RchiOBHm_Chr4g0434271

Encoded by

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Reverse (-)
58096761 .. 58099873
3113 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ40273

Sequence Viewer

Length: 1596 bp
ATGATGGGGTTGAAGCTTGAAGATTGGACCAGCAATTCTCTGAAGACTACTTCGCATCTCTGTTTGTTGCTTGATGGGAAGATGAGCGATGCAAATGTAACAGCAACAGCAACAGCAACAGCAACAGCAACAGCAACAGATTCATCTACTAATGAGGGTGAACCCAGTGGAAGTGTGGGAGATAATAATAAGGGTTCTCCTTTGTGGAAATTTGTTACGGTCCTTGTTCAACCTAAGAAAGGTGAAGGAGGCAATTGTACATTCAAGTGTCATTTTTGCAATGCTTGTGAATCTGGACCTATGTTTTTGAGAGCAGTGAACTGTGAAGGGGATTCGAAAGACAGGTTCTTCATTTCTGACTTGCTCATTGATAGTATTTTGGAGATTGGTCCACAACATGTTGTCCAGGTAATCACTGATAATGCTAGCAATTGCAAAGCTGCTGGAGCTATTATTAATGCTAGATTTCCACACATATTTTGGACTCCATGTGTTGTGCATACACTAAACCTTGCTTTGAAGAACATATGCACACCAAGTTCCATTACTTCTAATAAGGTTGCTTATGATGCATGTAATTGGATTTCACAAGTTGCTGAGGATGTGTGGTTCATAAAGAATTTCATTATGAACCATGGTATGAGGTTGGCTATGTTTAATGAGCACTCCCACTTGAAGATGTTATCCATTGCTGATACACGCTTTGCATCCATTGGCCGTGAAAGACTGATATTAGATGATGATGCTTGGGCAAAGATTGATTACATACTTGCCTTCACATTACCCATCTATGAGATGCTTAGGAGGAGTGATACGGATGAGCCATGTGTTCACAAGGTTTATGAGTGGTGGGATGCTATGATTGAGCAAGTAAAGGCCGCTATCTATAAACAAGAAGGCAAAGAACATGAAGAGCCTTCGGAATTTTATGATGTGGTGTACACGATTTTGCTAGCAAGATGGACCAAGAGTTCCTCACCTCTTCATTGCACGGCACATTCATTGAATCCAAGATATTATAGCATGGAATATCTTCATGGAGCTCCTAATCGTCTTCCTCCACATCAAGATAGTGAGATTTCTAAGGAAAGAAAAGAATGTCTTAAGAAATACTATGCTAATGAAGAGGAAAGACGAAGTGTGAATGAGGAGTTTGCCTCTTTTTCGGCATGCTTGGATGAATTTGCAAGTAGTGATTCTATCAATGATAGAGGTAAGATGCCACCAATGAAATGGTGGGTTGTCCATGGATCTAGTACACCAAATCTCCAAAGGTTAGCTTTAAAGCTACTAGGACAACCTTGTTCCTCCTCATGTTGTGAAAGAAATTGGAGCACCTACAAGTTTATTCACTCTTTGAGGAGGAATAGGATTACACCACAAAGAGCCGAAGATTTGGTGTTTGTGCACAATAATCTTCGGCTTTTATCAAGGAGAACTCCACAATACAAATGTGGAGAGATGTGGGATATTGGAGGGGATGATTTTGACTCAATGGATACGGTTAATGGAGGCATTCTTGAGGTTGCCAACCTCTCTCTTGATGAACCGGAATTGGAGGGTGTAATCTTTGATGATGAGGATGAAGTTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

531

Amino Acids

60.02

Weight (kDa)

5.34

Isoelectric Point (pI)

49.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF659 PF04937 91 - 202 1.8e-27 Domain of unknown function (DUF659)
Dimer_Tnp_hAT PF05699 392 - 473 2.7e-16 hAT family C-terminal dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000421)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G08267
fragaria_vesca FvH4_2g14331 FvH4_2g16371 FvH4_2g26163 FvH4_3g42540 FvH4_4g02102 FvH4_4g12491 FvH4_4g35171 FvH4_5g06632 FvH4_5g06632 FvH4_5g06632 FvH4_5g08811 FvH4_5g08812 FvH4_5g23531 FvH4_6g10272 FvH4_6g40844 FvH4_7g16803 FvH4_7g16804
malus_domestica MD11G1099500.v1.1 MD17G1176800.v1.1
pyrus_communis pycom05g07840 pycom06g08730 pycom07g12010 pycom07g12020 pycom10g07270 pycom11g17470 pycom12g10610 pycom12g14240 pycom13g22040 pycom15g02440
rosa_chinensis RchiOBHm_Chr1g0371321 RchiOBHm_Chr2g0102701 RchiOBHm_Chr3g0465681 RchiOBHm_Chr4g0420941 RchiOBHm_Chr4g0434271 RchiOBHm_Chr4g0442721 RchiOBHm_Chr6g0262081 RchiOBHm_Chr6g0278171 RchiOBHm_Chr6g0294991 RchiOBHm_Chr6g0295001 RchiOBHm_Chr7g0205361 RchiOBHm_Chr7g0205371 RchiOBHm_Chr7g0223471
rosa_laevigata RLG00000005266
rosa_multiflora Rmu_sc0000493.1_g000033 Rmu_sc0000493.1_g000034 Rmu_sc0000507.1_g000007 Rmu_sc0000843.1_g000001 Rmu_sc0001075.1_g000033 Rmu_sc0002077.1_g000007 Rmu_sc0002077.1_g000008 Rmu_sc0002329.1_g000029 Rmu_sc0002539.1_g000077 Rmu_sc0002655.1_g000006 Rmu_sc0003127.1_g000020 Rmu_sc0003765.1_g000054 Rmu_sc0004368.1_g000023 Rmu_sc0004753.1_g000022 Rmu_sc0005297.1_g000014 Rmu_sc0007633.1_g000010 Rmu_sc0008164.1_g000005 Rmu_sc0008191.1_g000003 Rmu_sc0017900.1_g000005 Rmu_sc0022727.1_g000002
rosa_roxburghii Rroxscaffold_2G00079920 Rroxscaffold_3G00255890 Rroxscaffold_4G00295340 Rroxscaffold_4G00296360 Rroxscaffold_4G00299640 Rroxscaffold_6G00388210
rosa_rugosa Rorug02G0466700 Rorug04G0123200 Rorug05G0074800 Rorug07G0202900
rosa_samantha Rh1DG134700 Rh3CG159000 Rh4AG331000 Rh5AG521100 Rh5BG136400 Rh5DG127300 Rh5DG383100 Rh5DG386100 Rh5DG458000 Rh6CG450400 Rh7CG233800 Rh7DG407100
rosa_wichuraiana Rw1G004960 Rw1G005730 Rw1G006360 Rw1G017400 Rw2G013190 Rw2G022210 Rw2G029640 Rw5G020910 Rw5G036930 Rw6G016200 Rw7G018170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 879
AclWI GGATC 1 cut(s) 1258
AcoI YGGCCR 1 cut(s) 715
AcsI RAATTY 4 cut(s) 209, 619, 923, 1181
AcuI CTGAAG 1 cut(s) 62
AfaI GTAC 3 cut(s) 259, 941, 1258
AfiI CCNNNNNNNGG 1 cut(s) 239
AflII CTTAAG 1 cut(s) 1103
AflIII ACRYGT 1 cut(s) 397
AgsI TTSAA 7 cut(s) 13, 20, 230, 265, 520, 676, 1006
AjnI CCWGG 1 cut(s) 405
AloI GAACNNNNNNTCC 4 cut(s) 593, 625, 955, 987
AluBI AGCT 6 cut(s) 16, 440, 449, 1043, 1280, 1288
AluI AGCT 6 cut(s) 16, 440, 449, 1043, 1280, 1288
Alw21I GWGCWC 4 cut(s) 666, 1045, 1337, 1410
Alw44I GTGCAC 1 cut(s) 1406
AlwI GGATC 1 cut(s) 1258
AoxI GGCC 2 cut(s) 715, 876
ApaLI GTGCAC 1 cut(s) 1406
ApeKI GCWGC 1 cut(s) 440
ApoI RAATTY 4 cut(s) 209, 619, 923, 1181
AseI ATTAAT 1 cut(s) 456
Asp700I GAANNNNTTC 1 cut(s) 1032
AspS9I GGNCC 5 cut(s) 27, 220, 296, 389, 963
AsuHPI GGTGA 3 cut(s) 170, 254, 969
AsuII TTCGAA 1 cut(s) 335
AsuNHI GCTAGC 2 cut(s) 425, 952
AvaII GGWCC 5 cut(s) 27, 220, 296, 389, 963
BaeGI GKGCMC 1 cut(s) 1410
BanII GRGCYC 1 cut(s) 1045
BbsI GAAGAC 2 cut(s) 50, 1046
Bbv12I GWGCWC 4 cut(s) 666, 1045, 1337, 1410
BbvCI CCTCAGC 1 cut(s) 597
BbvI GCAGC 1 cut(s) 427
BccI CCATC 3 cut(s) 68, 794, 954
BceAI ACGGC 2 cut(s) 702, 1008
BciT130I CCWGG 1 cut(s) 407
BciVI GTATCC 1 cut(s) 1492
BfaI CTAG 5 cut(s) 426, 462, 953, 1254, 1292
BfrI CTTAAG 1 cut(s) 1103
BfuI GTATCC 1 cut(s) 1492
BisI GCNGC 2 cut(s) 441, 879
BlsI GCNGC 2 cut(s) 442, 880
Bme1390I CCNGG 1 cut(s) 407
Bme18I GGWCC 5 cut(s) 27, 220, 296, 389, 963
BmgT120I GGNCC 5 cut(s) 27, 220, 296, 389, 963
BmrFI CCNGG 1 cut(s) 407
BmrI ACTGGG 1 cut(s) 159
BmsI GCATC 8 cut(s) 64, 79, 559, 716, 733, 786, 844, 1209
BmtI GCTAGC 2 cut(s) 429, 956
BmuI ACTGGG 1 cut(s) 159
BpiI GAAGAC 2 cut(s) 50, 1046
BplI GAGNNNNNCTC 2 cut(s) 1142, 1174
BpmI CTGGAG 1 cut(s) 465
Bpu10I CCTNAGC 2 cut(s) 597, 800
Bpu14I TTCGAA 1 cut(s) 335
BpuEI CTTGAG 1 cut(s) 1541
BsaJI CCNNGG 2 cut(s) 634, 1246
BsaWI WCCGGW 1 cut(s) 1549
BsaXI ACNNNNNCTCC 2 cut(s) 1251, 1281
Bsc4I CCNNNNNNNGG 1 cut(s) 239
Bse1I ACTGG 1 cut(s) 165
Bse3DI GCAATG 3 cut(s) 286, 687, 985
BseBI CCWGG 1 cut(s) 407
BseDI CCNNGG 2 cut(s) 634, 1246
BseGI GGATG 7 cut(s) 607, 707, 823, 859, 1183, 1486, 1588
BseLI CCNNNNNNNGG 1 cut(s) 239
BseMI GCAATG 3 cut(s) 286, 687, 985
BseMII CTCAG 1 cut(s) 588
BseNI ACTGG 1 cut(s) 165
BseRI GAGGAG 4 cut(s) 820, 1163, 1300, 1375
BseSI GKGCMC 1 cut(s) 1410
BseXI GCAGC 1 cut(s) 427
BshFI GGCC 2 cut(s) 717, 878
BsiHKAI GWGCWC 4 cut(s) 666, 1045, 1337, 1410
BsiSI CCGG 1 cut(s) 1550
BslI CCNNNNNNNGG 1 cut(s) 239
BsmI GAATGC 1 cut(s) 1515
BsnI GGCC 2 cut(s) 717, 878
Bsp119I TTCGAA 1 cut(s) 335
Bsp1286I GDGCHC 4 cut(s) 666, 1045, 1337, 1410
Bsp1407I TGTACA 2 cut(s) 257, 939
Bsp143I GATC 1 cut(s) 1250
Bsp19I CCATGG 2 cut(s) 634, 1246
BspACI CCGC 1 cut(s) 879
BspANI GGCC 2 cut(s) 717, 878
BspCNI CTCAG 1 cut(s) 589
BspOI GCTAGC 2 cut(s) 429, 956
BspPI GGATC 1 cut(s) 1258
BspQI GCTCTTC 1 cut(s) 906
BspT104I TTCGAA 1 cut(s) 335
BspTI CTTAAG 1 cut(s) 1103
BsrDI GCAATG 3 cut(s) 286, 687, 985
BsrGI TGTACA 2 cut(s) 257, 939
BsrI ACTGG 1 cut(s) 165
BssECI CCNNGG 2 cut(s) 634, 1246
BssMI GATC 1 cut(s) 1250
BssT1I CCWWGG 2 cut(s) 634, 1246
Bst2UI CCWGG 1 cut(s) 407
Bst4CI ACNGT 3 cut(s) 220, 323, 1504
Bst6I CTCTTC 3 cut(s) 906, 987, 1119
BstAFI CTTAAG 1 cut(s) 1103
BstAUI TGTACA 2 cut(s) 257, 939
BstBI TTCGAA 1 cut(s) 335
BstC8I GCNNGC 3 cut(s) 427, 954, 1171
BstDEI CTNAG 4 cut(s) 234, 597, 800, 1083
BstDSI CCRYGG 2 cut(s) 634, 1246
BstENI CCTNNNNNAGG 1 cut(s) 237
BstF5I GGATG 7 cut(s) 607, 707, 823, 859, 1183, 1486, 1588
BstKTI GATC 1 cut(s) 1253
BstMBI GATC 1 cut(s) 1250
BstMWI GCNNNNNNNGC 2 cut(s) 446, 569
BstNI CCWGG 1 cut(s) 407
BstNSI RCATGY 3 cut(s) 401, 576, 1173
BstSCI CCNGG 1 cut(s) 405
BstSLI GKGCMC 1 cut(s) 1410
BstV1I GCAGC 1 cut(s) 427
BstV2I GAAGAC 2 cut(s) 50, 1046
BstX2I RGATCY 1 cut(s) 1250
BstXI CCANNNNNNTGG 1 cut(s) 1233
BstYI RGATCY 1 cut(s) 1250
BsuI GTATCC 1 cut(s) 1492
BsuRI GGCC 2 cut(s) 717, 878
BtgI CCRYGG 2 cut(s) 634, 1246
BtgZI GCGATG 1 cut(s) 102
BtsCI GGATG 7 cut(s) 607, 707, 823, 859, 1183, 1486, 1588
BtsI GCAGTG 1 cut(s) 321
BtsIMutI CAGTG 3 cut(s) 172, 321, 414
Cac8I GCNNGC 3 cut(s) 427, 954, 1171
Cfr13I GGNCC 5 cut(s) 27, 220, 296, 389, 963
Csp6I GTAC 3 cut(s) 258, 940, 1257
CviQI GTAC 3 cut(s) 258, 940, 1257
DdeI CTNAG 4 cut(s) 234, 597, 800, 1083
DpnI GATC 1 cut(s) 1252
DpnII GATC 1 cut(s) 1250
DraI TTTAAA 1 cut(s) 1284
EaeI YGGCCR 1 cut(s) 715
Eam1104I CTCTTC 3 cut(s) 906, 987, 1119
EarI CTCTTC 3 cut(s) 906, 987, 1119
Ecl136II GAGCTC 1 cut(s) 1043
Eco130I CCWWGG 2 cut(s) 634, 1246
Eco24I GRGCYC 1 cut(s) 1045
Eco47I GGWCC 5 cut(s) 27, 220, 296, 389, 963
Eco53kI GAGCTC 1 cut(s) 1043
Eco57I CTGAAG 1 cut(s) 62
EcoICRI GAGCTC 1 cut(s) 1043
EcoNI CCTNNNNNAGG 1 cut(s) 237
EcoRII CCWGG 1 cut(s) 405
EcoT14I CCWWGG 2 cut(s) 634, 1246
EcoT22I ATGCAT 1 cut(s) 574
EcoT38I GRGCYC 1 cut(s) 1045
ErhI CCWWGG 2 cut(s) 634, 1246
FalI AAGNNNNNCTT 4 cut(s) 1086, 1118, 1264, 1296
FauNDI CATATG 1 cut(s) 527
Fnu4HI GCNGC 2 cut(s) 441, 879
FokI GGATG 6 cut(s) 614, 694, 830, 866, 1190, 1493
FriOI GRGCYC 1 cut(s) 1045
Fsp4HI GCNGC 2 cut(s) 441, 879
FspBI CTAG 5 cut(s) 426, 462, 953, 1254, 1292
GluI GCNGC 2 cut(s) 441, 879
GsuI CTGGAG 1 cut(s) 465
HaeIII GGCC 2 cut(s) 717, 878
HapII CCGG 1 cut(s) 1550
HindIII AAGCTT 1 cut(s) 14
HinfI GANTC 7 cut(s) 140, 290, 332, 484, 1006, 1196, 1490
HpaII CCGG 1 cut(s) 1550
HphI GGTGA 3 cut(s) 170, 254, 969
Hpy166II GTNNAC 8 cut(s) 161, 319, 392, 832, 940, 942, 1259, 1408
Hpy188I TCNGA 3 cut(s) 42, 358, 922
Hpy188III TCNNGA 4 cut(s) 294, 1067, 1520, 1541
Hpy8I GTNNAC 8 cut(s) 161, 319, 392, 832, 940, 942, 1259, 1408
HpyAV CCTTC 5 cut(s) 239, 320, 784, 890, 927
HpyCH4III ACNGT 3 cut(s) 220, 323, 1504
HpyF10VI GCNNNNNNNGC 2 cut(s) 446, 569
HpyF3I CTNAG 4 cut(s) 234, 597, 800, 1083
Kzo9I GATC 1 cut(s) 1250
LguI GCTCTTC 1 cut(s) 906
LmnI GCTCC 4 cut(s) 446, 1040, 1048, 1332
LpnPI CCDG 8 cut(s) 43, 178, 279, 328, 392, 419, 429, 1563
Lsp1109I GCAGC 1 cut(s) 427
LweI GCATC 8 cut(s) 64, 79, 559, 716, 733, 786, 844, 1209
MaeI CTAG 5 cut(s) 426, 462, 953, 1254, 1292
MaeIII GTNAC 2 cut(s) 97, 214
MalI GATC 1 cut(s) 1252
MboI GATC 1 cut(s) 1250
MfeI CAATTG 2 cut(s) 253, 430
MflI RGATCY 1 cut(s) 1250
MhlI GDGCHC 4 cut(s) 666, 1045, 1337, 1410
MlyI GAGTC 2 cut(s) 478, 1484
Mph1103I ATGCAT 1 cut(s) 574
MroXI GAANNNNTTC 1 cut(s) 1032
MseI TTAA 5 cut(s) 456, 657, 1104, 1283, 1506
MslI CAYNNNNRTG 1 cut(s) 265
MspCI CTTAAG 1 cut(s) 1103
MspI CCGG 1 cut(s) 1550
MspR9I CCNGG 1 cut(s) 407
MunI CAATTG 2 cut(s) 253, 430
Mva1269I GAATGC 1 cut(s) 1515
MvaI CCWGG 1 cut(s) 407
MwoI GCNNNNNNNGC 2 cut(s) 446, 569
NcoI CCATGG 2 cut(s) 634, 1246
NdeI CATATG 1 cut(s) 527
NdeII GATC 1 cut(s) 1250
NheI GCTAGC 2 cut(s) 425, 952
NsiI ATGCAT 1 cut(s) 574
NspI RCATGY 3 cut(s) 401, 576, 1173
NspV TTCGAA 1 cut(s) 335
PaeI GCATGC 1 cut(s) 1173
PciI ACATGT 1 cut(s) 397
PciSI GCTCTTC 1 cut(s) 906
PctI GAATGC 1 cut(s) 1515
PdmI GAANNNNTTC 1 cut(s) 1032
PfeI GAWTC 5 cut(s) 140, 290, 332, 1006, 1196
PkrI GCNGC 2 cut(s) 442, 880
PleI GAGTC 2 cut(s) 478, 1484
PpsI GAGTC 2 cut(s) 478, 1484
PscI ACATGT 1 cut(s) 397
PshBI ATTAAT 1 cut(s) 456
Psp124BI GAGCTC 1 cut(s) 1045
Psp6I CCWGG 1 cut(s) 405
PspGI CCWGG 1 cut(s) 405
PspPI GGNCC 5 cut(s) 27, 220, 296, 389, 963
PsuI RGATCY 1 cut(s) 1250
RsaI GTAC 3 cut(s) 259, 941, 1258
RsaNI GTAC 3 cut(s) 258, 940, 1257
RseI CAYNNNNRTG 1 cut(s) 265
SacI GAGCTC 1 cut(s) 1045
SapI GCTCTTC 1 cut(s) 906
SaqAI TTAA 5 cut(s) 456, 657, 1104, 1283, 1506
SatI GCNGC 2 cut(s) 441, 879
Sau3AI GATC 1 cut(s) 1250
Sau96I GGNCC 5 cut(s) 27, 220, 296, 389, 963
SchI GAGTC 2 cut(s) 478, 1484
ScrFI CCNGG 1 cut(s) 407
SduI GDGCHC 4 cut(s) 666, 1045, 1337, 1410
SfaNI GCATC 8 cut(s) 64, 79, 559, 716, 733, 786, 844, 1209
SfuI TTCGAA 1 cut(s) 335
SinI GGWCC 5 cut(s) 27, 220, 296, 389, 963
SmiMI CAYNNNNRTG 1 cut(s) 265
SmlI CTYRAG 2 cut(s) 1103, 1520
SmoI CTYRAG 2 cut(s) 1103, 1520
SphI GCATGC 1 cut(s) 1173
SsiI CCGC 1 cut(s) 879
SspMI CTAG 5 cut(s) 426, 462, 953, 1254, 1292
SstI GAGCTC 1 cut(s) 1045
StyD4I CCNGG 1 cut(s) 405
StyI CCWWGG 2 cut(s) 634, 1246
TaaI ACNGT 3 cut(s) 220, 323, 1504
TaqI TCGA 1 cut(s) 335
TatI WGTACW 3 cut(s) 257, 939, 1256
TauI GCSGC 1 cut(s) 881
TfiI GAWTC 5 cut(s) 140, 290, 332, 1006, 1196
Tru1I TTAA 5 cut(s) 456, 657, 1104, 1283, 1506
Tru9I TTAA 5 cut(s) 456, 657, 1104, 1283, 1506
TscAI CASTG 3 cut(s) 172, 321, 421
TseI GCWGC 1 cut(s) 440
TspGWI ACGGA 1 cut(s) 830
TspRI CASTG 3 cut(s) 172, 321, 421
Vha464I CTTAAG 1 cut(s) 1103
VneI GTGCAC 1 cut(s) 1406
VpaK11BI GGWCC 5 cut(s) 27, 220, 296, 389, 963
VspI ATTAAT 1 cut(s) 456
XagI CCTNNNNNAGG 1 cut(s) 237
XapI RAATTY 4 cut(s) 209, 619, 923, 1181
XceI RCATGY 3 cut(s) 401, 576, 1173
XcmI CCANNNNNNNNNTGG 4 cut(s) 172, 477, 1230, 1233
XmnI GAANNNNTTC 1 cut(s) 1032
XspI CTAG 5 cut(s) 426, 462, 953, 1254, 1292
Zsp2I ATGCAT 1 cut(s) 574
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.