FvH4_4g35171

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000421
Physical Location & Seq
Forward (+)
32568437 .. 32571943
3507 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g35171.t1

Sequence Viewer

Length: 795 bp
ATGGACCATTGCTCTCAACACGCTGCCGCCGAGTTTCCTCCACCGTCCGGCGACATCTCGAGCTCGCTCCACAGTCCACACTATTCGCGCCCTCTCTCCTTCCTCAACCATAACCCAACTTTGGTTCAGGCGTTCGGGGTCCTCTCCAGTTCGAATCGAATAACGACGAATCTCAACAGCTCCATTACAGTGAGGGTGAGCAAGTCTAAATTTAACAAAAGAAAGGTAGAGAAAGATGTCGAGGAAGAGGTTTTGGTTGTTCATGGAATTGCTGTGAGAATTGATGACTCAACAATCTTGAAGCAACAGCCGCAAAAATCCACTACGAGTGCTATCGGTGACATGGTCAAAATTATGGAGAAAAAAGATGTTGATATGAAGGTGATGAGAGGATTATGTGCTAATGGAATTCCATTCAATGTGTTAAGAAATCCCCAGTCTCATGAGATGATTTCAGCTATAAGTAATGGACGACCCAAGGGTTACAAGGCTCCATCTTATGAAAAACATGAACCACTTATCAACATTATTGCTGCAAACAGTAAAGGAGCTATGTTTTTGTATGCTCACGATTTTTCTGGGATTCCAAAAACCGGTGAGGTGATTGCTGACTTTCTCCTTGCCGCAATTGAAGAGGTGGGATCGTCTAATGTCCTACAGATAGTCACTGATAACGCAGCAAACTGTGAATGTAGTGCTGGGAGAGCGATTGAACAGCGACTTATTGAGTGCAAAGAAGCACTAGCAAGTACGGTAATTCTTCAAAAATGGAAAGAGTGGGTGAAGAGGCGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT

Protein Analysis

265

Amino Acids

29.06

Weight (kDa)

8.74

Isoelectric Point (pI)

47.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF659 PF04937 168 - 240 6.3e-16 Domain of unknown function (DUF659)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000421)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G08267
fragaria_vesca FvH4_2g14331 FvH4_2g16371 FvH4_2g26163 FvH4_3g42540 FvH4_4g02102 FvH4_4g12491 FvH4_4g35171 FvH4_5g06632 FvH4_5g06632 FvH4_5g06632 FvH4_5g08811 FvH4_5g08812 FvH4_5g23531 FvH4_6g10272 FvH4_6g40844 FvH4_7g16803 FvH4_7g16804
malus_domestica MD11G1099500.v1.1 MD17G1176800.v1.1
pyrus_communis pycom05g07840 pycom06g08730 pycom07g12010 pycom07g12020 pycom10g07270 pycom11g17470 pycom12g10610 pycom12g14240 pycom13g22040 pycom15g02440
rosa_chinensis RchiOBHm_Chr1g0371321 RchiOBHm_Chr2g0102701 RchiOBHm_Chr3g0465681 RchiOBHm_Chr4g0420941 RchiOBHm_Chr4g0434271 RchiOBHm_Chr4g0442721 RchiOBHm_Chr6g0262081 RchiOBHm_Chr6g0278171 RchiOBHm_Chr6g0294991 RchiOBHm_Chr6g0295001 RchiOBHm_Chr7g0205361 RchiOBHm_Chr7g0205371 RchiOBHm_Chr7g0223471
rosa_laevigata RLG00000005266
rosa_multiflora Rmu_sc0000493.1_g000033 Rmu_sc0000493.1_g000034 Rmu_sc0000507.1_g000007 Rmu_sc0000843.1_g000001 Rmu_sc0001075.1_g000033 Rmu_sc0002077.1_g000007 Rmu_sc0002077.1_g000008 Rmu_sc0002329.1_g000029 Rmu_sc0002539.1_g000077 Rmu_sc0002655.1_g000006 Rmu_sc0003127.1_g000020 Rmu_sc0003765.1_g000054 Rmu_sc0004368.1_g000023 Rmu_sc0004753.1_g000022 Rmu_sc0005297.1_g000014 Rmu_sc0007633.1_g000010 Rmu_sc0008164.1_g000005 Rmu_sc0008191.1_g000003 Rmu_sc0017900.1_g000005 Rmu_sc0022727.1_g000002
rosa_roxburghii Rroxscaffold_2G00079920 Rroxscaffold_3G00255890 Rroxscaffold_4G00295340 Rroxscaffold_4G00296360 Rroxscaffold_4G00299640 Rroxscaffold_6G00388210
rosa_rugosa Rorug02G0466700 Rorug04G0123200 Rorug05G0074800 Rorug07G0202900
rosa_samantha Rh1DG134700 Rh3CG159000 Rh4AG331000 Rh5AG521100 Rh5BG136400 Rh5DG127300 Rh5DG383100 Rh5DG386100 Rh5DG458000 Rh6CG450400 Rh7CG233800 Rh7DG407100
rosa_wichuraiana Rw1G004960 Rw1G005730 Rw1G006360 Rw1G017400 Rw2G013190 Rw2G022210 Rw2G029640 Rw5G020910 Rw5G036930 Rw6G016200 Rw7G018170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 88
AciI CCGC 3 cut(s) 27, 311, 624
AclWI GGATC 1 cut(s) 649
AcsI RAATTY 2 cut(s) 209, 408
AfaI GTAC 1 cut(s) 751
AfiI CCNNNNNNNGG 3 cut(s) 47, 121, 593
AgeI ACCGGT 1 cut(s) 593
AgsI TTSAA 5 cut(s) 301, 418, 632, 713, 764
AluBI AGCT 4 cut(s) 63, 180, 458, 551
AluI AGCT 4 cut(s) 63, 180, 458, 551
Alw21I GWGCWC 1 cut(s) 65
Alw26I GTCTC 1 cut(s) 444
AlwI GGATC 1 cut(s) 649
Ama87I CYCGRG 1 cut(s) 58
ApeKI GCWGC 3 cut(s) 23, 533, 677
ApoI RAATTY 2 cut(s) 209, 408
AsiGI ACCGGT 1 cut(s) 593
AspLEI GCGC 2 cut(s) 90, 792
AspS9I GGNCC 2 cut(s) 4, 139
AsuHPI GGTGA 6 cut(s) 208, 350, 394, 608, 613, 793
AsuII TTCGAA 1 cut(s) 152
AvaI CYCGRG 1 cut(s) 58
AvaII GGWCC 2 cut(s) 4, 139
BanII GRGCYC 1 cut(s) 65
Bbv12I GWGCWC 1 cut(s) 65
BbvI GCAGC 3 cut(s) 10, 520, 689
BccI CCATC 1 cut(s) 502
BcoDI GTCTC 1 cut(s) 444
BfaI CTAG 1 cut(s) 743
BfmI CTRYAG 1 cut(s) 656
BfoI RGCGCY 1 cut(s) 793
BisI GCNGC 6 cut(s) 24, 27, 311, 534, 624, 678
BlsI GCNGC 6 cut(s) 25, 28, 312, 535, 625, 679
Bme18I GGWCC 2 cut(s) 4, 139
BmeT110I CYCGRG 1 cut(s) 58
BmgT120I GGNCC 2 cut(s) 4, 139
BmiI GGNNCC 2 cut(s) 140, 492
BmrI ACTGGG 1 cut(s) 430
BmuI ACTGGG 1 cut(s) 430
BpmI CTGGAG 1 cut(s) 130
Bpu14I TTCGAA 1 cut(s) 152
BsaJI CCNNGG 1 cut(s) 477
BsaWI WCCGGW 1 cut(s) 593
Bsc4I CCNNNNNNNGG 3 cut(s) 47, 121, 593
Bse118I RCCGGY 1 cut(s) 593
Bse1I ACTGG 2 cut(s) 147, 436
Bse3DI GCAATG 1 cut(s) 7
BseDI CCNNGG 1 cut(s) 477
BseLI CCNNNNNNNGG 3 cut(s) 47, 121, 593
BseMI GCAATG 1 cut(s) 7
BseNI ACTGG 2 cut(s) 147, 436
BseXI GCAGC 3 cut(s) 10, 520, 689
BseYI CCCAGC 1 cut(s) 698
Bsh1236I CGCG 1 cut(s) 88
BshTI ACCGGT 1 cut(s) 593
BsiHKAI GWGCWC 1 cut(s) 65
BsiHKCI CYCGRG 1 cut(s) 58
BsiSI CCGG 2 cut(s) 48, 594
BslI CCNNNNNNNGG 3 cut(s) 47, 121, 593
BsmAI GTCTC 1 cut(s) 444
BsoBI CYCGRG 1 cut(s) 58
Bsp119I TTCGAA 1 cut(s) 152
Bsp1286I GDGCHC 1 cut(s) 65
Bsp143I GATC 1 cut(s) 641
BspACI CCGC 3 cut(s) 27, 311, 624
BspFNI CGCG 1 cut(s) 88
BspHI TCATGA 1 cut(s) 442
BspLI GGNNCC 2 cut(s) 140, 492
BspPI GGATC 1 cut(s) 649
BspT104I TTCGAA 1 cut(s) 152
BsrDI GCAATG 1 cut(s) 7
BsrFI RCCGGY 1 cut(s) 593
BsrI ACTGG 2 cut(s) 147, 436
BssAI RCCGGY 1 cut(s) 593
BssECI CCNNGG 1 cut(s) 477
BssMI GATC 1 cut(s) 641
BssT1I CCWWGG 1 cut(s) 477
Bst4CI ACNGT 6 cut(s) 45, 74, 190, 542, 686, 754
Bst6I CTCTTC 3 cut(s) 240, 627, 779
BstBI TTCGAA 1 cut(s) 152
BstC8I GCNNGC 1 cut(s) 65
BstFNI CGCG 1 cut(s) 88
BstH2I RGCGCY 1 cut(s) 793
BstHHI GCGC 2 cut(s) 90, 792
BstKTI GATC 1 cut(s) 644
BstMAI GTCTC 1 cut(s) 444
BstMBI GATC 1 cut(s) 641
BstMWI GCNNNNNNNGC 2 cut(s) 310, 704
BstSFI CTRYAG 1 cut(s) 656
BstUI CGCG 1 cut(s) 88
BstV1I GCAGC 3 cut(s) 10, 520, 689
BtsIMutI CAGTG 2 cut(s) 195, 666
Cac8I GCNNGC 1 cut(s) 65
CciI TCATGA 1 cut(s) 442
CfoI GCGC 2 cut(s) 90, 792
Cfr10I RCCGGY 1 cut(s) 593
Cfr13I GGNCC 2 cut(s) 4, 139
Csp6I GTAC 1 cut(s) 750
CspAI ACCGGT 1 cut(s) 593
CviAII CATG 4 cut(s) 263, 343, 443, 509
CviJI RGCY 6 cut(s) 63, 180, 310, 458, 491, 551
CviKI_1 RGCY 6 cut(s) 63, 180, 310, 458, 491, 551
CviQI GTAC 1 cut(s) 750
DpnI GATC 1 cut(s) 643
DpnII GATC 1 cut(s) 641
Eam1104I CTCTTC 3 cut(s) 240, 627, 779
EarI CTCTTC 3 cut(s) 240, 627, 779
Ecl136II GAGCTC 1 cut(s) 63
Eco130I CCWWGG 1 cut(s) 477
Eco24I GRGCYC 1 cut(s) 65
Eco47I GGWCC 2 cut(s) 4, 139
Eco53kI GAGCTC 1 cut(s) 63
Eco88I CYCGRG 1 cut(s) 58
EcoICRI GAGCTC 1 cut(s) 63
EcoO109I RGGNCCY 1 cut(s) 139
EcoRI GAATTC 1 cut(s) 408
EcoT14I CCWWGG 1 cut(s) 477
EcoT38I GRGCYC 1 cut(s) 65
ErhI CCWWGG 1 cut(s) 477
FaeI CATG 4 cut(s) 266, 346, 446, 512
FatI CATG 4 cut(s) 262, 342, 442, 508
Fnu4HI GCNGC 6 cut(s) 24, 27, 311, 534, 624, 678
FriOI GRGCYC 1 cut(s) 65
Fsp4HI GCNGC 6 cut(s) 24, 27, 311, 534, 624, 678
FspBI CTAG 1 cut(s) 743
GlaI GCGC 2 cut(s) 89, 791
GluI GCNGC 6 cut(s) 24, 27, 311, 534, 624, 678
GsaI CCCAGC 1 cut(s) 702
GsuI CTGGAG 1 cut(s) 130
HaeII RGCGCY 1 cut(s) 793
HapII CCGG 2 cut(s) 48, 594
HhaI GCGC 2 cut(s) 90, 792
Hin1II CATG 4 cut(s) 266, 346, 446, 512
Hin6I GCGC 2 cut(s) 88, 790
HinP1I GCGC 2 cut(s) 88, 790
HinfI GANTC 4 cut(s) 154, 169, 287, 583
HpaII CCGG 2 cut(s) 48, 594
HphI GGTGA 6 cut(s) 208, 350, 394, 608, 613, 793
Hpy166II GTNNAC 1 cut(s) 77
Hpy188III TCNNGA 4 cut(s) 58, 298, 443, 569
Hpy8I GTNNAC 1 cut(s) 77
Hpy99I CGWCG 1 cut(s) 169
HpyAV CCTTC 2 cut(s) 109, 373
HpyCH4III ACNGT 6 cut(s) 45, 74, 190, 542, 686, 754
HpyCH4V TGCA 2 cut(s) 536, 732
HpyF10VI GCNNNNNNNGC 2 cut(s) 310, 704
Hsp92II CATG 4 cut(s) 266, 346, 446, 512
HspAI GCGC 2 cut(s) 88, 790
Kzo9I GATC 1 cut(s) 641
LmnI GCTCC 4 cut(s) 72, 185, 496, 548
LpnPI CCDG 7 cut(s) 61, 113, 160, 449, 564, 607, 684
Lsp1109I GCAGC 3 cut(s) 10, 520, 689
MaeI CTAG 1 cut(s) 743
MaeIII GTNAC 3 cut(s) 338, 482, 664
MalI GATC 1 cut(s) 643
MboI GATC 1 cut(s) 641
MboII GAAGA 3 cut(s) 257, 644, 752
MfeI CAATTG 1 cut(s) 627
MhlI GDGCHC 1 cut(s) 65
MluCI AATT 7 cut(s) 209, 267, 279, 351, 408, 627, 756
MlyI GAGTC 1 cut(s) 281
MseI TTAA 2 cut(s) 213, 425
MslI CAYNNNNRTG 1 cut(s) 188
MspI CCGG 2 cut(s) 48, 594
MunI CAATTG 1 cut(s) 627
MvnI CGCG 1 cut(s) 88
MwoI GCNNNNNNNGC 2 cut(s) 310, 704
NdeII GATC 1 cut(s) 641
NlaIII CATG 4 cut(s) 266, 346, 446, 512
NlaIV GGNNCC 2 cut(s) 140, 492
NmeAIII GCCGAG 1 cut(s) 55
NmuCI GTSAC 2 cut(s) 338, 664
NspV TTCGAA 1 cut(s) 152
PaeR7I CTCGAG 1 cut(s) 58
PagI TCATGA 1 cut(s) 442
PcsI WCGNNNNNNNCGW 1 cut(s) 27
PfeI GAWTC 3 cut(s) 154, 169, 583
PflFI GACNNNGTC 1 cut(s) 344
PinAI ACCGGT 1 cut(s) 593
PkrI GCNGC 6 cut(s) 25, 28, 312, 535, 625, 679
PleI GAGTC 1 cut(s) 281
PpsI GAGTC 1 cut(s) 281
PpuMI RGGWCCY 1 cut(s) 139
Psp124BI GAGCTC 1 cut(s) 65
Psp5II RGGWCCY 1 cut(s) 139
PspFI CCCAGC 1 cut(s) 698
PspN4I GGNNCC 2 cut(s) 140, 492
PspPI GGNCC 2 cut(s) 4, 139
PspPPI RGGWCCY 1 cut(s) 139
PsyI GACNNNGTC 1 cut(s) 344
RsaI GTAC 1 cut(s) 751
RsaNI GTAC 1 cut(s) 750
RseI CAYNNNNRTG 1 cut(s) 188
SacI GAGCTC 1 cut(s) 65
SaqAI TTAA 2 cut(s) 213, 425
SatI GCNGC 6 cut(s) 24, 27, 311, 534, 624, 678
Sau3AI GATC 1 cut(s) 641
Sau96I GGNCC 2 cut(s) 4, 139
SchI GAGTC 1 cut(s) 281
SduI GDGCHC 1 cut(s) 65
SetI ASST 9 cut(s) 65, 182, 228, 252, 384, 460, 553, 603, 639
SfcI CTRYAG 1 cut(s) 656
Sfr274I CTCGAG 1 cut(s) 58
SfuI TTCGAA 1 cut(s) 152
SinI GGWCC 2 cut(s) 4, 139
SlaI CTCGAG 1 cut(s) 58
SmiMI CAYNNNNRTG 1 cut(s) 188
SmlI CTYRAG 1 cut(s) 58
SmoI CTYRAG 1 cut(s) 58
Sse9I AATT 7 cut(s) 209, 267, 279, 351, 408, 627, 756
SsiI CCGC 3 cut(s) 27, 311, 624
SspMI CTAG 1 cut(s) 743
SstI GAGCTC 1 cut(s) 65
StyI CCWWGG 1 cut(s) 477
TaaI ACNGT 6 cut(s) 45, 74, 190, 542, 686, 754
TaqI TCGA 4 cut(s) 59, 152, 157, 240
TasI AATT 7 cut(s) 209, 267, 279, 351, 408, 627, 756
TauI GCSGC 3 cut(s) 29, 313, 626
TfiI GAWTC 3 cut(s) 154, 169, 583
Tru1I TTAA 2 cut(s) 213, 425
Tru9I TTAA 2 cut(s) 213, 425
TscAI CASTG 2 cut(s) 195, 673
TseFI GTSAC 2 cut(s) 338, 664
TseI GCWGC 3 cut(s) 23, 533, 677
Tsp45I GTSAC 2 cut(s) 338, 664
TspDTI ATGAA 4 cut(s) 251, 392, 516, 525
TspRI CASTG 2 cut(s) 195, 673
Tth111I GACNNNGTC 1 cut(s) 344
VpaK11BI GGWCC 2 cut(s) 4, 139
XapI RAATTY 2 cut(s) 209, 408
XhoI CTCGAG 1 cut(s) 58
XspI CTAG 1 cut(s) 743
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.