Rmu_sc0002077.1_g000007

Protein of unknown function (DUF 659)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002077.1
OG0000421
Physical Location & Seq
Reverse (-)
26939 .. 27606
668 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002077.1_g000007.1.cds

Sequence Viewer

Length: 450 bp
atgatgttgaaggctataaactgtcaaggggaattcaaggatcatgcgatgattgcagacttgattatagattccattaaagaagtgggttgggaaaatgtagtgcaagtggtcaccgacaatgctcctgtttgttccaaagccggtgccttgatagcaattgctttcggttgctctcacaaggtttgcatcaacgttaatcatgctaagaggtttaggcaaattaaaaatggtttgcaacagatggtcatcagtccacagtgggatgattacaaagaagatgctgttaggaaggcagcttctatgaaggagaaattattagatgagttgctatgggatgacattgattacatcatttcttttactgagcctatctatgagatgattaggaaagcagacactgataggctctcaggaaagcagacactgataggccttctcttcatttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659

Protein Analysis

149

Amino Acids

16.87

Weight (kDa)

5.59

Isoelectric Point (pI)

22.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000421)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G08267
fragaria_vesca FvH4_2g14331 FvH4_2g16371 FvH4_2g26163 FvH4_3g42540 FvH4_4g02102 FvH4_4g12491 FvH4_4g35171 FvH4_5g06632 FvH4_5g06632 FvH4_5g06632 FvH4_5g08811 FvH4_5g08812 FvH4_5g23531 FvH4_6g10272 FvH4_6g40844 FvH4_7g16803 FvH4_7g16804
malus_domestica MD11G1099500.v1.1 MD17G1176800.v1.1
pyrus_communis pycom05g07840 pycom06g08730 pycom07g12010 pycom07g12020 pycom10g07270 pycom11g17470 pycom12g10610 pycom12g14240 pycom13g22040 pycom15g02440
rosa_chinensis RchiOBHm_Chr1g0371321 RchiOBHm_Chr2g0102701 RchiOBHm_Chr3g0465681 RchiOBHm_Chr4g0420941 RchiOBHm_Chr4g0434271 RchiOBHm_Chr4g0442721 RchiOBHm_Chr6g0262081 RchiOBHm_Chr6g0278171 RchiOBHm_Chr6g0294991 RchiOBHm_Chr6g0295001 RchiOBHm_Chr7g0205361 RchiOBHm_Chr7g0205371 RchiOBHm_Chr7g0223471
rosa_laevigata RLG00000005266
rosa_multiflora Rmu_sc0000493.1_g000033 Rmu_sc0000493.1_g000034 Rmu_sc0000507.1_g000007 Rmu_sc0000843.1_g000001 Rmu_sc0001075.1_g000033 Rmu_sc0002077.1_g000007 Rmu_sc0002077.1_g000008 Rmu_sc0002329.1_g000029 Rmu_sc0002539.1_g000077 Rmu_sc0002655.1_g000006 Rmu_sc0003127.1_g000020 Rmu_sc0003765.1_g000054 Rmu_sc0004368.1_g000023 Rmu_sc0004753.1_g000022 Rmu_sc0005297.1_g000014 Rmu_sc0007633.1_g000010 Rmu_sc0008164.1_g000005 Rmu_sc0008191.1_g000003 Rmu_sc0017900.1_g000005 Rmu_sc0022727.1_g000002
rosa_roxburghii Rroxscaffold_2G00079920 Rroxscaffold_3G00255890 Rroxscaffold_4G00295340 Rroxscaffold_4G00296360 Rroxscaffold_4G00299640 Rroxscaffold_6G00388210
rosa_rugosa Rorug02G0466700 Rorug04G0123200 Rorug05G0074800 Rorug07G0202900
rosa_samantha Rh1DG134700 Rh3CG159000 Rh4AG331000 Rh5AG521100 Rh5BG136400 Rh5DG127300 Rh5DG383100 Rh5DG386100 Rh5DG458000 Rh6CG450400 Rh7CG233800 Rh7DG407100
rosa_wichuraiana Rw1G004960 Rw1G005730 Rw1G006360 Rw1G017400 Rw2G013190 Rw2G022210 Rw2G029640 Rw5G020910 Rw5G036930 Rw6G016200 Rw7G018170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 146
AclI AACGTT 1 cut(s) 195
AclWI GGATC 1 cut(s) 48
AcsI RAATTY 1 cut(s) 32
AgsI TTSAA 2 cut(s) 10, 37
AluBI AGCT 1 cut(s) 299
AluI AGCT 1 cut(s) 299
AlwI GGATC 1 cut(s) 48
AlwNI CAGNNNCTG 2 cut(s) 401, 427
AoxI GGCC 1 cut(s) 433
ApeKI GCWGC 1 cut(s) 296
ApoI RAATTY 1 cut(s) 32
AsuHPI GGTGA 1 cut(s) 106
BanI GGYRCC 1 cut(s) 146
BbvI GCAGC 1 cut(s) 308
BccI CCATC 1 cut(s) 238
BisI GCNGC 1 cut(s) 297
BlsI GCNGC 1 cut(s) 298
BmiI GGNNCC 1 cut(s) 148
BmsI GCATC 2 cut(s) 198, 271
BsaBI GATNNNNATC 1 cut(s) 248
Bse118I RCCGGY 1 cut(s) 143
Bse8I GATNNNNATC 1 cut(s) 248
BseGI GGATG 2 cut(s) 271, 343
BseJI GATNNNNATC 1 cut(s) 248
BseMII CTCAG 2 cut(s) 357, 426
BseXI GCAGC 1 cut(s) 308
BshFI GGCC 1 cut(s) 435
BshNI GGYRCC 1 cut(s) 146
BsiSI CCGG 1 cut(s) 144
BsnI GGCC 1 cut(s) 435
Bsp143I GATC 1 cut(s) 40
BspANI GGCC 1 cut(s) 435
BspCNI CTCAG 2 cut(s) 358, 425
BspLI GGNNCC 1 cut(s) 148
BspPI GGATC 1 cut(s) 48
BspT107I GGYRCC 1 cut(s) 146
BsrFI RCCGGY 1 cut(s) 143
BssAI RCCGGY 1 cut(s) 143
BssMI GATC 1 cut(s) 40
Bst4CI ACNGT 2 cut(s) 23, 261
Bst6I CTCTTC 1 cut(s) 446
BstDEI CTNAG 3 cut(s) 207, 366, 412
BstEII GGTNACC 1 cut(s) 112
BstF5I GGATG 2 cut(s) 271, 343
BstKTI GATC 1 cut(s) 43
BstMBI GATC 1 cut(s) 40
BstMWI GCNNNNNNNGC 2 cut(s) 53, 155
BstPI GGTNACC 1 cut(s) 112
BstV1I GCAGC 1 cut(s) 308
BsuRI GGCC 1 cut(s) 435
BtgZI GCGATG 1 cut(s) 62
BtsCI GGATG 2 cut(s) 271, 343
BtsIMutI CAGTG 3 cut(s) 266, 399, 425
CaiI CAGNNNCTG 2 cut(s) 401, 427
Cfr10I RCCGGY 1 cut(s) 143
CviAII CATG 2 cut(s) 44, 203
CviJI RGCY 6 cut(s) 14, 143, 299, 370, 409, 435
CviKI_1 RGCY 6 cut(s) 14, 143, 299, 370, 409, 435
DdeI CTNAG 3 cut(s) 207, 366, 412
DpnI GATC 1 cut(s) 42
DpnII GATC 1 cut(s) 40
Eam1104I CTCTTC 1 cut(s) 446
EarI CTCTTC 1 cut(s) 446
Eco147I AGGCCT 1 cut(s) 435
Eco91I GGTNACC 1 cut(s) 112
EcoO65I GGTNACC 1 cut(s) 112
EcoRI GAATTC 1 cut(s) 32
FaeI CATG 2 cut(s) 47, 206
FaiI YATR 7 cut(s) 17, 45, 68, 204, 305, 334, 378
FatI CATG 2 cut(s) 43, 202
Fnu4HI GCNGC 1 cut(s) 297
FokI GGATG 2 cut(s) 278, 350
Fsp4HI GCNGC 1 cut(s) 297
GluI GCNGC 1 cut(s) 297
HaeIII GGCC 1 cut(s) 435
HapII CCGG 1 cut(s) 144
Hin1II CATG 2 cut(s) 47, 206
HinfI GANTC 1 cut(s) 71
HpaII CCGG 1 cut(s) 144
HphI GGTGA 1 cut(s) 106
Hpy166II GTNNAC 1 cut(s) 257
Hpy188III TCNNGA 1 cut(s) 414
Hpy8I GTNNAC 1 cut(s) 257
HpyAV CCTTC 4 cut(s) 4, 286, 301, 446
HpyCH4III ACNGT 2 cut(s) 23, 261
HpyCH4IV ACGT 1 cut(s) 195
HpyCH4V TGCA 4 cut(s) 56, 106, 189, 238
HpyF10VI GCNNNNNNNGC 2 cut(s) 53, 155
HpyF3I CTNAG 3 cut(s) 207, 366, 412
HpySE526I ACGT 1 cut(s) 195
Hsp92II CATG 2 cut(s) 47, 206
Kzo9I GATC 1 cut(s) 40
LmnI GCTCC 1 cut(s) 130
LpnPI CCDG 3 cut(s) 141, 157, 399
Lsp1109I GCAGC 1 cut(s) 308
LweI GCATC 2 cut(s) 198, 271
MaeII ACGT 1 cut(s) 195
MaeIII GTNAC 1 cut(s) 112
MalI GATC 1 cut(s) 42
MboI GATC 1 cut(s) 40
MboII GAAGA 2 cut(s) 290, 433
MfeI CAATTG 1 cut(s) 159
MluCI AATT 4 cut(s) 32, 159, 222, 314
MnlI CCTC 1 cut(s) 204
MseI TTAA 3 cut(s) 78, 198, 225
MspI CCGG 1 cut(s) 144
MunI CAATTG 1 cut(s) 159
MwoI GCNNNNNNNGC 2 cut(s) 53, 155
NdeII GATC 1 cut(s) 40
NlaIII CATG 2 cut(s) 47, 206
NlaIV GGNNCC 1 cut(s) 148
NmuCI GTSAC 1 cut(s) 112
PceI AGGCCT 1 cut(s) 435
PfeI GAWTC 1 cut(s) 71
PkrI GCNGC 1 cut(s) 298
Psp1406I AACGTT 1 cut(s) 195
PspEI GGTNACC 1 cut(s) 112
PspN4I GGNNCC 1 cut(s) 148
PstNI CAGNNNCTG 2 cut(s) 401, 427
SaqAI TTAA 3 cut(s) 78, 198, 225
SatI GCNGC 1 cut(s) 297
Sau3AI GATC 1 cut(s) 40
SetI ASST 4 cut(s) 186, 198, 215, 301
SfaNI GCATC 2 cut(s) 198, 271
Sse9I AATT 4 cut(s) 32, 159, 222, 314
SseBI AGGCCT 1 cut(s) 435
StuI AGGCCT 1 cut(s) 435
TaaI ACNGT 2 cut(s) 23, 261
TaiI ACGT 1 cut(s) 198
TasI AATT 4 cut(s) 32, 159, 222, 314
TfiI GAWTC 1 cut(s) 71
Tru1I TTAA 3 cut(s) 78, 198, 225
Tru9I TTAA 3 cut(s) 78, 198, 225
TscAI CASTG 3 cut(s) 266, 406, 432
TseFI GTSAC 1 cut(s) 112
TseI GCWGC 1 cut(s) 296
Tsp45I GTSAC 1 cut(s) 112
TspDTI ATGAA 2 cut(s) 320, 433
TspRI CASTG 3 cut(s) 266, 406, 432
XapI RAATTY 1 cut(s) 32
XcmI CCANNNNNNNNNTGG 1 cut(s) 82
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.