RchiOBHm_Chr6g0262081

Protein of unknown function (DUF 659)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000421
Physical Location & Seq
Reverse (-)
16780339 .. 16782292
1954 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23502

Sequence Viewer

Length: 642 bp
ATGAAGAAGATTCAAAAACGGCAAGGTGGAGGAGGTTGGAAGTGGCAGTGCAATTTCTGCAAATTGTACTACAGCGGCTCTTATACTAGAGTTCGTAGTCATTTATTGAAAGAAGGAATAGCGGGGGTGGCAATTTGCACCAAGGTTACTCCTCATGCCTTTATTGCAATGACCAAGTTGGCGAGAGAATCCAAGGAGAGATTAATGAATGCAGCTCCTAGACATGTTCCTCTACCATCAGCACAACAGCAAGGACTCCAAGGAGGGAGTTCCTCTACTAGTAGCTATGGGATGAGTTATCATGCCTATACACAAGCACCAACAGCAAGTGATAGTGGAAAGAAGAGGAAAACAGCTGCTGGTTCTGTTGAAAAGGCCTTCCAAAACTCAGCTAGGGAGCAATGTGATGGTGAGGTTGCAAGGATGTACTACACCGGTGGCTTATCTTTCAACCTAGCTAGAAATCCACACTATCGAAACTCCTACATTCGTGCTTCTACCCTTCCAGGCTATATTCCACCAGGTTACAATGCTCTAAGGACCACACTTCTTGCAAAAGAAAGGAAAAATATTGAGCATCATTTGGAGCCAATCAAGAAAACATGGAAAGATAAAGGTGTGAGTCTTTGTAGTGATGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659

Protein Analysis

213

Amino Acids

23.58

Weight (kDa)

9.94

Isoelectric Point (pI)

40.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000421)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G08267
fragaria_vesca FvH4_2g14331 FvH4_2g16371 FvH4_2g26163 FvH4_3g42540 FvH4_4g02102 FvH4_4g12491 FvH4_4g35171 FvH4_5g06632 FvH4_5g06632 FvH4_5g06632 FvH4_5g08811 FvH4_5g08812 FvH4_5g23531 FvH4_6g10272 FvH4_6g40844 FvH4_7g16803 FvH4_7g16804
malus_domestica MD11G1099500.v1.1 MD17G1176800.v1.1
pyrus_communis pycom05g07840 pycom06g08730 pycom07g12010 pycom07g12020 pycom10g07270 pycom11g17470 pycom12g10610 pycom12g14240 pycom13g22040 pycom15g02440
rosa_chinensis RchiOBHm_Chr1g0371321 RchiOBHm_Chr2g0102701 RchiOBHm_Chr3g0465681 RchiOBHm_Chr4g0420941 RchiOBHm_Chr4g0434271 RchiOBHm_Chr4g0442721 RchiOBHm_Chr6g0262081 RchiOBHm_Chr6g0278171 RchiOBHm_Chr6g0294991 RchiOBHm_Chr6g0295001 RchiOBHm_Chr7g0205361 RchiOBHm_Chr7g0205371 RchiOBHm_Chr7g0223471
rosa_laevigata RLG00000005266
rosa_multiflora Rmu_sc0000493.1_g000033 Rmu_sc0000493.1_g000034 Rmu_sc0000507.1_g000007 Rmu_sc0000843.1_g000001 Rmu_sc0001075.1_g000033 Rmu_sc0002077.1_g000007 Rmu_sc0002077.1_g000008 Rmu_sc0002329.1_g000029 Rmu_sc0002539.1_g000077 Rmu_sc0002655.1_g000006 Rmu_sc0003127.1_g000020 Rmu_sc0003765.1_g000054 Rmu_sc0004368.1_g000023 Rmu_sc0004753.1_g000022 Rmu_sc0005297.1_g000014 Rmu_sc0007633.1_g000010 Rmu_sc0008164.1_g000005 Rmu_sc0008191.1_g000003 Rmu_sc0017900.1_g000005 Rmu_sc0022727.1_g000002
rosa_roxburghii Rroxscaffold_2G00079920 Rroxscaffold_3G00255890 Rroxscaffold_4G00295340 Rroxscaffold_4G00296360 Rroxscaffold_4G00299640 Rroxscaffold_6G00388210
rosa_rugosa Rorug02G0466700 Rorug04G0123200 Rorug05G0074800 Rorug07G0202900
rosa_samantha Rh1DG134700 Rh3CG159000 Rh4AG331000 Rh5AG521100 Rh5BG136400 Rh5DG127300 Rh5DG383100 Rh5DG386100 Rh5DG458000 Rh6CG450400 Rh7CG233800 Rh7DG407100
rosa_wichuraiana Rw1G004960 Rw1G005730 Rw1G006360 Rw1G017400 Rw2G013190 Rw2G022210 Rw2G029640 Rw5G020910 Rw5G036930 Rw6G016200 Rw7G018170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 75, 122
AfaI GTAC 2 cut(s) 68, 428
AflIII ACRYGT 1 cut(s) 223
AgeI ACCGGT 1 cut(s) 434
AgsI TTSAA 4 cut(s) 14, 109, 371, 451
AhlI ACTAGT 1 cut(s) 278
AjnI CCWGG 2 cut(s) 505, 520
AluBI AGCT 5 cut(s) 215, 285, 356, 392, 458
AluI AGCT 5 cut(s) 215, 285, 356, 392, 458
AlwNI CAGNNNCTG 1 cut(s) 359
AoxI GGCC 1 cut(s) 375
ApeKI GCWGC 2 cut(s) 212, 356
AseI ATTAAT 1 cut(s) 203
AsiGI ACCGGT 1 cut(s) 434
AspS9I GGNCC 1 cut(s) 540
AsuHPI GGTGA 1 cut(s) 422
AvaII GGWCC 1 cut(s) 540
BbvI GCAGC 2 cut(s) 224, 343
BccI CCATC 3 cut(s) 244, 401, 629
BceAI ACGGC 1 cut(s) 35
BciT130I CCWGG 2 cut(s) 507, 522
BcuI ACTAGT 1 cut(s) 278
BfaI CTAG 6 cut(s) 87, 219, 279, 393, 455, 459
BfmI CTRYAG 1 cut(s) 70
BisI GCNGC 3 cut(s) 76, 213, 357
BlsI GCNGC 3 cut(s) 77, 214, 358
Bme1390I CCNGG 2 cut(s) 507, 522
Bme18I GGWCC 1 cut(s) 540
BmgT120I GGNCC 1 cut(s) 540
BmiI GGNNCC 1 cut(s) 588
BmrFI CCNGG 2 cut(s) 507, 522
BmsI GCATC 1 cut(s) 586
BsaJI CCNNGG 3 cut(s) 141, 192, 259
BsaWI WCCGGW 1 cut(s) 434
Bse118I RCCGGY 1 cut(s) 434
Bse3DI GCAATG 2 cut(s) 174, 407
BseBI CCWGG 2 cut(s) 507, 522
BseDI CCNNGG 3 cut(s) 141, 192, 259
BseGI GGATG 2 cut(s) 297, 429
BseMI GCAATG 2 cut(s) 174, 407
BseMII CTCAG 1 cut(s) 402
BseRI GAGGAG 2 cut(s) 45, 141
BseXI GCAGC 2 cut(s) 224, 343
BshFI GGCC 1 cut(s) 377
BshTI ACCGGT 1 cut(s) 434
BsiSI CCGG 1 cut(s) 435
BsmI GAATGC 1 cut(s) 214
BsnI GGCC 1 cut(s) 377
BspACI CCGC 2 cut(s) 75, 122
BspANI GGCC 1 cut(s) 377
BspCNI CTCAG 1 cut(s) 401
BspLI GGNNCC 1 cut(s) 588
BsrDI GCAATG 2 cut(s) 174, 407
BsrFI RCCGGY 1 cut(s) 434
BssAI RCCGGY 1 cut(s) 434
BssECI CCNNGG 3 cut(s) 141, 192, 259
BssT1I CCWWGG 3 cut(s) 141, 192, 259
Bst2UI CCWGG 2 cut(s) 507, 522
Bst6I CTCTTC 1 cut(s) 338
BstAPI GCANNNNNTGC 1 cut(s) 57
BstDEI CTNAG 2 cut(s) 388, 536
BstF5I GGATG 2 cut(s) 297, 429
BstMWI GCNNNNNNNGC 4 cut(s) 57, 128, 164, 323
BstNI CCWGG 2 cut(s) 507, 522
BstNSI RCATGY 1 cut(s) 227
BstSCI CCNGG 2 cut(s) 505, 520
BstSFI CTRYAG 1 cut(s) 70
BstV1I GCAGC 2 cut(s) 224, 343
BsuRI GGCC 1 cut(s) 377
BtsCI GGATG 2 cut(s) 297, 429
BtsI GCAGTG 1 cut(s) 53
BtsIMutI CAGTG 1 cut(s) 53
CaiI CAGNNNCTG 1 cut(s) 359
Cfr10I RCCGGY 1 cut(s) 434
Cfr13I GGNCC 1 cut(s) 540
CsiI ACCWGGT 1 cut(s) 520
Csp6I GTAC 2 cut(s) 67, 427
CspAI ACCGGT 1 cut(s) 434
CspCI CAANNNNNGTGG 2 cut(s) 532, 567
CviAII CATG 4 cut(s) 155, 224, 302, 603
CviQI GTAC 2 cut(s) 67, 427
DdeI CTNAG 2 cut(s) 388, 536
Eam1104I CTCTTC 1 cut(s) 338
EarI CTCTTC 1 cut(s) 338
Eco130I CCWWGG 3 cut(s) 141, 192, 259
Eco147I AGGCCT 1 cut(s) 377
Eco47I GGWCC 1 cut(s) 540
EcoRII CCWGG 2 cut(s) 505, 520
EcoT14I CCWWGG 3 cut(s) 141, 192, 259
ErhI CCWWGG 3 cut(s) 141, 192, 259
FaeI CATG 4 cut(s) 158, 227, 305, 606
FaiI YATR 8 cut(s) 84, 156, 225, 288, 303, 309, 513, 604
FatI CATG 4 cut(s) 154, 223, 301, 602
FauI CCCGC 1 cut(s) 115
Fnu4HI GCNGC 3 cut(s) 76, 213, 357
FokI GGATG 2 cut(s) 304, 436
Fsp4HI GCNGC 3 cut(s) 76, 213, 357
FspBI CTAG 6 cut(s) 87, 219, 279, 393, 455, 459
GluI GCNGC 3 cut(s) 76, 213, 357
HaeIII GGCC 1 cut(s) 377
HapII CCGG 1 cut(s) 435
Hin1II CATG 4 cut(s) 158, 227, 305, 606
HinfI GANTC 4 cut(s) 10, 188, 255, 622
HpaII CCGG 1 cut(s) 435
HphI GGTGA 1 cut(s) 422
Hpy188III TCNNGA 1 cut(s) 595
HpyAV CCTTC 3 cut(s) 107, 388, 512
HpyCH4V TGCA 7 cut(s) 51, 60, 138, 167, 212, 419, 554
HpyF10VI GCNNNNNNNGC 4 cut(s) 57, 128, 164, 323
HpyF3I CTNAG 2 cut(s) 388, 536
Hsp92II CATG 4 cut(s) 158, 227, 305, 606
LmnI GCTCC 3 cut(s) 220, 397, 586
LpnPI CCDG 6 cut(s) 345, 448, 492, 507, 519, 534
Lsp1109I GCAGC 2 cut(s) 224, 343
LweI GCATC 1 cut(s) 586
MabI ACCWGGT 1 cut(s) 520
MaeI CTAG 6 cut(s) 87, 219, 279, 393, 455, 459
MaeIII GTNAC 2 cut(s) 145, 524
MboII GAAGA 3 cut(s) 16, 19, 355
MluCI AATT 3 cut(s) 52, 62, 132
MlyI GAGTC 2 cut(s) 249, 631
MmeI TCCRAC 1 cut(s) 17
MnlI CCTC 8 cut(s) 23, 26, 162, 240, 257, 283, 339, 406
MseI TTAA 1 cut(s) 203
MspA1I CMGCKG 2 cut(s) 75, 356
MspI CCGG 1 cut(s) 435
MspR9I CCNGG 2 cut(s) 507, 522
Mva1269I GAATGC 1 cut(s) 214
MvaI CCWGG 2 cut(s) 507, 522
MwoI GCNNNNNNNGC 4 cut(s) 57, 128, 164, 323
NlaIII CATG 4 cut(s) 158, 227, 305, 606
NlaIV GGNNCC 1 cut(s) 588
NspI RCATGY 1 cut(s) 227
PceI AGGCCT 1 cut(s) 377
PciI ACATGT 1 cut(s) 223
PctI GAATGC 1 cut(s) 214
PfeI GAWTC 2 cut(s) 10, 188
PinAI ACCGGT 1 cut(s) 434
PkrI GCNGC 3 cut(s) 77, 214, 358
PleI GAGTC 2 cut(s) 249, 630
PpsI GAGTC 2 cut(s) 249, 630
PscI ACATGT 1 cut(s) 223
PshBI ATTAAT 1 cut(s) 203
Psp6I CCWGG 2 cut(s) 505, 520
PspGI CCWGG 2 cut(s) 505, 520
PspN4I GGNNCC 1 cut(s) 588
PspPI GGNCC 1 cut(s) 540
PstNI CAGNNNCTG 1 cut(s) 359
PvuII CAGCTG 1 cut(s) 356
RsaI GTAC 2 cut(s) 68, 428
RsaNI GTAC 2 cut(s) 67, 427
SaqAI TTAA 1 cut(s) 203
SatI GCNGC 3 cut(s) 76, 213, 357
Sau96I GGNCC 1 cut(s) 540
SchI GAGTC 2 cut(s) 249, 631
ScrFI CCNGG 2 cut(s) 507, 522
SexAI ACCWGGT 1 cut(s) 520
SfaNI GCATC 1 cut(s) 586
SfcI CTRYAG 1 cut(s) 70
SgrAI CRCCGGYG 1 cut(s) 434
SinI GGWCC 1 cut(s) 540
SpeI ACTAGT 1 cut(s) 278
Sse9I AATT 3 cut(s) 52, 62, 132
SseBI AGGCCT 1 cut(s) 377
SsiI CCGC 2 cut(s) 75, 122
SspI AATATT 1 cut(s) 571
SspMI CTAG 6 cut(s) 87, 219, 279, 393, 455, 459
StuI AGGCCT 1 cut(s) 377
StyD4I CCNGG 2 cut(s) 505, 520
StyI CCWWGG 3 cut(s) 141, 192, 259
TaqI TCGA 1 cut(s) 475
TasI AATT 3 cut(s) 52, 62, 132
TatI WGTACW 2 cut(s) 66, 426
TauI GCSGC 1 cut(s) 78
TfiI GAWTC 2 cut(s) 10, 188
Tru1I TTAA 1 cut(s) 203
Tru9I TTAA 1 cut(s) 203
TscAI CASTG 1 cut(s) 53
TseI GCWGC 2 cut(s) 212, 356
TspDTI ATGAA 2 cut(s) 17, 221
TspRI CASTG 1 cut(s) 53
VpaK11BI GGWCC 1 cut(s) 540
VspI ATTAAT 1 cut(s) 203
XceI RCATGY 1 cut(s) 227
XspI CTAG 6 cut(s) 87, 219, 279, 393, 455, 459
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.