Rroxscaffold_4G00296360

Protein of unknown function (DUF 659)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000421
Physical Location & Seq
Forward (+)
16419380 .. 16421572
2193 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00296360.1

Sequence Viewer

Length: 699 bp
ATGAAAGCATCGAATCCCCAAGACCCCACGGACTTCGGAGATCTATTCGCTGAAAAGAATCCCCAACAGATTTCAAAGAAAACCATAGAATTATGGAAGCATCAAATTGTTACCGAGTACCGGACCTTCATCGGTGGTGTTCTTGATCGTAGTGCCAAGCCTCCATTCTCGCAATACCGCAGCTCCGATGAGGCGATGAAAGAAAATTATGAAGATGTCGGTGAGTATGACGACAATAATTCTGTTGAAGAAACTCAATCAAGTGCTGCAGATCAATCATCAAGTAGAAACACTCAAGACCAAGCTCAAGAATCCCAAGAAATTCCAATGAATTCTGATGTAAAGCCATTACTCAATGAAGTTGTTATCACAGGTGGAGCGCAAGGCAAAAATCCGGGTGGAGCAAAGTCTTGGACATGCAAACATTGCAATGGCAAGTTTAGTAGTTCATATACTCGCATTCACTATCATTTTTTTGGTACTCCCCTTGGAAAAAAATCAGAGATTCGTCGATGTCGAGAATTACTCGCCAATCGGGAGGAATATGAGAGGGTTCGCCGAATGGTTATGGAAGCTGAAAAAAAGGGAGTTTCTTCATCTTTGAAAAATTCAACACTCTTGAGGCAGCAACCAAAAAATCCACCGCGAGTGCTCTTGACGACATGTTCAAGATTATGGACAAAAATTCAGTTGATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT

Protein Analysis

232

Amino Acids

26.38

Weight (kDa)

8.79

Isoelectric Point (pI)

48.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000421)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G08267
fragaria_vesca FvH4_2g14331 FvH4_2g16371 FvH4_2g26163 FvH4_3g42540 FvH4_4g02102 FvH4_4g12491 FvH4_4g35171 FvH4_5g06632 FvH4_5g06632 FvH4_5g06632 FvH4_5g08811 FvH4_5g08812 FvH4_5g23531 FvH4_6g10272 FvH4_6g40844 FvH4_7g16803 FvH4_7g16804
malus_domestica MD11G1099500.v1.1 MD17G1176800.v1.1
pyrus_communis pycom05g07840 pycom06g08730 pycom07g12010 pycom07g12020 pycom10g07270 pycom11g17470 pycom12g10610 pycom12g14240 pycom13g22040 pycom15g02440
rosa_chinensis RchiOBHm_Chr1g0371321 RchiOBHm_Chr2g0102701 RchiOBHm_Chr3g0465681 RchiOBHm_Chr4g0420941 RchiOBHm_Chr4g0434271 RchiOBHm_Chr4g0442721 RchiOBHm_Chr6g0262081 RchiOBHm_Chr6g0278171 RchiOBHm_Chr6g0294991 RchiOBHm_Chr6g0295001 RchiOBHm_Chr7g0205361 RchiOBHm_Chr7g0205371 RchiOBHm_Chr7g0223471
rosa_laevigata RLG00000005266
rosa_multiflora Rmu_sc0000493.1_g000033 Rmu_sc0000493.1_g000034 Rmu_sc0000507.1_g000007 Rmu_sc0000843.1_g000001 Rmu_sc0001075.1_g000033 Rmu_sc0002077.1_g000007 Rmu_sc0002077.1_g000008 Rmu_sc0002329.1_g000029 Rmu_sc0002539.1_g000077 Rmu_sc0002655.1_g000006 Rmu_sc0003127.1_g000020 Rmu_sc0003765.1_g000054 Rmu_sc0004368.1_g000023 Rmu_sc0004753.1_g000022 Rmu_sc0005297.1_g000014 Rmu_sc0007633.1_g000010 Rmu_sc0008164.1_g000005 Rmu_sc0008191.1_g000003 Rmu_sc0017900.1_g000005 Rmu_sc0022727.1_g000002
rosa_roxburghii Rroxscaffold_2G00079920 Rroxscaffold_3G00255890 Rroxscaffold_4G00295340 Rroxscaffold_4G00296360 Rroxscaffold_4G00299640 Rroxscaffold_6G00388210
rosa_rugosa Rorug02G0466700 Rorug04G0123200 Rorug05G0074800 Rorug07G0202900
rosa_samantha Rh1DG134700 Rh3CG159000 Rh4AG331000 Rh5AG521100 Rh5BG136400 Rh5DG127300 Rh5DG383100 Rh5DG386100 Rh5DG458000 Rh6CG450400 Rh7CG233800 Rh7DG407100
rosa_wichuraiana Rw1G004960 Rw1G005730 Rw1G006360 Rw1G017400 Rw2G013190 Rw2G022210 Rw2G029640 Rw5G020910 Rw5G036930 Rw6G016200 Rw7G018170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 646
AciI CCGC 2 cut(s) 178, 644
AcsI RAATTY 4 cut(s) 321, 331, 607, 684
AfaI GTAC 2 cut(s) 119, 481
AfiI CCNNNNNNNGG 1 cut(s) 120
AflIII ACRYGT 1 cut(s) 662
AgsI TTSAA 5 cut(s) 75, 248, 604, 612, 669
AjuI GAANNNNNNNTTGG 2 cut(s) 149, 181
AluBI AGCT 3 cut(s) 183, 305, 575
AluI AGCT 3 cut(s) 183, 305, 575
Alw21I GWGCWC 1 cut(s) 654
ApeKI GCWGC 3 cut(s) 180, 266, 625
ApoI RAATTY 4 cut(s) 321, 331, 607, 684
AspLEI GCGC 1 cut(s) 382
AspS9I GGNCC 1 cut(s) 123
AsuC2I CCSGG 1 cut(s) 396
AsuHPI GGTGA 1 cut(s) 233
AvaII GGWCC 1 cut(s) 123
BarI GAAGNNNNNNTAC 2 cut(s) 110, 142
Bbv12I GWGCWC 1 cut(s) 654
BbvI GCAGC 3 cut(s) 192, 253, 637
BcnI CCSGG 1 cut(s) 396
BfmI CTRYAG 1 cut(s) 267
BglII AGATCT 1 cut(s) 40
BisI GCNGC 3 cut(s) 181, 267, 626
BlsI GCNGC 3 cut(s) 182, 268, 627
Bme1390I CCNGG 1 cut(s) 396
Bme18I GGWCC 1 cut(s) 123
BmgT120I GGNCC 1 cut(s) 123
BmrFI CCNGG 1 cut(s) 396
BmsI GCATC 2 cut(s) 17, 109
BplI GAGNNNNNCTC 2 cut(s) 510, 542
BpuEI CTTGAG 3 cut(s) 279, 291, 640
BpuMI CCSGG 1 cut(s) 396
BsaJI CCNNGG 2 cut(s) 27, 487
BsaWI WCCGGW 1 cut(s) 120
BsaXI ACNNNNNCTCC 2 cut(s) 167, 197
Bsc4I CCNNNNNNNGG 1 cut(s) 120
Bse3DI GCAATG 2 cut(s) 424, 436
BseDI CCNNGG 2 cut(s) 27, 487
BseLI CCNNNNNNNGG 1 cut(s) 120
BseMI GCAATG 2 cut(s) 424, 436
BseXI GCAGC 3 cut(s) 192, 253, 637
Bsh1236I CGCG 1 cut(s) 646
BsiHKAI GWGCWC 1 cut(s) 654
BsiSI CCGG 2 cut(s) 121, 395
BslI CCNNNNNNNGG 1 cut(s) 120
BsmI GAATGC 1 cut(s) 459
Bsp1286I GDGCHC 1 cut(s) 654
Bsp143I GATC 3 cut(s) 40, 145, 271
BspACI CCGC 2 cut(s) 178, 644
BspFNI CGCG 1 cut(s) 646
BspMAI CTGCAG 1 cut(s) 271
BsrDI GCAATG 2 cut(s) 424, 436
BssECI CCNNGG 2 cut(s) 27, 487
BssMI GATC 3 cut(s) 40, 145, 271
BssT1I CCWWGG 1 cut(s) 487
BstAPI GCANNNNNTGC 1 cut(s) 426
BstDSI CCRYGG 1 cut(s) 27
BstFNI CGCG 1 cut(s) 646
BstHHI GCGC 1 cut(s) 382
BstKTI GATC 3 cut(s) 43, 148, 274
BstMBI GATC 3 cut(s) 40, 145, 271
BstMWI GCNNNNNNNGC 1 cut(s) 426
BstNSI RCATGY 2 cut(s) 420, 666
BstSCI CCNGG 1 cut(s) 394
BstSFI CTRYAG 1 cut(s) 267
BstUI CGCG 1 cut(s) 646
BstV1I GCAGC 3 cut(s) 192, 253, 637
BstX2I RGATCY 1 cut(s) 40
BstYI RGATCY 1 cut(s) 40
BtgI CCRYGG 1 cut(s) 27
BtgZI GCGATG 1 cut(s) 209
CfoI GCGC 1 cut(s) 382
Cfr13I GGNCC 1 cut(s) 123
Csp6I GTAC 2 cut(s) 118, 480
CviAII CATG 2 cut(s) 417, 663
CviJI RGCY 5 cut(s) 160, 183, 305, 346, 575
CviKI_1 RGCY 5 cut(s) 160, 183, 305, 346, 575
CviQI GTAC 2 cut(s) 118, 480
DpnI GATC 3 cut(s) 42, 147, 273
DpnII GATC 3 cut(s) 40, 145, 271
Eco130I CCWWGG 1 cut(s) 487
Eco47I GGWCC 1 cut(s) 123
EcoRI GAATTC 1 cut(s) 331
EcoT14I CCWWGG 1 cut(s) 487
ErhI CCWWGG 1 cut(s) 487
FaeI CATG 2 cut(s) 420, 666
FatI CATG 2 cut(s) 416, 662
Fnu4HI GCNGC 3 cut(s) 181, 267, 626
Fsp4HI GCNGC 3 cut(s) 181, 267, 626
GlaI GCGC 1 cut(s) 381
GluI GCNGC 3 cut(s) 181, 267, 626
HapII CCGG 2 cut(s) 121, 395
HhaI GCGC 1 cut(s) 382
Hin1II CATG 2 cut(s) 420, 666
Hin6I GCGC 1 cut(s) 380
HinP1I GCGC 1 cut(s) 380
HinfI GANTC 4 cut(s) 13, 58, 311, 505
HpaII CCGG 2 cut(s) 121, 395
HphI GGTGA 1 cut(s) 233
Hpy188I TCNGA 4 cut(s) 38, 187, 337, 502
Hpy188III TCNNGA 8 cut(s) 143, 296, 308, 518, 536, 619, 655, 669
Hpy99I CGWCG 1 cut(s) 513
HpyAV CCTTC 1 cut(s) 136
HpyCH4V TGCA 3 cut(s) 269, 420, 429
HpyF10VI GCNNNNNNNGC 1 cut(s) 426
Hsp92II CATG 2 cut(s) 420, 666
HspAI GCGC 1 cut(s) 380
Kzo9I GATC 3 cut(s) 40, 145, 271
LmnI GCTCC 3 cut(s) 188, 377, 401
LpnPI CCDG 3 cut(s) 134, 357, 408
Lsp1109I GCAGC 3 cut(s) 192, 253, 637
LweI GCATC 2 cut(s) 17, 109
MaeIII GTNAC 1 cut(s) 109
MalI GATC 3 cut(s) 42, 147, 273
MboI GATC 3 cut(s) 40, 145, 271
MboII GAAGA 3 cut(s) 224, 260, 585
MflI RGATCY 1 cut(s) 40
MhlI GDGCHC 1 cut(s) 654
MluCI AATT 9 cut(s) 89, 105, 205, 238, 321, 331, 521, 607, 684
MnlI CCTC 5 cut(s) 171, 184, 532, 543, 615
MslI CAYNNNNRTG 1 cut(s) 429
MspI CCGG 2 cut(s) 121, 395
MspR9I CCNGG 1 cut(s) 396
Mva1269I GAATGC 1 cut(s) 459
MvnI CGCG 1 cut(s) 646
MwoI GCNNNNNNNGC 1 cut(s) 426
NciI CCSGG 1 cut(s) 396
NdeII GATC 3 cut(s) 40, 145, 271
NlaIII CATG 2 cut(s) 420, 666
NspI RCATGY 2 cut(s) 420, 666
PciI ACATGT 1 cut(s) 662
PcsI WCGNNNNNNNCGW 1 cut(s) 514
PctI GAATGC 1 cut(s) 459
PfeI GAWTC 4 cut(s) 13, 58, 311, 505
PkrI GCNGC 3 cut(s) 182, 268, 627
PscI ACATGT 1 cut(s) 662
PspPI GGNCC 1 cut(s) 123
PstI CTGCAG 1 cut(s) 271
PsuI RGATCY 1 cut(s) 40
RsaI GTAC 2 cut(s) 119, 481
RsaNI GTAC 2 cut(s) 118, 480
RseI CAYNNNNRTG 1 cut(s) 429
SatI GCNGC 3 cut(s) 181, 267, 626
Sau3AI GATC 3 cut(s) 40, 145, 271
Sau96I GGNCC 1 cut(s) 123
ScrFI CCNGG 1 cut(s) 396
SduI GDGCHC 1 cut(s) 654
SetI ASST 5 cut(s) 128, 185, 307, 376, 577
SfaNI GCATC 2 cut(s) 17, 109
SfcI CTRYAG 1 cut(s) 267
SinI GGWCC 1 cut(s) 123
SmiMI CAYNNNNRTG 1 cut(s) 429
SmlI CTYRAG 3 cut(s) 294, 306, 619
SmoI CTYRAG 3 cut(s) 294, 306, 619
Sse9I AATT 9 cut(s) 89, 105, 205, 238, 321, 331, 521, 607, 684
SsiI CCGC 2 cut(s) 178, 644
StyD4I CCNGG 1 cut(s) 394
StyI CCWWGG 1 cut(s) 487
TaqI TCGA 3 cut(s) 11, 511, 517
TasI AATT 9 cut(s) 89, 105, 205, 238, 321, 331, 521, 607, 684
TfiI GAWTC 4 cut(s) 13, 58, 311, 505
TseI GCWGC 3 cut(s) 180, 266, 625
TspDTI ATGAA 8 cut(s) 17, 118, 212, 225, 344, 372, 438, 585
TspGWI ACGGA 1 cut(s) 44
VpaK11BI GGWCC 1 cut(s) 123
XapI RAATTY 4 cut(s) 321, 331, 607, 684
XceI RCATGY 2 cut(s) 420, 666
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.