pycom07g12020

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0000421
Physical Location & Seq
Forward (+)
13334940 .. 13336195
1256 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g12020.2

Sequence Viewer

Length: 1089 bp
ATGAACCATAGCATGAGATTGTCCATGTTTAATGAACATTGCAAACTAAAGTTACTTTCCATTGCCGAAACAAGATTTGCTTCCACACTTGTGATGCTTAGAAGATTTAAGGAAATAAAGGAAGGTTTACAACAAATGGTGATTAGCCCGAATTGGGCTTTGTACAAAGAAGATGATTTGGTTAAAGCAATGATGGTGAAGCAAAAGATATTGGATGAGGATTTTTGGGAGAAGATTGATTATATTTTTTTCTTTACAGCTCCAATATATGAGGTTATTAGAATGGCTGACACAGATAAACCTTGTCTTCACTTGGTGTATGAGTGGTGGGATGCTATGATTGAAAAGGTGAAAGCTGCTATATACAGGAATGAGCGCAAGGCATTACATGAAAAAAGCAGCTTTTTTCATGCGGTGTATCGTATTTTATTGGAGCGATGGACTAAAAGTAGCACACCACTTCATTGTTTGGCACATTCATTAAATCCAAGGTATTATAGTTCAGAATGGCTCCAAGAAGACCCTAGTCATCTTGCTCCACACCGAGATGTTGAACTTACAATTGAAAGGAAAAAGTGCTTTGAGAGATACTTTTCCAATGAGGAAATTAGAAGAAATATCAATGTGGAGTATGCCTCGTTCTCTATGTGCTTGAATGACTTTGGAGCTATTGATTCTATGAATGATAGATTTCATTTCGAACCAGTGATGTGGTGGATTGTCCATGGAGCTTCTACACCTAGTCTCCAATCCATAGCGTTGAAGCTACTTGGACAACCTTGTTCCTCCTCTTGTTGTGAAAGAAAGAGCACTTATAGTTTTATTCACTCTTTAAGAAGGAACAAGATTACACCACAAAGAGCTGAGGATTTGGTATTTGTGCATAATAATCTTTGTCTTTTATCAAGGAATAGCTCAACCTACAAGGAAGGTATTACTCAATTGTGGGATGTTGGAGGAGATGGCTTTGAAAACTTGGGTGAAGAAAGTGTCGGGATGCTTGAAATAGCTAACCTTTCACTTGATGAACCGTCATTGGAGACTACTTTAGTTACTGGAGAAGACATCACGAATGTGGAAGTTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT

Protein Analysis

363

Amino Acids

42.34

Weight (kDa)

5.77

Isoelectric Point (pI)

40.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000421)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G08267
fragaria_vesca FvH4_2g14331 FvH4_2g16371 FvH4_2g26163 FvH4_3g42540 FvH4_4g02102 FvH4_4g12491 FvH4_4g35171 FvH4_5g06632 FvH4_5g06632 FvH4_5g06632 FvH4_5g08811 FvH4_5g08812 FvH4_5g23531 FvH4_6g10272 FvH4_6g40844 FvH4_7g16803 FvH4_7g16804
malus_domestica MD11G1099500.v1.1 MD17G1176800.v1.1
pyrus_communis pycom05g07840 pycom06g08730 pycom07g12010 pycom07g12020 pycom10g07270 pycom11g17470 pycom12g10610 pycom12g14240 pycom13g22040 pycom15g02440
rosa_chinensis RchiOBHm_Chr1g0371321 RchiOBHm_Chr2g0102701 RchiOBHm_Chr3g0465681 RchiOBHm_Chr4g0420941 RchiOBHm_Chr4g0434271 RchiOBHm_Chr4g0442721 RchiOBHm_Chr6g0262081 RchiOBHm_Chr6g0278171 RchiOBHm_Chr6g0294991 RchiOBHm_Chr6g0295001 RchiOBHm_Chr7g0205361 RchiOBHm_Chr7g0205371 RchiOBHm_Chr7g0223471
rosa_laevigata RLG00000005266
rosa_multiflora Rmu_sc0000493.1_g000033 Rmu_sc0000493.1_g000034 Rmu_sc0000507.1_g000007 Rmu_sc0000843.1_g000001 Rmu_sc0001075.1_g000033 Rmu_sc0002077.1_g000007 Rmu_sc0002077.1_g000008 Rmu_sc0002329.1_g000029 Rmu_sc0002539.1_g000077 Rmu_sc0002655.1_g000006 Rmu_sc0003127.1_g000020 Rmu_sc0003765.1_g000054 Rmu_sc0004368.1_g000023 Rmu_sc0004753.1_g000022 Rmu_sc0005297.1_g000014 Rmu_sc0007633.1_g000010 Rmu_sc0008164.1_g000005 Rmu_sc0008191.1_g000003 Rmu_sc0017900.1_g000005 Rmu_sc0022727.1_g000002
rosa_roxburghii Rroxscaffold_2G00079920 Rroxscaffold_3G00255890 Rroxscaffold_4G00295340 Rroxscaffold_4G00296360 Rroxscaffold_4G00299640 Rroxscaffold_6G00388210
rosa_rugosa Rorug02G0466700 Rorug04G0123200 Rorug05G0074800 Rorug07G0202900
rosa_samantha Rh1DG134700 Rh3CG159000 Rh4AG331000 Rh5AG521100 Rh5BG136400 Rh5DG127300 Rh5DG383100 Rh5DG386100 Rh5DG458000 Rh6CG450400 Rh7CG233800 Rh7DG407100
rosa_wichuraiana Rw1G004960 Rw1G005730 Rw1G006360 Rw1G017400 Rw2G013190 Rw2G022210 Rw2G029640 Rw5G020910 Rw5G036930 Rw6G016200 Rw7G018170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 413
AdeI CACNNNGTG 1 cut(s) 316
AfaI GTAC 1 cut(s) 164
AfiI CCNNNNNNNGG 1 cut(s) 154
AgsI TTSAA 8 cut(s) 344, 554, 566, 655, 763, 971, 1004, 1085
AleI CACNNNNGTG 2 cut(s) 89, 1073
AluBI AGCT 9 cut(s) 260, 356, 402, 668, 731, 766, 863, 915, 1010
AluI AGCT 9 cut(s) 260, 356, 402, 668, 731, 766, 863, 915, 1010
Alw21I GWGCWC 1 cut(s) 812
Alw26I GTCTC 2 cut(s) 749, 1034
ApeKI GCWGC 2 cut(s) 356, 399
AspLEI GCGC 1 cut(s) 378
AsuHPI GGTGA 4 cut(s) 151, 208, 361, 992
AsuII TTCGAA 1 cut(s) 699
BbsI GAAGAC 3 cut(s) 299, 525, 1068
Bbv12I GWGCWC 1 cut(s) 812
BbvCI CCTCAGC 1 cut(s) 864
BbvI GCAGC 2 cut(s) 343, 411
BccI CCATC 3 cut(s) 187, 432, 956
BcoDI GTCTC 2 cut(s) 749, 1034
BfaI CTAG 2 cut(s) 525, 741
BisI GCNGC 2 cut(s) 357, 400
BlsI GCNGC 2 cut(s) 358, 401
BmiI GGNNCC 1 cut(s) 512
BmsI GCATC 3 cut(s) 84, 322, 987
BoxI GACNNNNGTC 1 cut(s) 525
BpiI GAAGAC 3 cut(s) 299, 525, 1068
BplI GAGNNNNNCTC 2 cut(s) 620, 652
BpmI CTGGAG 1 cut(s) 1077
Bpu10I CCTNAGC 1 cut(s) 864
Bpu14I TTCGAA 1 cut(s) 699
BsaJI CCNNGG 2 cut(s) 488, 724
BsaXI ACNNNNNCTCC 2 cut(s) 729, 759
Bsc4I CCNNNNNNNGG 1 cut(s) 154
Bse1I ACTGG 2 cut(s) 704, 1060
Bse3DI GCAATG 3 cut(s) 37, 60, 195
BseDI CCNNGG 2 cut(s) 488, 724
BseGI GGATG 4 cut(s) 220, 337, 955, 1002
BseLI CCNNNNNNNGG 1 cut(s) 154
BseMI GCAATG 3 cut(s) 37, 60, 195
BseMII CTCAG 1 cut(s) 855
BseNI ACTGG 2 cut(s) 704, 1060
BseRI GAGGAG 2 cut(s) 778, 972
BseXI GCAGC 2 cut(s) 343, 411
BsiHKAI GWGCWC 1 cut(s) 812
BslI CCNNNNNNNGG 1 cut(s) 154
BsmAI GTCTC 2 cut(s) 749, 1034
Bsp119I TTCGAA 1 cut(s) 699
Bsp1286I GDGCHC 1 cut(s) 812
Bsp1407I TGTACA 1 cut(s) 162
Bsp19I CCATGG 1 cut(s) 724
BspACI CCGC 1 cut(s) 413
BspCNI CTCAG 1 cut(s) 856
BspLI GGNNCC 1 cut(s) 512
BspT104I TTCGAA 1 cut(s) 699
BsrDI GCAATG 3 cut(s) 37, 60, 195
BsrGI TGTACA 1 cut(s) 162
BsrI ACTGG 2 cut(s) 704, 1060
BssECI CCNNGG 2 cut(s) 488, 724
BssT1I CCWWGG 2 cut(s) 488, 724
Bst4CI ACNGT 1 cut(s) 1032
BstAUI TGTACA 1 cut(s) 162
BstBI TTCGAA 1 cut(s) 699
BstDEI CTNAG 2 cut(s) 98, 864
BstDSI CCRYGG 1 cut(s) 724
BstF5I GGATG 4 cut(s) 220, 337, 955, 1002
BstHHI GCGC 1 cut(s) 378
BstMAI GTCTC 2 cut(s) 749, 1034
BstPAI GACNNNNGTC 1 cut(s) 525
BstV1I GCAGC 2 cut(s) 343, 411
BstV2I GAAGAC 3 cut(s) 299, 525, 1068
BstXI CCANNNNNNTGG 1 cut(s) 711
BtgI CCRYGG 1 cut(s) 724
BtgZI GCGATG 1 cut(s) 451
BtsCI GGATG 4 cut(s) 220, 337, 955, 1002
BtsIMutI CAGTG 1 cut(s) 711
CfoI GCGC 1 cut(s) 378
Csp6I GTAC 1 cut(s) 163
CviAII CATG 5 cut(s) 13, 25, 389, 410, 725
CviQI GTAC 1 cut(s) 163
DdeI CTNAG 2 cut(s) 98, 864
DraIII CACNNNGTG 1 cut(s) 316
Eco130I CCWWGG 2 cut(s) 488, 724
EcoT14I CCWWGG 2 cut(s) 488, 724
ErhI CCWWGG 2 cut(s) 488, 724
FaeI CATG 5 cut(s) 16, 28, 392, 413, 728
FalI AAGNNNNNCTT 2 cut(s) 64, 96
FatI CATG 5 cut(s) 12, 24, 388, 409, 724
Fnu4HI GCNGC 2 cut(s) 357, 400
FokI GGATG 4 cut(s) 227, 344, 962, 1009
Fsp4HI GCNGC 2 cut(s) 357, 400
FspBI CTAG 2 cut(s) 525, 741
GlaI GCGC 1 cut(s) 377
GluI GCNGC 2 cut(s) 357, 400
GsuI CTGGAG 1 cut(s) 1077
HhaI GCGC 1 cut(s) 378
Hin1II CATG 5 cut(s) 16, 28, 392, 413, 728
Hin6I GCGC 1 cut(s) 376
HinP1I GCGC 1 cut(s) 376
HinfI GANTC 1 cut(s) 674
HphI GGTGA 4 cut(s) 151, 208, 361, 992
Hpy166II GTNNAC 1 cut(s) 128
Hpy188I TCNGA 1 cut(s) 505
Hpy188III TCNNGA 2 cut(s) 994, 1069
Hpy8I GTNNAC 1 cut(s) 128
HpyAV CCTTC 3 cut(s) 116, 831, 923
HpyCH4III ACNGT 1 cut(s) 1032
HpyCH4V TGCA 2 cut(s) 42, 883
HpyF3I CTNAG 2 cut(s) 98, 864
Hsp92II CATG 5 cut(s) 16, 28, 392, 413, 728
HspAI GCGC 1 cut(s) 376
LmnI GCTCC 6 cut(s) 265, 433, 516, 541, 665, 728
LpnPI CCDG 3 cut(s) 352, 717, 1041
Lsp1109I GCAGC 2 cut(s) 343, 411
LweI GCATC 3 cut(s) 84, 322, 987
MaeI CTAG 2 cut(s) 525, 741
MaeIII GTNAC 2 cut(s) 51, 1051
MboII GAAGA 8 cut(s) 114, 182, 244, 299, 530, 624, 995, 1073
MfeI CAATTG 2 cut(s) 561, 941
MhlI GDGCHC 1 cut(s) 812
MluCI AATT 4 cut(s) 151, 561, 606, 941
MmeI TCCRAC 1 cut(s) 934
MnlI CCTC 8 cut(s) 211, 265, 595, 646, 796, 799, 859, 950
MseI TTAA 5 cut(s) 30, 108, 183, 482, 833
MslI CAYNNNNRTG 3 cut(s) 89, 546, 1073
MunI CAATTG 2 cut(s) 561, 941
NcoI CCATGG 1 cut(s) 724
NlaIII CATG 5 cut(s) 16, 28, 392, 413, 728
NlaIV GGNNCC 1 cut(s) 512
NspV TTCGAA 1 cut(s) 699
OliI CACNNNNGTG 2 cut(s) 89, 1073
PfeI GAWTC 1 cut(s) 674
PkrI GCNGC 2 cut(s) 358, 401
PshAI GACNNNNGTC 1 cut(s) 525
PspN4I GGNNCC 1 cut(s) 512
PsrI GAACNNNNNNTAC 2 cut(s) 623, 655
RsaI GTAC 1 cut(s) 164
RsaNI GTAC 1 cut(s) 163
RseI CAYNNNNRTG 3 cut(s) 89, 546, 1073
SaqAI TTAA 5 cut(s) 30, 108, 183, 482, 833
SatI GCNGC 2 cut(s) 357, 400
SduI GDGCHC 1 cut(s) 812
SfaNI GCATC 3 cut(s) 84, 322, 987
SfuI TTCGAA 1 cut(s) 699
SmiMI CAYNNNNRTG 3 cut(s) 89, 546, 1073
Sse9I AATT 4 cut(s) 151, 561, 606, 941
SsiI CCGC 1 cut(s) 413
SspMI CTAG 2 cut(s) 525, 741
StyI CCWWGG 2 cut(s) 488, 724
TaaI ACNGT 1 cut(s) 1032
TaqI TCGA 1 cut(s) 699
TasI AATT 4 cut(s) 151, 561, 606, 941
TatI WGTACW 1 cut(s) 162
TfiI GAWTC 1 cut(s) 674
Tru1I TTAA 5 cut(s) 30, 108, 183, 482, 833
Tru9I TTAA 5 cut(s) 30, 108, 183, 482, 833
TscAI CASTG 1 cut(s) 711
TseI GCWGC 2 cut(s) 356, 399
TspDTI ATGAA 9 cut(s) 17, 48, 398, 405, 452, 468, 683, 695, 1041
TspRI CASTG 1 cut(s) 711
XcmI CCANNNNNNNNNTGG 1 cut(s) 711
XspI CTAG 2 cut(s) 525, 741
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.