Encoded by
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 879 |
| AclWI | GGATC | 1 cut(s) | 1258 |
| AcoI | YGGCCR | 1 cut(s) | 715 |
| AcsI | RAATTY | 4 cut(s) | 209, 619, 923, 1181 |
| AcuI | CTGAAG | 1 cut(s) | 62 |
| AfaI | GTAC | 3 cut(s) | 259, 941, 1258 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 239 |
| AflII | CTTAAG | 1 cut(s) | 1103 |
| AflIII | ACRYGT | 1 cut(s) | 397 |
| AgsI | TTSAA | 7 cut(s) | 13, 20, 230, 265, 520, 676, 1006 |
| AjnI | CCWGG | 1 cut(s) | 405 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 593, 625, 955, 987 |
| AluBI | AGCT | 6 cut(s) | 16, 440, 449, 1043, 1280, 1288 |
| AluI | AGCT | 6 cut(s) | 16, 440, 449, 1043, 1280, 1288 |
| Alw21I | GWGCWC | 4 cut(s) | 666, 1045, 1337, 1410 |
| Alw44I | GTGCAC | 1 cut(s) | 1406 |
| AlwI | GGATC | 1 cut(s) | 1258 |
| AoxI | GGCC | 2 cut(s) | 715, 876 |
| ApaLI | GTGCAC | 1 cut(s) | 1406 |
| ApeKI | GCWGC | 1 cut(s) | 440 |
| ApoI | RAATTY | 4 cut(s) | 209, 619, 923, 1181 |
| AseI | ATTAAT | 1 cut(s) | 456 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1032 |
| AspS9I | GGNCC | 5 cut(s) | 27, 220, 296, 389, 963 |
| AsuHPI | GGTGA | 3 cut(s) | 170, 254, 969 |
| AsuII | TTCGAA | 1 cut(s) | 335 |
| AsuNHI | GCTAGC | 2 cut(s) | 425, 952 |
| AvaII | GGWCC | 5 cut(s) | 27, 220, 296, 389, 963 |
| BaeGI | GKGCMC | 1 cut(s) | 1410 |
| BanII | GRGCYC | 1 cut(s) | 1045 |
| BbsI | GAAGAC | 2 cut(s) | 50, 1046 |
| Bbv12I | GWGCWC | 4 cut(s) | 666, 1045, 1337, 1410 |
| BbvCI | CCTCAGC | 1 cut(s) | 597 |
| BbvI | GCAGC | 1 cut(s) | 427 |
| BccI | CCATC | 3 cut(s) | 68, 794, 954 |
| BceAI | ACGGC | 2 cut(s) | 702, 1008 |
| BciT130I | CCWGG | 1 cut(s) | 407 |
| BciVI | GTATCC | 1 cut(s) | 1492 |
| BfaI | CTAG | 5 cut(s) | 426, 462, 953, 1254, 1292 |
| BfrI | CTTAAG | 1 cut(s) | 1103 |
| BfuI | GTATCC | 1 cut(s) | 1492 |
| BisI | GCNGC | 2 cut(s) | 441, 879 |
| BlsI | GCNGC | 2 cut(s) | 442, 880 |
| Bme1390I | CCNGG | 1 cut(s) | 407 |
| Bme18I | GGWCC | 5 cut(s) | 27, 220, 296, 389, 963 |
| BmgT120I | GGNCC | 5 cut(s) | 27, 220, 296, 389, 963 |
| BmrFI | CCNGG | 1 cut(s) | 407 |
| BmrI | ACTGGG | 1 cut(s) | 159 |
| BmsI | GCATC | 8 cut(s) | 64, 79, 559, 716, 733, 786, 844, 1209 |
| BmtI | GCTAGC | 2 cut(s) | 429, 956 |
| BmuI | ACTGGG | 1 cut(s) | 159 |
| BpiI | GAAGAC | 2 cut(s) | 50, 1046 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1142, 1174 |
| BpmI | CTGGAG | 1 cut(s) | 465 |
| Bpu10I | CCTNAGC | 2 cut(s) | 597, 800 |
| Bpu14I | TTCGAA | 1 cut(s) | 335 |
| BpuEI | CTTGAG | 1 cut(s) | 1541 |
| BsaJI | CCNNGG | 2 cut(s) | 634, 1246 |
| BsaWI | WCCGGW | 1 cut(s) | 1549 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1251, 1281 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 239 |
| Bse1I | ACTGG | 1 cut(s) | 165 |
| Bse3DI | GCAATG | 3 cut(s) | 286, 687, 985 |
| BseBI | CCWGG | 1 cut(s) | 407 |
| BseDI | CCNNGG | 2 cut(s) | 634, 1246 |
| BseGI | GGATG | 7 cut(s) | 607, 707, 823, 859, 1183, 1486, 1588 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 239 |
| BseMI | GCAATG | 3 cut(s) | 286, 687, 985 |
| BseMII | CTCAG | 1 cut(s) | 588 |
| BseNI | ACTGG | 1 cut(s) | 165 |
| BseRI | GAGGAG | 4 cut(s) | 820, 1163, 1300, 1375 |
| BseSI | GKGCMC | 1 cut(s) | 1410 |
| BseXI | GCAGC | 1 cut(s) | 427 |
| BshFI | GGCC | 2 cut(s) | 717, 878 |
| BsiHKAI | GWGCWC | 4 cut(s) | 666, 1045, 1337, 1410 |
| BsiSI | CCGG | 1 cut(s) | 1550 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 239 |
| BsmI | GAATGC | 1 cut(s) | 1515 |
| BsnI | GGCC | 2 cut(s) | 717, 878 |
| Bsp119I | TTCGAA | 1 cut(s) | 335 |
| Bsp1286I | GDGCHC | 4 cut(s) | 666, 1045, 1337, 1410 |
| Bsp1407I | TGTACA | 2 cut(s) | 257, 939 |
| Bsp143I | GATC | 1 cut(s) | 1250 |
| Bsp19I | CCATGG | 2 cut(s) | 634, 1246 |
| BspACI | CCGC | 1 cut(s) | 879 |
| BspANI | GGCC | 2 cut(s) | 717, 878 |
| BspCNI | CTCAG | 1 cut(s) | 589 |
| BspOI | GCTAGC | 2 cut(s) | 429, 956 |
| BspPI | GGATC | 1 cut(s) | 1258 |
| BspQI | GCTCTTC | 1 cut(s) | 906 |
| BspT104I | TTCGAA | 1 cut(s) | 335 |
| BspTI | CTTAAG | 1 cut(s) | 1103 |
| BsrDI | GCAATG | 3 cut(s) | 286, 687, 985 |
| BsrGI | TGTACA | 2 cut(s) | 257, 939 |
| BsrI | ACTGG | 1 cut(s) | 165 |
| BssECI | CCNNGG | 2 cut(s) | 634, 1246 |
| BssMI | GATC | 1 cut(s) | 1250 |
| BssT1I | CCWWGG | 2 cut(s) | 634, 1246 |
| Bst2UI | CCWGG | 1 cut(s) | 407 |
| Bst4CI | ACNGT | 3 cut(s) | 220, 323, 1504 |
| Bst6I | CTCTTC | 3 cut(s) | 906, 987, 1119 |
| BstAFI | CTTAAG | 1 cut(s) | 1103 |
| BstAUI | TGTACA | 2 cut(s) | 257, 939 |
| BstBI | TTCGAA | 1 cut(s) | 335 |
| BstC8I | GCNNGC | 3 cut(s) | 427, 954, 1171 |
| BstDEI | CTNAG | 4 cut(s) | 234, 597, 800, 1083 |
| BstDSI | CCRYGG | 2 cut(s) | 634, 1246 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 237 |
| BstF5I | GGATG | 7 cut(s) | 607, 707, 823, 859, 1183, 1486, 1588 |
| BstKTI | GATC | 1 cut(s) | 1253 |
| BstMBI | GATC | 1 cut(s) | 1250 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 446, 569 |
| BstNI | CCWGG | 1 cut(s) | 407 |
| BstNSI | RCATGY | 3 cut(s) | 401, 576, 1173 |
| BstSCI | CCNGG | 1 cut(s) | 405 |
| BstSLI | GKGCMC | 1 cut(s) | 1410 |
| BstV1I | GCAGC | 1 cut(s) | 427 |
| BstV2I | GAAGAC | 2 cut(s) | 50, 1046 |
| BstX2I | RGATCY | 1 cut(s) | 1250 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1233 |
| BstYI | RGATCY | 1 cut(s) | 1250 |
| BsuI | GTATCC | 1 cut(s) | 1492 |
| BsuRI | GGCC | 2 cut(s) | 717, 878 |
| BtgI | CCRYGG | 2 cut(s) | 634, 1246 |
| BtgZI | GCGATG | 1 cut(s) | 102 |
| BtsCI | GGATG | 7 cut(s) | 607, 707, 823, 859, 1183, 1486, 1588 |
| BtsI | GCAGTG | 1 cut(s) | 321 |
| BtsIMutI | CAGTG | 3 cut(s) | 172, 321, 414 |
| Cac8I | GCNNGC | 3 cut(s) | 427, 954, 1171 |
| Cfr13I | GGNCC | 5 cut(s) | 27, 220, 296, 389, 963 |
| Csp6I | GTAC | 3 cut(s) | 258, 940, 1257 |
| CviQI | GTAC | 3 cut(s) | 258, 940, 1257 |
| DdeI | CTNAG | 4 cut(s) | 234, 597, 800, 1083 |
| DpnI | GATC | 1 cut(s) | 1252 |
| DpnII | GATC | 1 cut(s) | 1250 |
| DraI | TTTAAA | 1 cut(s) | 1284 |
| EaeI | YGGCCR | 1 cut(s) | 715 |
| Eam1104I | CTCTTC | 3 cut(s) | 906, 987, 1119 |
| EarI | CTCTTC | 3 cut(s) | 906, 987, 1119 |
| Ecl136II | GAGCTC | 1 cut(s) | 1043 |
| Eco130I | CCWWGG | 2 cut(s) | 634, 1246 |
| Eco24I | GRGCYC | 1 cut(s) | 1045 |
| Eco47I | GGWCC | 5 cut(s) | 27, 220, 296, 389, 963 |
| Eco53kI | GAGCTC | 1 cut(s) | 1043 |
| Eco57I | CTGAAG | 1 cut(s) | 62 |
| EcoICRI | GAGCTC | 1 cut(s) | 1043 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 237 |
| EcoRII | CCWGG | 1 cut(s) | 405 |
| EcoT14I | CCWWGG | 2 cut(s) | 634, 1246 |
| EcoT22I | ATGCAT | 1 cut(s) | 574 |
| EcoT38I | GRGCYC | 1 cut(s) | 1045 |
| ErhI | CCWWGG | 2 cut(s) | 634, 1246 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1086, 1118, 1264, 1296 |
| FauNDI | CATATG | 1 cut(s) | 527 |
| Fnu4HI | GCNGC | 2 cut(s) | 441, 879 |
| FokI | GGATG | 6 cut(s) | 614, 694, 830, 866, 1190, 1493 |
| FriOI | GRGCYC | 1 cut(s) | 1045 |
| Fsp4HI | GCNGC | 2 cut(s) | 441, 879 |
| FspBI | CTAG | 5 cut(s) | 426, 462, 953, 1254, 1292 |
| GluI | GCNGC | 2 cut(s) | 441, 879 |
| GsuI | CTGGAG | 1 cut(s) | 465 |
| HaeIII | GGCC | 2 cut(s) | 717, 878 |
| HapII | CCGG | 1 cut(s) | 1550 |
| HindIII | AAGCTT | 1 cut(s) | 14 |
| HinfI | GANTC | 7 cut(s) | 140, 290, 332, 484, 1006, 1196, 1490 |
| HpaII | CCGG | 1 cut(s) | 1550 |
| HphI | GGTGA | 3 cut(s) | 170, 254, 969 |
| Hpy166II | GTNNAC | 8 cut(s) | 161, 319, 392, 832, 940, 942, 1259, 1408 |
| Hpy188I | TCNGA | 3 cut(s) | 42, 358, 922 |
| Hpy188III | TCNNGA | 4 cut(s) | 294, 1067, 1520, 1541 |
| Hpy8I | GTNNAC | 8 cut(s) | 161, 319, 392, 832, 940, 942, 1259, 1408 |
| HpyAV | CCTTC | 5 cut(s) | 239, 320, 784, 890, 927 |
| HpyCH4III | ACNGT | 3 cut(s) | 220, 323, 1504 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 446, 569 |
| HpyF3I | CTNAG | 4 cut(s) | 234, 597, 800, 1083 |
| Kzo9I | GATC | 1 cut(s) | 1250 |
| LguI | GCTCTTC | 1 cut(s) | 906 |
| LmnI | GCTCC | 4 cut(s) | 446, 1040, 1048, 1332 |
| LpnPI | CCDG | 8 cut(s) | 43, 178, 279, 328, 392, 419, 429, 1563 |
| Lsp1109I | GCAGC | 1 cut(s) | 427 |
| LweI | GCATC | 8 cut(s) | 64, 79, 559, 716, 733, 786, 844, 1209 |
| MaeI | CTAG | 5 cut(s) | 426, 462, 953, 1254, 1292 |
| MaeIII | GTNAC | 2 cut(s) | 97, 214 |
| MalI | GATC | 1 cut(s) | 1252 |
| MboI | GATC | 1 cut(s) | 1250 |
| MfeI | CAATTG | 2 cut(s) | 253, 430 |
| MflI | RGATCY | 1 cut(s) | 1250 |
| MhlI | GDGCHC | 4 cut(s) | 666, 1045, 1337, 1410 |
| MlyI | GAGTC | 2 cut(s) | 478, 1484 |
| Mph1103I | ATGCAT | 1 cut(s) | 574 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1032 |
| MseI | TTAA | 5 cut(s) | 456, 657, 1104, 1283, 1506 |
| MslI | CAYNNNNRTG | 1 cut(s) | 265 |
| MspCI | CTTAAG | 1 cut(s) | 1103 |
| MspI | CCGG | 1 cut(s) | 1550 |
| MspR9I | CCNGG | 1 cut(s) | 407 |
| MunI | CAATTG | 2 cut(s) | 253, 430 |
| Mva1269I | GAATGC | 1 cut(s) | 1515 |
| MvaI | CCWGG | 1 cut(s) | 407 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 446, 569 |
| NcoI | CCATGG | 2 cut(s) | 634, 1246 |
| NdeI | CATATG | 1 cut(s) | 527 |
| NdeII | GATC | 1 cut(s) | 1250 |
| NheI | GCTAGC | 2 cut(s) | 425, 952 |
| NsiI | ATGCAT | 1 cut(s) | 574 |
| NspI | RCATGY | 3 cut(s) | 401, 576, 1173 |
| NspV | TTCGAA | 1 cut(s) | 335 |
| PaeI | GCATGC | 1 cut(s) | 1173 |
| PciI | ACATGT | 1 cut(s) | 397 |
| PciSI | GCTCTTC | 1 cut(s) | 906 |
| PctI | GAATGC | 1 cut(s) | 1515 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1032 |
| PfeI | GAWTC | 5 cut(s) | 140, 290, 332, 1006, 1196 |
| PkrI | GCNGC | 2 cut(s) | 442, 880 |
| PleI | GAGTC | 2 cut(s) | 478, 1484 |
| PpsI | GAGTC | 2 cut(s) | 478, 1484 |
| PscI | ACATGT | 1 cut(s) | 397 |
| PshBI | ATTAAT | 1 cut(s) | 456 |
| Psp124BI | GAGCTC | 1 cut(s) | 1045 |
| Psp6I | CCWGG | 1 cut(s) | 405 |
| PspGI | CCWGG | 1 cut(s) | 405 |
| PspPI | GGNCC | 5 cut(s) | 27, 220, 296, 389, 963 |
| PsuI | RGATCY | 1 cut(s) | 1250 |
| RsaI | GTAC | 3 cut(s) | 259, 941, 1258 |
| RsaNI | GTAC | 3 cut(s) | 258, 940, 1257 |
| RseI | CAYNNNNRTG | 1 cut(s) | 265 |
| SacI | GAGCTC | 1 cut(s) | 1045 |
| SapI | GCTCTTC | 1 cut(s) | 906 |
| SaqAI | TTAA | 5 cut(s) | 456, 657, 1104, 1283, 1506 |
| SatI | GCNGC | 2 cut(s) | 441, 879 |
| Sau3AI | GATC | 1 cut(s) | 1250 |
| Sau96I | GGNCC | 5 cut(s) | 27, 220, 296, 389, 963 |
| SchI | GAGTC | 2 cut(s) | 478, 1484 |
| ScrFI | CCNGG | 1 cut(s) | 407 |
| SduI | GDGCHC | 4 cut(s) | 666, 1045, 1337, 1410 |
| SfaNI | GCATC | 8 cut(s) | 64, 79, 559, 716, 733, 786, 844, 1209 |
| SfuI | TTCGAA | 1 cut(s) | 335 |
| SinI | GGWCC | 5 cut(s) | 27, 220, 296, 389, 963 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 265 |
| SmlI | CTYRAG | 2 cut(s) | 1103, 1520 |
| SmoI | CTYRAG | 2 cut(s) | 1103, 1520 |
| SphI | GCATGC | 1 cut(s) | 1173 |
| SsiI | CCGC | 1 cut(s) | 879 |
| SspMI | CTAG | 5 cut(s) | 426, 462, 953, 1254, 1292 |
| SstI | GAGCTC | 1 cut(s) | 1045 |
| StyD4I | CCNGG | 1 cut(s) | 405 |
| StyI | CCWWGG | 2 cut(s) | 634, 1246 |
| TaaI | ACNGT | 3 cut(s) | 220, 323, 1504 |
| TaqI | TCGA | 1 cut(s) | 335 |
| TatI | WGTACW | 3 cut(s) | 257, 939, 1256 |
| TauI | GCSGC | 1 cut(s) | 881 |
| TfiI | GAWTC | 5 cut(s) | 140, 290, 332, 1006, 1196 |
| Tru1I | TTAA | 5 cut(s) | 456, 657, 1104, 1283, 1506 |
| Tru9I | TTAA | 5 cut(s) | 456, 657, 1104, 1283, 1506 |
| TscAI | CASTG | 3 cut(s) | 172, 321, 421 |
| TseI | GCWGC | 1 cut(s) | 440 |
| TspGWI | ACGGA | 1 cut(s) | 830 |
| TspRI | CASTG | 3 cut(s) | 172, 321, 421 |
| Vha464I | CTTAAG | 1 cut(s) | 1103 |
| VneI | GTGCAC | 1 cut(s) | 1406 |
| VpaK11BI | GGWCC | 5 cut(s) | 27, 220, 296, 389, 963 |
| VspI | ATTAAT | 1 cut(s) | 456 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 237 |
| XapI | RAATTY | 4 cut(s) | 209, 619, 923, 1181 |
| XceI | RCATGY | 3 cut(s) | 401, 576, 1173 |
| XcmI | CCANNNNNNNNNTGG | 4 cut(s) | 172, 477, 1230, 1233 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1032 |
| XspI | CTAG | 5 cut(s) | 426, 462, 953, 1254, 1292 |
| Zsp2I | ATGCAT | 1 cut(s) | 574 |