Rw2G013190

hAT family C-terminal dimerisation region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000421
Physical Location & Seq
Forward (+)
13932483 .. 13933587
1105 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G013190.1

Sequence Viewer

Length: 984 bp
ATGCTAAAGAGGTTTAGGCAAATTAAAAATGGTTTGCAACAGATGGTCATCAGTCCAAAGTGGGATGATTACAAAGAAGATGATGTTAGGAAGGCAGCTTCTGTGAAGGAGAAATTATTAGATGAGTTGCTGTGGGATGACATTGATTACATCATTTCTTTTACTGAGCCTATCTATGAGATAATCAGGAAAGCAGACACCGATAGGCCTTCTCTTCATTTACAAGTGAAGAAGGCTATTTATAGGAAAGAAAGGAAGCAACCTCATCAAGAGTCTCCATTTTGGGATGCAGTGTATAAGGTTCTAATGGCTCGTTGGTCCAAGAGCAATACTTCTCTCAATTGCTTGGCACATTCATTAAATCCGAAGTATTATAGTTCGGAATGGCTTAGTGAAGATACTAATCGGGTTGCTCCCCACAAAGATTTAGAGATTACAAGGGAGAGGAAAAATTGTATCCTTAGATACTTTGCCAATGAAGATGATCGAAGGAAAGTTAACATAGAATTTGCTAATTTTTCTATGTGTATGCAAGAGTTTGGAAGTGGAGATGCTATGAAGGATAGGTTTATTATGCAGCCTATAACATGGTGGGCTGTCCATGGAGCTTTGGCTCCATCTCTCCAAGCCATAGGCTTCAAGGTTCTAGGTCAACCTTGTTCTTCTTCATGTTGTGAAAGAAATTGGAGTACTTACAATTTCATTCACTCTGTGAGGAGGAACAAGAAAACACCACAAAGAGCGGAAGATTTGGTGTTTGTGCATACCAATCTTCACCTTTTAGCTAGGAGAAGCCCAAGTTACAATGAAAGTGCAACTCAAATGTGGGATGTTGGAGGTGATGAGTTTGGTTCTTTGGAAGAGTCTAATGTTGGAAGGCTTGAGATTACTAACCTTTCACTTGATGAACCACAATTAGAGGGGGTTTTGTTTAATGTTGATGATGAAGATGAAGACCTTGAGGATGTTGTCCAAGTTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Dimer_Tnp_hAT

Protein Analysis

327

Amino Acids

38.21

Weight (kDa)

5.52

Isoelectric Point (pI)

47.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dimer_Tnp_hAT PF05699 191 - 258 2.2e-09 hAT family C-terminal dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000421)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G08267
fragaria_vesca FvH4_2g14331 FvH4_2g16371 FvH4_2g26163 FvH4_3g42540 FvH4_4g02102 FvH4_4g12491 FvH4_4g35171 FvH4_5g06632 FvH4_5g06632 FvH4_5g06632 FvH4_5g08811 FvH4_5g08812 FvH4_5g23531 FvH4_6g10272 FvH4_6g40844 FvH4_7g16803 FvH4_7g16804
malus_domestica MD11G1099500.v1.1 MD17G1176800.v1.1
pyrus_communis pycom05g07840 pycom06g08730 pycom07g12010 pycom07g12020 pycom10g07270 pycom11g17470 pycom12g10610 pycom12g14240 pycom13g22040 pycom15g02440
rosa_chinensis RchiOBHm_Chr1g0371321 RchiOBHm_Chr2g0102701 RchiOBHm_Chr3g0465681 RchiOBHm_Chr4g0420941 RchiOBHm_Chr4g0434271 RchiOBHm_Chr4g0442721 RchiOBHm_Chr6g0262081 RchiOBHm_Chr6g0278171 RchiOBHm_Chr6g0294991 RchiOBHm_Chr6g0295001 RchiOBHm_Chr7g0205361 RchiOBHm_Chr7g0205371 RchiOBHm_Chr7g0223471
rosa_laevigata RLG00000005266
rosa_multiflora Rmu_sc0000493.1_g000033 Rmu_sc0000493.1_g000034 Rmu_sc0000507.1_g000007 Rmu_sc0000843.1_g000001 Rmu_sc0001075.1_g000033 Rmu_sc0002077.1_g000007 Rmu_sc0002077.1_g000008 Rmu_sc0002329.1_g000029 Rmu_sc0002539.1_g000077 Rmu_sc0002655.1_g000006 Rmu_sc0003127.1_g000020 Rmu_sc0003765.1_g000054 Rmu_sc0004368.1_g000023 Rmu_sc0004753.1_g000022 Rmu_sc0005297.1_g000014 Rmu_sc0007633.1_g000010 Rmu_sc0008164.1_g000005 Rmu_sc0008191.1_g000003 Rmu_sc0017900.1_g000005 Rmu_sc0022727.1_g000002
rosa_roxburghii Rroxscaffold_2G00079920 Rroxscaffold_3G00255890 Rroxscaffold_4G00295340 Rroxscaffold_4G00296360 Rroxscaffold_4G00299640 Rroxscaffold_6G00388210
rosa_rugosa Rorug02G0466700 Rorug04G0123200 Rorug05G0074800 Rorug07G0202900
rosa_samantha Rh1DG134700 Rh3CG159000 Rh4AG331000 Rh5AG521100 Rh5BG136400 Rh5DG127300 Rh5DG383100 Rh5DG386100 Rh5DG458000 Rh6CG450400 Rh7CG233800 Rh7DG407100
rosa_wichuraiana Rw1G004960 Rw1G005730 Rw1G006360 Rw1G017400 Rw2G013190 Rw2G022210 Rw2G029640 Rw5G020910 Rw5G036930 Rw6G016200 Rw7G018170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 743
AciI CCGC 1 cut(s) 743
AcsI RAATTY 1 cut(s) 506
AdeI CACNNNGTG 1 cut(s) 712
AfaI GTAC 1 cut(s) 691
AgsI TTSAA 2 cut(s) 640, 980
AluBI AGCT 3 cut(s) 98, 608, 785
AluI AGCT 3 cut(s) 98, 608, 785
Alw26I GTCTC 1 cut(s) 279
AlwNI CAGNNNCTG 1 cut(s) 101
AoxI GGCC 1 cut(s) 206
ApeKI GCWGC 2 cut(s) 95, 577
ApoI RAATTY 1 cut(s) 506
AspS9I GGNCC 1 cut(s) 318
AsuHPI GGTGA 2 cut(s) 767, 851
AvaII GGWCC 1 cut(s) 318
BbsI GAAGAC 1 cut(s) 960
BbvI GCAGC 2 cut(s) 107, 589
BccI CCATC 2 cut(s) 37, 625
BciVI GTATCC 1 cut(s) 467
BcoDI GTCTC 1 cut(s) 279
BfaI CTAG 2 cut(s) 647, 786
BfuI GTATCC 1 cut(s) 467
BisI GCNGC 2 cut(s) 96, 578
BlsI GCNGC 2 cut(s) 97, 579
BmcAI AGTACT 1 cut(s) 691
Bme18I GGWCC 1 cut(s) 318
BmgT120I GGNCC 1 cut(s) 318
BmiI GGNNCC 1 cut(s) 615
BmsI GCATC 2 cut(s) 277, 541
BpiI GAAGAC 1 cut(s) 960
BpuEI CTTGAG 2 cut(s) 902, 980
BsaBI GATNNNNATC 2 cut(s) 47, 402
BsaJI CCNNGG 1 cut(s) 601
Bse8I GATNNNNATC 2 cut(s) 47, 402
BseDI CCNNGG 1 cut(s) 601
BseGI GGATG 5 cut(s) 70, 142, 292, 835, 970
BseJI GATNNNNATC 2 cut(s) 47, 402
BseMII CTCAG 1 cut(s) 156
BseRI GAGGAG 1 cut(s) 730
BseXI GCAGC 2 cut(s) 107, 589
BshFI GGCC 1 cut(s) 208
BsmAI GTCTC 1 cut(s) 279
BsnI GGCC 1 cut(s) 208
Bsp143I GATC 1 cut(s) 484
Bsp19I CCATGG 1 cut(s) 601
BspACI CCGC 1 cut(s) 743
BspANI GGCC 1 cut(s) 208
BspCNI CTCAG 1 cut(s) 157
BspLI GGNNCC 1 cut(s) 615
BsrBI CCGCTC 1 cut(s) 743
BssECI CCNNGG 1 cut(s) 601
BssMI GATC 1 cut(s) 484
BssT1I CCWWGG 1 cut(s) 601
Bst6I CTCTTC 2 cut(s) 219, 855
BstDEI CTNAG 3 cut(s) 165, 389, 461
BstDSI CCRYGG 1 cut(s) 601
BstF5I GGATG 5 cut(s) 70, 142, 292, 835, 970
BstKTI GATC 1 cut(s) 487
BstMAI GTCTC 1 cut(s) 279
BstMBI GATC 1 cut(s) 484
BstV1I GCAGC 2 cut(s) 107, 589
BstV2I GAAGAC 1 cut(s) 960
BsuI GTATCC 1 cut(s) 467
BsuRI GGCC 1 cut(s) 208
BtgI CCRYGG 1 cut(s) 601
BtsCI GGATG 5 cut(s) 70, 142, 292, 835, 970
BtsI GCAGTG 1 cut(s) 297
BtsIMutI CAGTG 1 cut(s) 297
CaiI CAGNNNCTG 1 cut(s) 101
Cfr13I GGNCC 1 cut(s) 318
Csp6I GTAC 1 cut(s) 690
CviAII CATG 3 cut(s) 588, 602, 669
CviQI GTAC 1 cut(s) 690
DdeI CTNAG 3 cut(s) 165, 389, 461
DpnI GATC 1 cut(s) 486
DpnII GATC 1 cut(s) 484
DraIII CACNNNGTG 1 cut(s) 712
Eam1104I CTCTTC 2 cut(s) 219, 855
EarI CTCTTC 2 cut(s) 219, 855
Eco130I CCWWGG 1 cut(s) 601
Eco147I AGGCCT 1 cut(s) 208
Eco47I GGWCC 1 cut(s) 318
EcoT14I CCWWGG 1 cut(s) 601
ErhI CCWWGG 1 cut(s) 601
FaeI CATG 3 cut(s) 591, 605, 672
FatI CATG 3 cut(s) 587, 601, 668
Fnu4HI GCNGC 2 cut(s) 96, 578
FokI GGATG 5 cut(s) 77, 149, 299, 842, 977
Fsp4HI GCNGC 2 cut(s) 96, 578
FspBI CTAG 2 cut(s) 647, 786
GluI GCNGC 2 cut(s) 96, 578
HaeIII GGCC 1 cut(s) 208
Hin1II CATG 3 cut(s) 591, 605, 672
HincII GTYRAC 2 cut(s) 499, 653
HindII GTYRAC 2 cut(s) 499, 653
HinfI GANTC 2 cut(s) 272, 863
HpaI GTTAAC 1 cut(s) 499
HphI GGTGA 2 cut(s) 767, 851
Hpy166II GTNNAC 2 cut(s) 499, 653
Hpy188I TCNGA 2 cut(s) 366, 382
Hpy188III TCNNGA 2 cut(s) 187, 269
Hpy8I GTNNAC 2 cut(s) 499, 653
HpyAV CCTTC 7 cut(s) 85, 100, 219, 226, 483, 553, 870
HpyCH4V TGCA 6 cut(s) 37, 290, 532, 577, 763, 815
HpyF3I CTNAG 3 cut(s) 165, 389, 461
Hsp92II CATG 3 cut(s) 591, 605, 672
KspAI GTTAAC 1 cut(s) 499
Kzo9I GATC 1 cut(s) 484
LmnI GCTCC 3 cut(s) 418, 605, 619
LpnPI CCDG 1 cut(s) 172
Lsp1109I GCAGC 2 cut(s) 107, 589
LweI GCATC 2 cut(s) 277, 541
MaeI CTAG 2 cut(s) 647, 786
MaeIII GTNAC 1 cut(s) 800
MalI GATC 1 cut(s) 486
MbiI CCGCTC 1 cut(s) 743
MboI GATC 1 cut(s) 484
MfeI CAATTG 1 cut(s) 340
MluCI AATT 9 cut(s) 21, 113, 340, 451, 506, 514, 682, 697, 914
MlyI GAGTC 2 cut(s) 281, 872
MmeI TCCRAC 2 cut(s) 814, 853
MnlI CCTC 8 cut(s) 3, 273, 438, 708, 711, 830, 913, 955
MseI TTAA 4 cut(s) 24, 359, 498, 933
MunI CAATTG 1 cut(s) 340
NcoI CCATGG 1 cut(s) 601
NdeII GATC 1 cut(s) 484
NlaIII CATG 3 cut(s) 591, 605, 672
NlaIV GGNNCC 1 cut(s) 615
PceI AGGCCT 1 cut(s) 208
PkrI GCNGC 2 cut(s) 97, 579
PleI GAGTC 2 cut(s) 280, 871
PpsI GAGTC 2 cut(s) 280, 871
PspN4I GGNNCC 1 cut(s) 615
PspPI GGNCC 1 cut(s) 318
PstNI CAGNNNCTG 1 cut(s) 101
RsaI GTAC 1 cut(s) 691
RsaNI GTAC 1 cut(s) 690
SaqAI TTAA 4 cut(s) 24, 359, 498, 933
SatI GCNGC 2 cut(s) 96, 578
Sau3AI GATC 1 cut(s) 484
Sau96I GGNCC 1 cut(s) 318
ScaI AGTACT 1 cut(s) 691
SchI GAGTC 2 cut(s) 281, 872
SfaNI GCATC 2 cut(s) 277, 541
SinI GGWCC 1 cut(s) 318
SmlI CTYRAG 2 cut(s) 881, 959
SmoI CTYRAG 2 cut(s) 881, 959
Sse9I AATT 9 cut(s) 21, 113, 340, 451, 506, 514, 682, 697, 914
SseBI AGGCCT 1 cut(s) 208
SsiI CCGC 1 cut(s) 743
SspMI CTAG 2 cut(s) 647, 786
StuI AGGCCT 1 cut(s) 208
StyI CCWWGG 1 cut(s) 601
TaqI TCGA 1 cut(s) 487
TasI AATT 9 cut(s) 21, 113, 340, 451, 506, 514, 682, 697, 914
TatI WGTACW 1 cut(s) 689
Tru1I TTAA 4 cut(s) 24, 359, 498, 933
Tru9I TTAA 4 cut(s) 24, 359, 498, 933
TscAI CASTG 1 cut(s) 297
TseI GCWGC 2 cut(s) 95, 577
TspRI CASTG 1 cut(s) 297
VpaK11BI GGWCC 1 cut(s) 318
XapI RAATTY 1 cut(s) 506
XspI CTAG 2 cut(s) 647, 786
ZrmI AGTACT 1 cut(s) 691
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.