Rmu_sc0008191.1_g000003

Protein of unknown function (DUF 659)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008191.1
OG0000421
Physical Location & Seq
Reverse (-)
11655 .. 12587
933 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008191.1_g000003.1.cds

Sequence Viewer

Length: 933 bp
atggtgtttggaaaaagaaaaccatcccgtcaagaaccaatttttgaagaaaattatgaaggtgatgtcggtgagcatgaagacaataatactgttgaagaaactcaagcaagtaatacagaccaatcatcgagtagaaacagccatgaacaagctcaagaatctcaaggaattccaatgaattctgacataaagccattactcaatgaagttattatcacaggtggagcgcaaggaaaaaattcgggtggaacaaaatcatggacctgcaaacattgtgatggtcagtataagagttcatatactcgcattcactaccacttttttggtaatctccctggaaaaaaatcagagatccgtcgatctcaatcattgattaataatcgggaggaatatgagagggttcgcagaatggttagaaaaaaaaaaaaaaaaggattttcttcatctttgaaaagctcaacaatcttgaggcaacaaccgcaaaaatccaccgcaggtgctcttgatgatatgttcaagattatggaaaaaaatagtgttgatatgaaggtgatgagaggattgtgcgctaatggaattcagtttaatgtgttaagaaatccccaatttcatgagatgatttcagctataaatcatggacccaagggttataaggctccatctgctgaaaaagcaagagctactttgcttgatgagtgtaaacgaagtctggacaaagaattagctcctgttaaagatacatggtttactcacggtgtttcaattgtatcagatggatggtctaacatgaagcatgagccacttatcaacattattgctgcaaatagtagaggagcgttgtttctttatgctcaagatttttctgggataaaaaaaactggtgcagtgattgctgactttatgcttactgcaattgaagatgtgggatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT

Protein Analysis

310

Amino Acids

34.73

Weight (kDa)

9.18

Isoelectric Point (pI)

41.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000421)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G08267
fragaria_vesca FvH4_2g14331 FvH4_2g16371 FvH4_2g26163 FvH4_3g42540 FvH4_4g02102 FvH4_4g12491 FvH4_4g35171 FvH4_5g06632 FvH4_5g06632 FvH4_5g06632 FvH4_5g08811 FvH4_5g08812 FvH4_5g23531 FvH4_6g10272 FvH4_6g40844 FvH4_7g16803 FvH4_7g16804
malus_domestica MD11G1099500.v1.1 MD17G1176800.v1.1
pyrus_communis pycom05g07840 pycom06g08730 pycom07g12010 pycom07g12020 pycom10g07270 pycom11g17470 pycom12g10610 pycom12g14240 pycom13g22040 pycom15g02440
rosa_chinensis RchiOBHm_Chr1g0371321 RchiOBHm_Chr2g0102701 RchiOBHm_Chr3g0465681 RchiOBHm_Chr4g0420941 RchiOBHm_Chr4g0434271 RchiOBHm_Chr4g0442721 RchiOBHm_Chr6g0262081 RchiOBHm_Chr6g0278171 RchiOBHm_Chr6g0294991 RchiOBHm_Chr6g0295001 RchiOBHm_Chr7g0205361 RchiOBHm_Chr7g0205371 RchiOBHm_Chr7g0223471
rosa_laevigata RLG00000005266
rosa_multiflora Rmu_sc0000493.1_g000033 Rmu_sc0000493.1_g000034 Rmu_sc0000507.1_g000007 Rmu_sc0000843.1_g000001 Rmu_sc0001075.1_g000033 Rmu_sc0002077.1_g000007 Rmu_sc0002077.1_g000008 Rmu_sc0002329.1_g000029 Rmu_sc0002539.1_g000077 Rmu_sc0002655.1_g000006 Rmu_sc0003127.1_g000020 Rmu_sc0003765.1_g000054 Rmu_sc0004368.1_g000023 Rmu_sc0004753.1_g000022 Rmu_sc0005297.1_g000014 Rmu_sc0007633.1_g000010 Rmu_sc0008164.1_g000005 Rmu_sc0008191.1_g000003 Rmu_sc0017900.1_g000005 Rmu_sc0022727.1_g000002
rosa_roxburghii Rroxscaffold_2G00079920 Rroxscaffold_3G00255890 Rroxscaffold_4G00295340 Rroxscaffold_4G00296360 Rroxscaffold_4G00299640 Rroxscaffold_6G00388210
rosa_rugosa Rorug02G0466700 Rorug04G0123200 Rorug05G0074800 Rorug07G0202900
rosa_samantha Rh1DG134700 Rh3CG159000 Rh4AG331000 Rh5AG521100 Rh5BG136400 Rh5DG127300 Rh5DG383100 Rh5DG386100 Rh5DG458000 Rh6CG450400 Rh7CG233800 Rh7DG407100
rosa_wichuraiana Rw1G004960 Rw1G005730 Rw1G006360 Rw1G017400 Rw2G013190 Rw2G022210 Rw2G029640 Rw5G020910 Rw5G036930 Rw6G016200 Rw7G018170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 654
AarI CACCTGC 1 cut(s) 488
Acc36I ACCTGC 2 cut(s) 275, 488
AciI CCGC 2 cut(s) 482, 495
AclWI GGATC 1 cut(s) 349
AcsI RAATTY 4 cut(s) 171, 181, 241, 579
AgsI TTSAA 6 cut(s) 47, 98, 454, 520, 765, 920
AjnI CCWGG 1 cut(s) 337
AluBI AGCT 5 cut(s) 155, 459, 629, 683, 728
AluI AGCT 5 cut(s) 155, 459, 629, 683, 728
Alw21I GWGCWC 1 cut(s) 505
AlwI GGATC 1 cut(s) 349
ApeKI GCWGC 1 cut(s) 821
ApoI RAATTY 4 cut(s) 171, 181, 241, 579
AseI ATTAAT 1 cut(s) 378
Asp700I GAANNNNTTC 1 cut(s) 241
AspLEI GCGC 2 cut(s) 232, 572
AspS9I GGNCC 2 cut(s) 264, 641
AsuHPI GGTGA 3 cut(s) 74, 83, 565
AvaII GGWCC 2 cut(s) 264, 641
BbsI GAAGAC 1 cut(s) 87
Bbv12I GWGCWC 1 cut(s) 505
BbvI GCAGC 1 cut(s) 808
BccI CCATC 5 cut(s) 31, 275, 670, 770, 774
BciT130I CCWGG 1 cut(s) 339
BfuAI ACCTGC 2 cut(s) 275, 488
BisI GCNGC 1 cut(s) 822
BlsI GCNGC 1 cut(s) 823
Bme1390I CCNGG 1 cut(s) 339
Bme18I GGWCC 2 cut(s) 264, 641
BmgT120I GGNCC 2 cut(s) 264, 641
BmiI GGNNCC 2 cut(s) 643, 660
BmrFI CCNGG 1 cut(s) 339
BpiI GAAGAC 1 cut(s) 87
BpuEI CTTGAG 5 cut(s) 90, 141, 150, 490, 840
BsaBI GATNNNNATC 1 cut(s) 367
BsaJI CCNNGG 2 cut(s) 337, 645
Bse1I ACTGG 1 cut(s) 886
Bse8I GATNNNNATC 1 cut(s) 367
BseBI CCWGG 1 cut(s) 339
BseDI CCNNGG 2 cut(s) 337, 645
BseGI GGATG 2 cut(s) 23, 785
BseJI GATNNNNATC 1 cut(s) 367
BseNI ACTGG 1 cut(s) 886
BseRI GAGGAG 1 cut(s) 849
BseXI GCAGC 1 cut(s) 808
BsgI GTGCAG 1 cut(s) 906
BsiHKAI GWGCWC 1 cut(s) 505
BsmI GAATGC 1 cut(s) 309
Bsp1286I GDGCHC 1 cut(s) 505
Bsp143I GATC 2 cut(s) 354, 362
BspACI CCGC 2 cut(s) 482, 495
BspHI TCATGA 1 cut(s) 613
BspLI GGNNCC 2 cut(s) 643, 660
BspMI ACCTGC 2 cut(s) 275, 488
BspPI GGATC 1 cut(s) 349
BsrI ACTGG 1 cut(s) 886
BssECI CCNNGG 2 cut(s) 337, 645
BssMI GATC 2 cut(s) 354, 362
BssT1I CCWWGG 1 cut(s) 645
Bst2UI CCWGG 1 cut(s) 339
Bst4CI ACNGT 2 cut(s) 94, 758
BstAPI GCANNNNNTGC 1 cut(s) 893
BstF5I GGATG 2 cut(s) 23, 785
BstHHI GCGC 2 cut(s) 232, 572
BstKTI GATC 2 cut(s) 357, 365
BstMBI GATC 2 cut(s) 354, 362
BstMWI GCNNNNNNNGC 4 cut(s) 481, 665, 674, 893
BstNI CCWGG 1 cut(s) 339
BstSCI CCNGG 1 cut(s) 337
BstV1I GCAGC 1 cut(s) 808
BstV2I GAAGAC 1 cut(s) 87
BstX2I RGATCY 1 cut(s) 354
BstXI CCANNNNNNTGG 1 cut(s) 326
BstYI RGATCY 1 cut(s) 354
BtsCI GGATG 2 cut(s) 23, 785
BtsI GCAGTG 1 cut(s) 894
BtsIMutI CAGTG 1 cut(s) 894
BveI ACCTGC 2 cut(s) 275, 488
CciI TCATGA 1 cut(s) 613
CfoI GCGC 2 cut(s) 232, 572
Cfr13I GGNCC 2 cut(s) 264, 641
CviAII CATG 8 cut(s) 77, 146, 261, 614, 638, 744, 790, 797
CviJI RGCY 9 cut(s) 144, 155, 196, 459, 629, 659, 683, 728, 802
CviKI_1 RGCY 9 cut(s) 144, 155, 196, 459, 629, 659, 683, 728, 802
DpnI GATC 2 cut(s) 356, 364
DpnII GATC 2 cut(s) 354, 362
Eco130I CCWWGG 1 cut(s) 645
Eco47I GGWCC 2 cut(s) 264, 641
EcoRI GAATTC 3 cut(s) 171, 181, 579
EcoRII CCWGG 1 cut(s) 337
EcoT14I CCWWGG 1 cut(s) 645
ErhI CCWWGG 1 cut(s) 645
FaeI CATG 8 cut(s) 80, 149, 264, 617, 641, 747, 793, 800
FalI AAGNNNNNCTT 2 cut(s) 670, 702
FatI CATG 8 cut(s) 76, 145, 260, 613, 637, 743, 789, 796
Fnu4HI GCNGC 1 cut(s) 822
FokI GGATG 2 cut(s) 10, 792
Fsp4HI GCNGC 1 cut(s) 822
GlaI GCGC 2 cut(s) 231, 571
GluI GCNGC 1 cut(s) 822
HhaI GCGC 2 cut(s) 232, 572
Hin1II CATG 8 cut(s) 80, 149, 264, 617, 641, 747, 793, 800
Hin6I GCGC 2 cut(s) 230, 570
HinP1I GCGC 2 cut(s) 230, 570
HinfI GANTC 1 cut(s) 161
HphI GGTGA 3 cut(s) 74, 83, 565
Hpy166II GTNNAC 2 cut(s) 704, 750
Hpy188I TCNGA 3 cut(s) 187, 352, 775
Hpy188III TCNNGA 9 cut(s) 32, 158, 386, 469, 506, 520, 614, 713, 857
Hpy8I GTNNAC 2 cut(s) 704, 750
Hpy99I CGWCG 1 cut(s) 363
HpyAV CCTTC 2 cut(s) 53, 544
HpyCH4III ACNGT 2 cut(s) 94, 758
HpyCH4V TGCA 4 cut(s) 270, 824, 887, 914
HpyF10VI GCNNNNNNNGC 4 cut(s) 481, 665, 674, 893
Hsp92II CATG 8 cut(s) 80, 149, 264, 617, 641, 747, 793, 800
HspAI GCGC 2 cut(s) 230, 570
Kzo9I GATC 2 cut(s) 354, 362
LmnI GCTCC 4 cut(s) 227, 664, 733, 836
LpnPI CCDG 9 cut(s) 207, 280, 324, 351, 483, 698, 744, 852, 867
Lsp1109I GCAGC 1 cut(s) 808
MalI GATC 2 cut(s) 356, 364
MboI GATC 2 cut(s) 354, 362
MboII GAAGA 5 cut(s) 59, 92, 110, 435, 932
MfeI CAATTG 2 cut(s) 765, 915
MflI RGATCY 1 cut(s) 354
MhlI GDGCHC 1 cut(s) 505
MnlI CCTC 5 cut(s) 382, 393, 465, 554, 827
MroXI GAANNNNTTC 1 cut(s) 241
MseI TTAA 4 cut(s) 378, 588, 596, 735
MslI CAYNNNNRTG 1 cut(s) 279
MspR9I CCNGG 1 cut(s) 339
MunI CAATTG 2 cut(s) 765, 915
Mva1269I GAATGC 1 cut(s) 309
MvaI CCWGG 1 cut(s) 339
MwoI GCNNNNNNNGC 4 cut(s) 481, 665, 674, 893
NdeII GATC 2 cut(s) 354, 362
NlaIII CATG 8 cut(s) 80, 149, 264, 617, 641, 747, 793, 800
NlaIV GGNNCC 2 cut(s) 643, 660
PagI TCATGA 1 cut(s) 613
PaqCI CACCTGC 1 cut(s) 488
PctI GAATGC 1 cut(s) 309
PdmI GAANNNNTTC 1 cut(s) 241
PfeI GAWTC 1 cut(s) 161
PkrI GCNGC 1 cut(s) 823
PshBI ATTAAT 1 cut(s) 378
PsiI TTATAA 1 cut(s) 654
Psp6I CCWGG 1 cut(s) 337
PspGI CCWGG 1 cut(s) 337
PspN4I GGNNCC 2 cut(s) 643, 660
PspPI GGNCC 2 cut(s) 264, 641
PsuI RGATCY 1 cut(s) 354
RseI CAYNNNNRTG 1 cut(s) 279
SaqAI TTAA 4 cut(s) 378, 588, 596, 735
SatI GCNGC 1 cut(s) 822
Sau3AI GATC 2 cut(s) 354, 362
Sau96I GGNCC 2 cut(s) 264, 641
ScrFI CCNGG 1 cut(s) 339
SduI GDGCHC 1 cut(s) 505
SinI GGWCC 2 cut(s) 264, 641
SmiMI CAYNNNNRTG 1 cut(s) 279
SmlI CTYRAG 5 cut(s) 105, 156, 165, 469, 855
SmoI CTYRAG 5 cut(s) 105, 156, 165, 469, 855
SsiI CCGC 2 cut(s) 482, 495
StyD4I CCNGG 1 cut(s) 337
StyI CCWWGG 1 cut(s) 645
TaaI ACNGT 2 cut(s) 94, 758
TaqI TCGA 2 cut(s) 131, 361
TfiI GAWTC 1 cut(s) 161
Tru1I TTAA 4 cut(s) 378, 588, 596, 735
Tru9I TTAA 4 cut(s) 378, 588, 596, 735
TscAI CASTG 1 cut(s) 894
TseI GCWGC 1 cut(s) 821
TspGWI ACGGA 1 cut(s) 347
TspRI CASTG 1 cut(s) 894
VpaK11BI GGWCC 2 cut(s) 264, 641
VspI ATTAAT 1 cut(s) 378
XapI RAATTY 4 cut(s) 171, 181, 241, 579
XmnI GAANNNNTTC 1 cut(s) 241
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.