Rroxscaffold_4G00299640

hAT family C-terminal dimerisation region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000421
Physical Location & Seq
Forward (+)
19584457 .. 19586894
2438 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00299640.1

Sequence Viewer

Length: 891 bp
ATGAGTTGCTATGGGATGACATTGATTACATCATTTCTTTTACTGAGCCTATCTATGAGATGCTCGGAAAGCGGACACGATAGGCCTTCTCTTCATTTAGTGTATGAATGGTGGGATAGTATGATTGAGCAAGTGAAGAAGGCTATCTATAGGAAAGAAAGGAAGCAACCTCATGAAGAGTCTCCATTTTGGGATGCGGTGTATAAGGTTCTAATGGCTCGTTGGTCCAAGAGCAATACTTCTCTCAATTGCTTGGCACATTCATTGAATCCGAAGTATTATAGTTCGGAATGGCTTAGTGAAGATACTAATCGGGTTGCTCCCCACAAAGATTTAGAGATTACAAGGGAGAGGAAAAATTGTATCCTTAGATACTTTGCCAATGAAGATGACCGAAGGAAAGTTAACATAGAATTTGCTAATTTTTCTATGTGTATGCAAGAGTTTGGAAGTGGAGATGCTATGAAGGATAGGTTTATTATGGAGCCTATAACATGGTGGGCTGTCCATGGAGCTTCGGCTCCATCTCTCCAAGCCATAGCCTTCAAGGTTCTAGGTCAACCTTGTTCTTCTTCATGTTGTGAAAGAAATTGGAGTACTTACAATTTCATTCACTCTGTGAGGAGGAACAAGATAACACCACAACGAGCGGAAGATTTGGTGTTTGTGCATACCAATCTTCGCCTTTTAGCTAGGAGAAGCCCAAGTTACAATGAAAGTGCAACTCAAATGTGGGATGTTGGAGGTGATGAGTTTGATTCTTTAGAAGAGTCTAATGTTGGAAGGCTTGAGATTGCTAACCTTTCACTTGATGAACCACAATTAGAGCGGGTTTTGTTTAATGTTGATGATGAAGATGAAGACCTTGAGGATGTTGTCCAAGTTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Dimer_Tnp_hAT

Protein Analysis

296

Amino Acids

34.46

Weight (kDa)

5.23

Isoelectric Point (pI)

52.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dimer_Tnp_hAT PF05699 160 - 227 1.4e-12 hAT family C-terminal dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000421)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G08267
fragaria_vesca FvH4_2g14331 FvH4_2g16371 FvH4_2g26163 FvH4_3g42540 FvH4_4g02102 FvH4_4g12491 FvH4_4g35171 FvH4_5g06632 FvH4_5g06632 FvH4_5g06632 FvH4_5g08811 FvH4_5g08812 FvH4_5g23531 FvH4_6g10272 FvH4_6g40844 FvH4_7g16803 FvH4_7g16804
malus_domestica MD11G1099500.v1.1 MD17G1176800.v1.1
pyrus_communis pycom05g07840 pycom06g08730 pycom07g12010 pycom07g12020 pycom10g07270 pycom11g17470 pycom12g10610 pycom12g14240 pycom13g22040 pycom15g02440
rosa_chinensis RchiOBHm_Chr1g0371321 RchiOBHm_Chr2g0102701 RchiOBHm_Chr3g0465681 RchiOBHm_Chr4g0420941 RchiOBHm_Chr4g0434271 RchiOBHm_Chr4g0442721 RchiOBHm_Chr6g0262081 RchiOBHm_Chr6g0278171 RchiOBHm_Chr6g0294991 RchiOBHm_Chr6g0295001 RchiOBHm_Chr7g0205361 RchiOBHm_Chr7g0205371 RchiOBHm_Chr7g0223471
rosa_laevigata RLG00000005266
rosa_multiflora Rmu_sc0000493.1_g000033 Rmu_sc0000493.1_g000034 Rmu_sc0000507.1_g000007 Rmu_sc0000843.1_g000001 Rmu_sc0001075.1_g000033 Rmu_sc0002077.1_g000007 Rmu_sc0002077.1_g000008 Rmu_sc0002329.1_g000029 Rmu_sc0002539.1_g000077 Rmu_sc0002655.1_g000006 Rmu_sc0003127.1_g000020 Rmu_sc0003765.1_g000054 Rmu_sc0004368.1_g000023 Rmu_sc0004753.1_g000022 Rmu_sc0005297.1_g000014 Rmu_sc0007633.1_g000010 Rmu_sc0008164.1_g000005 Rmu_sc0008191.1_g000003 Rmu_sc0017900.1_g000005 Rmu_sc0022727.1_g000002
rosa_roxburghii Rroxscaffold_2G00079920 Rroxscaffold_3G00255890 Rroxscaffold_4G00295340 Rroxscaffold_4G00296360 Rroxscaffold_4G00299640 Rroxscaffold_6G00388210
rosa_rugosa Rorug02G0466700 Rorug04G0123200 Rorug05G0074800 Rorug07G0202900
rosa_samantha Rh1DG134700 Rh3CG159000 Rh4AG331000 Rh5AG521100 Rh5BG136400 Rh5DG127300 Rh5DG383100 Rh5DG386100 Rh5DG458000 Rh6CG450400 Rh7CG233800 Rh7DG407100
rosa_wichuraiana Rw1G004960 Rw1G005730 Rw1G006360 Rw1G017400 Rw2G013190 Rw2G022210 Rw2G029640 Rw5G020910 Rw5G036930 Rw6G016200 Rw7G018170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 650, 829
AciI CCGC 4 cut(s) 72, 197, 650, 829
AcsI RAATTY 1 cut(s) 413
AdeI CACNNNGTG 1 cut(s) 619
AfaI GTAC 1 cut(s) 598
AgsI TTSAA 3 cut(s) 268, 547, 887
AluBI AGCT 2 cut(s) 515, 692
AluI AGCT 2 cut(s) 515, 692
Alw26I GTCTC 1 cut(s) 186
AoxI GGCC 1 cut(s) 83
ApoI RAATTY 1 cut(s) 413
AspS9I GGNCC 1 cut(s) 225
AsuHPI GGTGA 1 cut(s) 758
AvaII GGWCC 1 cut(s) 225
BbsI GAAGAC 1 cut(s) 867
BccI CCATC 1 cut(s) 532
BciVI GTATCC 1 cut(s) 374
BcoDI GTCTC 1 cut(s) 186
BfaI CTAG 2 cut(s) 554, 693
BfmI CTRYAG 1 cut(s) 148
BfuI GTATCC 1 cut(s) 374
BmcAI AGTACT 1 cut(s) 598
Bme18I GGWCC 1 cut(s) 225
BmgT120I GGNCC 1 cut(s) 225
BmiI GGNNCC 2 cut(s) 486, 522
BmsI GCATC 3 cut(s) 50, 184, 448
BpiI GAAGAC 1 cut(s) 867
BpuEI CTTGAG 2 cut(s) 809, 887
BsaBI GATNNNNATC 1 cut(s) 309
BsaJI CCNNGG 1 cut(s) 508
Bse8I GATNNNNATC 1 cut(s) 309
BseDI CCNNGG 1 cut(s) 508
BseGI GGATG 4 cut(s) 21, 199, 742, 877
BseJI GATNNNNATC 1 cut(s) 309
BseMII CTCAG 1 cut(s) 35
BseRI GAGGAG 1 cut(s) 637
BshFI GGCC 1 cut(s) 85
BsmAI GTCTC 1 cut(s) 186
BsnI GGCC 1 cut(s) 85
Bsp19I CCATGG 1 cut(s) 508
BspACI CCGC 4 cut(s) 72, 197, 650, 829
BspANI GGCC 1 cut(s) 85
BspCNI CTCAG 1 cut(s) 36
BspHI TCATGA 1 cut(s) 172
BspLI GGNNCC 2 cut(s) 486, 522
BsrBI CCGCTC 2 cut(s) 650, 829
BssECI CCNNGG 1 cut(s) 508
BssT1I CCWWGG 1 cut(s) 508
Bst6I CTCTTC 3 cut(s) 96, 171, 762
BstDEI CTNAG 3 cut(s) 44, 296, 368
BstDSI CCRYGG 1 cut(s) 508
BstF5I GGATG 4 cut(s) 21, 199, 742, 877
BstMAI GTCTC 1 cut(s) 186
BstMWI GCNNNNNNNGC 1 cut(s) 69
BstSFI CTRYAG 1 cut(s) 148
BstV2I GAAGAC 1 cut(s) 867
BsuI GTATCC 1 cut(s) 374
BsuRI GGCC 1 cut(s) 85
BtgI CCRYGG 1 cut(s) 508
BtsCI GGATG 4 cut(s) 21, 199, 742, 877
CciI TCATGA 1 cut(s) 172
Cfr13I GGNCC 1 cut(s) 225
Csp6I GTAC 1 cut(s) 597
CviAII CATG 4 cut(s) 173, 495, 509, 576
CviQI GTAC 1 cut(s) 597
DdeI CTNAG 3 cut(s) 44, 296, 368
DraIII CACNNNGTG 1 cut(s) 619
Eam1104I CTCTTC 3 cut(s) 96, 171, 762
EarI CTCTTC 3 cut(s) 96, 171, 762
Eco130I CCWWGG 1 cut(s) 508
Eco147I AGGCCT 1 cut(s) 85
Eco47I GGWCC 1 cut(s) 225
EcoT14I CCWWGG 1 cut(s) 508
ErhI CCWWGG 1 cut(s) 508
FaeI CATG 4 cut(s) 176, 498, 512, 579
FatI CATG 4 cut(s) 172, 494, 508, 575
FauI CCCGC 1 cut(s) 822
FokI GGATG 4 cut(s) 28, 206, 749, 884
FspBI CTAG 2 cut(s) 554, 693
HaeIII GGCC 1 cut(s) 85
Hin1II CATG 4 cut(s) 176, 498, 512, 579
HincII GTYRAC 2 cut(s) 406, 560
HindII GTYRAC 2 cut(s) 406, 560
HinfI GANTC 4 cut(s) 179, 268, 758, 770
HpaI GTTAAC 1 cut(s) 406
HphI GGTGA 1 cut(s) 758
Hpy166II GTNNAC 2 cut(s) 406, 560
Hpy188I TCNGA 3 cut(s) 67, 273, 289
Hpy188III TCNNGA 1 cut(s) 173
Hpy8I GTNNAC 2 cut(s) 406, 560
HpyAV CCTTC 6 cut(s) 96, 133, 390, 460, 553, 777
HpyCH4V TGCA 3 cut(s) 439, 670, 722
HpyF10VI GCNNNNNNNGC 1 cut(s) 69
HpyF3I CTNAG 3 cut(s) 44, 296, 368
Hsp92II CATG 4 cut(s) 176, 498, 512, 579
KspAI GTTAAC 1 cut(s) 406
LmnI GCTCC 4 cut(s) 325, 484, 512, 526
LweI GCATC 3 cut(s) 50, 184, 448
MaeI CTAG 2 cut(s) 554, 693
MaeIII GTNAC 1 cut(s) 707
MbiI CCGCTC 2 cut(s) 650, 829
MfeI CAATTG 1 cut(s) 247
MluCI AATT 7 cut(s) 247, 358, 413, 421, 589, 604, 821
MlyI GAGTC 2 cut(s) 188, 779
MmeI TCCRAC 2 cut(s) 721, 760
MnlI CCTC 6 cut(s) 180, 345, 615, 618, 737, 862
MseI TTAA 2 cut(s) 405, 840
MunI CAATTG 1 cut(s) 247
MwoI GCNNNNNNNGC 1 cut(s) 69
NcoI CCATGG 1 cut(s) 508
NlaIII CATG 4 cut(s) 176, 498, 512, 579
NlaIV GGNNCC 2 cut(s) 486, 522
PagI TCATGA 1 cut(s) 172
PceI AGGCCT 1 cut(s) 85
PfeI GAWTC 2 cut(s) 268, 758
PleI GAGTC 2 cut(s) 187, 778
PpsI GAGTC 2 cut(s) 187, 778
PspN4I GGNNCC 2 cut(s) 486, 522
PspPI GGNCC 1 cut(s) 225
RsaI GTAC 1 cut(s) 598
RsaNI GTAC 1 cut(s) 597
SaqAI TTAA 2 cut(s) 405, 840
Sau96I GGNCC 1 cut(s) 225
ScaI AGTACT 1 cut(s) 598
SchI GAGTC 2 cut(s) 188, 779
SfaNI GCATC 3 cut(s) 50, 184, 448
SfcI CTRYAG 1 cut(s) 148
SinI GGWCC 1 cut(s) 225
SmlI CTYRAG 2 cut(s) 788, 866
SmoI CTYRAG 2 cut(s) 788, 866
Sse9I AATT 7 cut(s) 247, 358, 413, 421, 589, 604, 821
SseBI AGGCCT 1 cut(s) 85
SsiI CCGC 4 cut(s) 72, 197, 650, 829
SspMI CTAG 2 cut(s) 554, 693
StuI AGGCCT 1 cut(s) 85
StyI CCWWGG 1 cut(s) 508
TaqII GACCGA 1 cut(s) 408
TasI AATT 7 cut(s) 247, 358, 413, 421, 589, 604, 821
TatI WGTACW 1 cut(s) 596
TfiI GAWTC 2 cut(s) 268, 758
Tru1I TTAA 2 cut(s) 405, 840
Tru9I TTAA 2 cut(s) 405, 840
VpaK11BI GGWCC 1 cut(s) 225
XapI RAATTY 1 cut(s) 413
XspI CTAG 2 cut(s) 554, 693
ZrmI AGTACT 1 cut(s) 598
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.