RchiOBHm_Chr1g0371321

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000421
Physical Location & Seq
Forward (+)
60575909 .. 60577382
1474 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ59541

Sequence Viewer

Length: 228 bp
ATGTTCGCGGCTTCTCTCCAGACGCAATCAAACTTCGTGTCGCGTCTTCTTCTACTACAGACTTCTCTGGTTCTCTCAAAGGAAACCAGCTGGAGCCTCTTCTTTCGCTTCGGGACCATGAGTGGAGATAGAACACCTCCTATTAGTTCAAGTGCCGGGTCTGTTAATGCCAATACTAGTAGTGGAGCTGCTGATCCTGAAAATATAGTGCAAGATGATAATGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

75

Amino Acids

8.0

Weight (kDa)

4.53

Isoelectric Point (pI)

44.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000421)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G08267
fragaria_vesca FvH4_2g14331 FvH4_2g16371 FvH4_2g26163 FvH4_3g42540 FvH4_4g02102 FvH4_4g12491 FvH4_4g35171 FvH4_5g06632 FvH4_5g06632 FvH4_5g06632 FvH4_5g08811 FvH4_5g08812 FvH4_5g23531 FvH4_6g10272 FvH4_6g40844 FvH4_7g16803 FvH4_7g16804
malus_domestica MD11G1099500.v1.1 MD17G1176800.v1.1
pyrus_communis pycom05g07840 pycom06g08730 pycom07g12010 pycom07g12020 pycom10g07270 pycom11g17470 pycom12g10610 pycom12g14240 pycom13g22040 pycom15g02440
rosa_chinensis RchiOBHm_Chr1g0371321 RchiOBHm_Chr2g0102701 RchiOBHm_Chr3g0465681 RchiOBHm_Chr4g0420941 RchiOBHm_Chr4g0434271 RchiOBHm_Chr4g0442721 RchiOBHm_Chr6g0262081 RchiOBHm_Chr6g0278171 RchiOBHm_Chr6g0294991 RchiOBHm_Chr6g0295001 RchiOBHm_Chr7g0205361 RchiOBHm_Chr7g0205371 RchiOBHm_Chr7g0223471
rosa_laevigata RLG00000005266
rosa_multiflora Rmu_sc0000493.1_g000033 Rmu_sc0000493.1_g000034 Rmu_sc0000507.1_g000007 Rmu_sc0000843.1_g000001 Rmu_sc0001075.1_g000033 Rmu_sc0002077.1_g000007 Rmu_sc0002077.1_g000008 Rmu_sc0002329.1_g000029 Rmu_sc0002539.1_g000077 Rmu_sc0002655.1_g000006 Rmu_sc0003127.1_g000020 Rmu_sc0003765.1_g000054 Rmu_sc0004368.1_g000023 Rmu_sc0004753.1_g000022 Rmu_sc0005297.1_g000014 Rmu_sc0007633.1_g000010 Rmu_sc0008164.1_g000005 Rmu_sc0008191.1_g000003 Rmu_sc0017900.1_g000005 Rmu_sc0022727.1_g000002
rosa_roxburghii Rroxscaffold_2G00079920 Rroxscaffold_3G00255890 Rroxscaffold_4G00295340 Rroxscaffold_4G00296360 Rroxscaffold_4G00299640 Rroxscaffold_6G00388210
rosa_rugosa Rorug02G0466700 Rorug04G0123200 Rorug05G0074800 Rorug07G0202900
rosa_samantha Rh1DG134700 Rh3CG159000 Rh4AG331000 Rh5AG521100 Rh5BG136400 Rh5DG127300 Rh5DG383100 Rh5DG386100 Rh5DG458000 Rh6CG450400 Rh7CG233800 Rh7DG407100
rosa_wichuraiana Rw1G004960 Rw1G005730 Rw1G006360 Rw1G017400 Rw2G013190 Rw2G022210 Rw2G029640 Rw5G020910 Rw5G036930 Rw6G016200 Rw7G018170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 8, 43
AciI CCGC 1 cut(s) 8
AclWI GGATC 1 cut(s) 188
AgsI TTSAA 1 cut(s) 150
AhlI ACTAGT 1 cut(s) 176
AluBI AGCT 2 cut(s) 90, 188
AluI AGCT 2 cut(s) 90, 188
AlwI GGATC 1 cut(s) 188
ApeKI GCWGC 1 cut(s) 188
ArsI GACNNNNNNTTYG 2 cut(s) 23, 55
AspS9I GGNCC 1 cut(s) 114
AsuC2I CCSGG 1 cut(s) 157
AvaII GGWCC 1 cut(s) 114
BbsI GAAGAC 1 cut(s) 38
BbvI GCAGC 1 cut(s) 175
BcnI CCSGG 1 cut(s) 157
BcuI ACTAGT 1 cut(s) 176
BfaI CTAG 1 cut(s) 177
BfmI CTRYAG 1 cut(s) 56
BisI GCNGC 2 cut(s) 9, 189
BlsI GCNGC 2 cut(s) 10, 190
Bme1390I CCNGG 1 cut(s) 157
Bme18I GGWCC 1 cut(s) 114
BmgT120I GGNCC 1 cut(s) 114
BmiI GGNNCC 2 cut(s) 95, 115
BmrFI CCNGG 1 cut(s) 157
BpiI GAAGAC 1 cut(s) 38
BpmI CTGGAG 1 cut(s) 112
BpuMI CCSGG 1 cut(s) 157
BseXI GCAGC 1 cut(s) 175
Bsh1236I CGCG 2 cut(s) 8, 43
BsiSI CCGG 1 cut(s) 156
BslFI GGGAC 1 cut(s) 127
BsmFI GGGAC 1 cut(s) 127
Bsp143I GATC 1 cut(s) 193
BspACI CCGC 1 cut(s) 8
BspFNI CGCG 2 cut(s) 8, 43
BspLI GGNNCC 2 cut(s) 95, 115
BspPI GGATC 1 cut(s) 188
BssMI GATC 1 cut(s) 193
Bst6I CTCTTC 1 cut(s) 104
BstFNI CGCG 2 cut(s) 8, 43
BstKTI GATC 1 cut(s) 196
BstMBI GATC 1 cut(s) 193
BstSCI CCNGG 1 cut(s) 155
BstSFI CTRYAG 1 cut(s) 56
BstUI CGCG 2 cut(s) 8, 43
BstV1I GCAGC 1 cut(s) 175
BstV2I GAAGAC 1 cut(s) 38
Cfr13I GGNCC 1 cut(s) 114
CseI GACGC 2 cut(s) 31, 32
CviAII CATG 1 cut(s) 118
CviJI RGCY 4 cut(s) 11, 90, 96, 188
CviKI_1 RGCY 4 cut(s) 11, 90, 96, 188
DpnI GATC 1 cut(s) 195
DpnII GATC 1 cut(s) 193
Eam1104I CTCTTC 1 cut(s) 104
EarI CTCTTC 1 cut(s) 104
Eco47I GGWCC 1 cut(s) 114
FaeI CATG 1 cut(s) 121
FaiI YATR 2 cut(s) 119, 206
FaqI GGGAC 1 cut(s) 127
FatI CATG 1 cut(s) 117
Fnu4HI GCNGC 2 cut(s) 9, 189
Fsp4HI GCNGC 2 cut(s) 9, 189
FspBI CTAG 1 cut(s) 177
GluI GCNGC 2 cut(s) 9, 189
GsuI CTGGAG 1 cut(s) 112
HapII CCGG 1 cut(s) 156
HgaI GACGC 2 cut(s) 31, 32
Hin1II CATG 1 cut(s) 121
HpaII CCGG 1 cut(s) 156
Hpy188III TCNNGA 3 cut(s) 19, 112, 197
HpyCH4V TGCA 1 cut(s) 211
Hsp92II CATG 1 cut(s) 121
Kzo9I GATC 1 cut(s) 193
LmnI GCTCC 2 cut(s) 93, 185
LpnPI CCDG 6 cut(s) 32, 53, 76, 100, 169, 210
Lsp1109I GCAGC 1 cut(s) 175
MaeI CTAG 1 cut(s) 177
MalI GATC 1 cut(s) 195
MboI GATC 1 cut(s) 193
MboII GAAGA 3 cut(s) 38, 41, 91
MnlI CCTC 2 cut(s) 107, 147
MseI TTAA 2 cut(s) 165, 226
MspA1I CMGCKG 1 cut(s) 90
MspI CCGG 1 cut(s) 156
MspR9I CCNGG 1 cut(s) 157
MvnI CGCG 2 cut(s) 8, 43
NciI CCSGG 1 cut(s) 157
NdeII GATC 1 cut(s) 193
NlaIII CATG 1 cut(s) 121
NlaIV GGNNCC 2 cut(s) 95, 115
PkrI GCNGC 2 cut(s) 10, 190
PspN4I GGNNCC 2 cut(s) 95, 115
PspPI GGNCC 1 cut(s) 114
PvuII CAGCTG 1 cut(s) 90
SaqAI TTAA 2 cut(s) 165, 226
SatI GCNGC 2 cut(s) 9, 189
Sau3AI GATC 1 cut(s) 193
Sau96I GGNCC 1 cut(s) 114
ScrFI CCNGG 1 cut(s) 157
SetI ASST 3 cut(s) 92, 139, 190
SfcI CTRYAG 1 cut(s) 56
SinI GGWCC 1 cut(s) 114
SpeI ACTAGT 1 cut(s) 176
SsiI CCGC 1 cut(s) 8
SspMI CTAG 1 cut(s) 177
StyD4I CCNGG 1 cut(s) 155
TauI GCSGC 1 cut(s) 11
Tru1I TTAA 2 cut(s) 165, 226
Tru9I TTAA 2 cut(s) 165, 226
TseI GCWGC 1 cut(s) 188
VpaK11BI GGWCC 1 cut(s) 114
XspI CTAG 1 cut(s) 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.