(s) 10, 301, 410
Hpy8I GTNNAC 2 cut(s) 643, 797
HpyAV CCTTC 8 cut(s) 199, 214, 333, 370, 627, 697, 790, 1014
HpyCH4IV ACGT 1 cut(s) 107
HpyCH4V TGCA 7 cut(s) 63, 101, 151, 434, 676, 907, 959
HpyF3I CTNAG 4 cut(s) 279, 299, 533, 605
HpySE526I ACGT 1 cut(s) 107
Hsp92II CATG 7 cut(s) 32, 49, 118, 413, 735, 749, 816
KspAI GTTAAC 1 cut(s) 643
Kzo9I GATC 1 cut(s) 628
LmnI GCTCC 5 cut(s) 91, 562, 721, 749, 763
LpnPI CCDG 1 cut(s) 286
Lsp1109I GCAGC 1 cut(s) 221
LweI GCATC 4 cut(s) 110, 285, 421, 685
MaeI CTAG 2 cut(s) 791, 930
MaeII ACGT 1 cut(s) 107
MaeIII GTNAC 1 cut(s) 944
MalI GATC 1 cut(s) 630
MbiI CCGCTC 1 cut(s) 887
MboI GATC 1 cut(s) 628
MfeI CAATTG 1 cut(s) 484
MlyI GAGTC 2 cut(s) 425, 1016
MmeI TCCRAC 2 cut(s) 958, 997
MnlI CCTC 8 cut(s) 117, 417, 582, 852, 855, 974, 1059, 1099
MseI TTAA 5 cut(s) 51, 110, 138, 642, 1077
MunI CAATTG 1 cut(s) 484
NcoI CCATGG 1 cut(s) 745
NdeII GATC 1 cut(s) 628
NlaIII CATG 7 cut(s) 32, 49, 118, 413, 735, 749, 816
NlaIV GGNNCC 2 cut(s) 723, 759
PagI TCATGA 1 cut(s) 409
PceI AGGCCT 1 cut(s) 322
PfeI GAWTC 3 cut(s) 25, 505, 995
PkrI GCNGC 1 cut(s) 211
PleI GAGTC 2 cut(s) 424, 1015
PpsI GAGTC 2 cut(s) 424, 1015
Psp1406I AACGTT 1 cut(s) 107
PspN4I GGNNCC 2 cut(s) 723, 759
PspPI GGNCC 1 cut(s) 462
PstNI CAGNNNCTG 2 cut(s) 215, 314
RsaI GTAC 1 cut(s) 835
RsaNI GTAC 1 cut(s) 834
SaqAI TTAA 5 cut(s) 51, 110, 138, 642, 1077
SatI GCNGC 1 cut(s) 210
Sau3AI GATC 1 cut(s) 628
Sau96I GGNCC 1 cut(s) 462
ScaI AGTACT 1 cut(s) 835
SchI GAGTC 2 cut(s) 425, 1016
SfaNI GCATC 4 cut(s) 110, 285, 421, 685
SfcI CTRYAG 1 cut(s) 385
SinI GGWCC 1 cut(s) 462
SmlI CTYRAG 2 cut(s) 1025, 1103
SmoI CTYRAG 2 cut(s) 1025, 1103
SseBI AGGCCT 1 cut(s) 322
SsiI CCGC 1 cut(s) 887
SspMI CTAG 2 cut(s) 791, 930
StuI AGGCCT 1 cut(s) 322
StyI CCWWGG 1 cut(s) 745
TaiI ACGT 1 cut(s) 110
TaqI TCGA 1 cut(s) 631
TatI WGTACW 1 cut(s) 833
TfiI GAWTC 3 cut(s) 25, 505, 995
Tru1I TTAA 5 cut(s) 51, 110, 138, 642, 1077
Tru9I TTAA 5 cut(s) 51, 110, 138, 642, 1077
TscAI CASTG 2 cut(s) 319, 441
TseI GCWGC 1 cut(s) 209
TspRI CASTG 2 cut(s) 319, 441
VpaK11BI GGWCC 1 cut(s) 462
XapI RAATTY 1 cut(s) 650
XspI CTAG 2 cut(s) 791, 930
ZrmI AGTACT 1 cut(s) 835
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.