FvH4_7g16803

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000421
Physical Location & Seq
Forward (+)
14357968 .. 14359022
1055 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g16803.t1

Sequence Viewer

Length: 573 bp
ATGAGTCAGGCACCAAGTAGTATTGGTTCTGGTTCTGCTGCAAGTGTTAATGCCGAGTCACTTCCGGTTGAACCTGGTGATGTGGATGACAAAGCTCCTTTGTGGATTTATACAAATAAGATTGAAAAGATGTCCGGCGGAGGATCTTGGAGGTTTGAATGTAAGTTTTGCAACACCAAATATGTTGGAGCTCATAATAGAGTTGTTTCACATTTGTTGAAGGATGGTGGAAAAGGTGTCAAAGCTTGCCCGAAGGTCACTCCTCAACAACTAGCTAATATGAGCAAGTTACTCAATGATTGCAAAGAAAGAGTCAAAAATGCAGCCCCAAAATCAGTTCCATTGCCTTCATCATCGAGGAATGCAGCAACTTCTTCACTTGATTATGATATGAGTTTTACTTGTAGTAATCCAACATCAAGTGAAGTGGGCCCAAAGAAGAGGAAGGGAATGGGCCGGTGCACTTATTTCAGCCAAGTATCCTACTATCTTCTGGACACCATGTGTAGTACATACCTTGAACCTTGCTGTGAAGAATATATGTGCACCTTCGCTGCAGACAAGAAACAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT

Protein Analysis

191

Amino Acids

20.66

Weight (kDa)

8.75

Isoelectric Point (pI)

60.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000421)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G08267
fragaria_vesca FvH4_2g14331 FvH4_2g16371 FvH4_2g26163 FvH4_3g42540 FvH4_4g02102 FvH4_4g12491 FvH4_4g35171 FvH4_5g06632 FvH4_5g06632 FvH4_5g06632 FvH4_5g08811 FvH4_5g08812 FvH4_5g23531 FvH4_6g10272 FvH4_6g40844 FvH4_7g16803 FvH4_7g16804
malus_domestica MD11G1099500.v1.1 MD17G1176800.v1.1
pyrus_communis pycom05g07840 pycom06g08730 pycom07g12010 pycom07g12020 pycom10g07270 pycom11g17470 pycom12g10610 pycom12g14240 pycom13g22040 pycom15g02440
rosa_chinensis RchiOBHm_Chr1g0371321 RchiOBHm_Chr2g0102701 RchiOBHm_Chr3g0465681 RchiOBHm_Chr4g0420941 RchiOBHm_Chr4g0434271 RchiOBHm_Chr4g0442721 RchiOBHm_Chr6g0262081 RchiOBHm_Chr6g0278171 RchiOBHm_Chr6g0294991 RchiOBHm_Chr6g0295001 RchiOBHm_Chr7g0205361 RchiOBHm_Chr7g0205371 RchiOBHm_Chr7g0223471
rosa_laevigata RLG00000005266
rosa_multiflora Rmu_sc0000493.1_g000033 Rmu_sc0000493.1_g000034 Rmu_sc0000507.1_g000007 Rmu_sc0000843.1_g000001 Rmu_sc0001075.1_g000033 Rmu_sc0002077.1_g000007 Rmu_sc0002077.1_g000008 Rmu_sc0002329.1_g000029 Rmu_sc0002539.1_g000077 Rmu_sc0002655.1_g000006 Rmu_sc0003127.1_g000020 Rmu_sc0003765.1_g000054 Rmu_sc0004368.1_g000023 Rmu_sc0004753.1_g000022 Rmu_sc0005297.1_g000014 Rmu_sc0007633.1_g000010 Rmu_sc0008164.1_g000005 Rmu_sc0008191.1_g000003 Rmu_sc0017900.1_g000005 Rmu_sc0022727.1_g000002
rosa_roxburghii Rroxscaffold_2G00079920 Rroxscaffold_3G00255890 Rroxscaffold_4G00295340 Rroxscaffold_4G00296360 Rroxscaffold_4G00299640 Rroxscaffold_6G00388210
rosa_rugosa Rorug02G0466700 Rorug04G0123200 Rorug05G0074800 Rorug07G0202900
rosa_samantha Rh1DG134700 Rh3CG159000 Rh4AG331000 Rh5AG521100 Rh5BG136400 Rh5DG127300 Rh5DG383100 Rh5DG386100 Rh5DG458000 Rh6CG450400 Rh7CG233800 Rh7DG407100
rosa_wichuraiana Rw1G004960 Rw1G005730 Rw1G006360 Rw1G017400 Rw2G013190 Rw2G022210 Rw2G029640 Rw5G020910 Rw5G036930 Rw6G016200 Rw7G018170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 10
AciI CCGC 1 cut(s) 138
AclWI GGATC 1 cut(s) 151
AdeI CACNNNGTG 1 cut(s) 504
AfaI GTAC 1 cut(s) 511
AgsI TTSAA 5 cut(s) 71, 125, 158, 220, 521
AjnI CCWGG 1 cut(s) 73
AluBI AGCT 4 cut(s) 95, 191, 245, 275
AluI AGCT 4 cut(s) 95, 191, 245, 275
Alw21I GWGCWC 3 cut(s) 193, 464, 548
Alw44I GTGCAC 2 cut(s) 460, 544
AlwI GGATC 1 cut(s) 151
AoxI GGCC 2 cut(s) 430, 454
ApaI GGGCCC 1 cut(s) 434
ApaLI GTGCAC 2 cut(s) 460, 544
ApeKI GCWGC 4 cut(s) 38, 323, 365, 554
ArsI GACNNNNNNTTYG 2 cut(s) 297, 329
AspS9I GGNCC 3 cut(s) 430, 431, 454
AsuHPI GGTGA 1 cut(s) 89
BaeGI GKGCMC 3 cut(s) 434, 464, 548
BanI GGYRCC 1 cut(s) 10
BanII GRGCYC 2 cut(s) 193, 434
Bbv12I GWGCWC 3 cut(s) 193, 464, 548
BbvI GCAGC 4 cut(s) 25, 335, 377, 541
BccI CCATC 1 cut(s) 218
BciT130I CCWGG 1 cut(s) 75
BciVI GTATCC 1 cut(s) 490
BfaI CTAG 1 cut(s) 272
BfmI CTRYAG 1 cut(s) 555
BfuI GTATCC 1 cut(s) 490
BisI GCNGC 4 cut(s) 39, 324, 366, 555
BlsI GCNGC 4 cut(s) 40, 325, 367, 556
Bme1390I CCNGG 1 cut(s) 75
BmgT120I GGNCC 3 cut(s) 430, 431, 454
BmiI GGNNCC 2 cut(s) 12, 432
BmrFI CCNGG 1 cut(s) 75
BsaWI WCCGGW 1 cut(s) 64
Bse118I RCCGGY 1 cut(s) 456
Bse3DI GCAATG 1 cut(s) 341
BseBI CCWGG 1 cut(s) 75
BseGI GGATG 2 cut(s) 91, 229
BseMI GCAATG 1 cut(s) 341
BseRI GAGGAG 1 cut(s) 252
BseSI GKGCMC 3 cut(s) 434, 464, 548
BseXI GCAGC 4 cut(s) 25, 335, 377, 541
BshFI GGCC 2 cut(s) 432, 456
BshNI GGYRCC 1 cut(s) 10
BsiHKAI GWGCWC 3 cut(s) 193, 464, 548
BsiSI CCGG 3 cut(s) 65, 135, 457
BsmI GAATGC 1 cut(s) 367
BsnI GGCC 2 cut(s) 432, 456
Bsp120I GGGCCC 1 cut(s) 430
Bsp1286I GDGCHC 4 cut(s) 193, 434, 464, 548
Bsp143I GATC 1 cut(s) 143
BspACI CCGC 1 cut(s) 138
BspANI GGCC 2 cut(s) 432, 456
BspLI GGNNCC 2 cut(s) 12, 432
BspMAI CTGCAG 1 cut(s) 559
BspPI GGATC 1 cut(s) 151
BspT107I GGYRCC 1 cut(s) 10
BsrDI GCAATG 1 cut(s) 341
BsrFI RCCGGY 1 cut(s) 456
BssAI RCCGGY 1 cut(s) 456
BssMI GATC 1 cut(s) 143
Bst2UI CCWGG 1 cut(s) 75
Bst6I CTCTTC 1 cut(s) 434
BstC8I GCNNGC 1 cut(s) 247
BstF5I GGATG 2 cut(s) 91, 229
BstKTI GATC 1 cut(s) 146
BstMBI GATC 1 cut(s) 143
BstNI CCWGG 1 cut(s) 75
BstSCI CCNGG 1 cut(s) 73
BstSFI CTRYAG 1 cut(s) 555
BstSLI GKGCMC 3 cut(s) 434, 464, 548
BstV1I GCAGC 4 cut(s) 25, 335, 377, 541
BstX2I RGATCY 1 cut(s) 143
BstYI RGATCY 1 cut(s) 143
BsuI GTATCC 1 cut(s) 490
BsuRI GGCC 2 cut(s) 432, 456
BtsCI GGATG 2 cut(s) 91, 229
Cac8I GCNNGC 1 cut(s) 247
Cfr10I RCCGGY 1 cut(s) 456
Cfr13I GGNCC 3 cut(s) 430, 431, 454
CsiI ACCWGGT 1 cut(s) 73
Csp6I GTAC 1 cut(s) 510
CspCI CAANNNNNGTGG 2 cut(s) 408, 443
CviAII CATG 1 cut(s) 502
CviJI RGCY 8 cut(s) 95, 191, 245, 275, 326, 432, 456, 474
CviKI_1 RGCY 8 cut(s) 95, 191, 245, 275, 326, 432, 456, 474
CviQI GTAC 1 cut(s) 510
DpnI GATC 1 cut(s) 145
DpnII GATC 1 cut(s) 143
DraIII CACNNNGTG 1 cut(s) 504
Eam1104I CTCTTC 1 cut(s) 434
EarI CTCTTC 1 cut(s) 434
EciI GGCGGA 1 cut(s) 153
Ecl136II GAGCTC 1 cut(s) 191
Eco24I GRGCYC 2 cut(s) 193, 434
Eco53kI GAGCTC 1 cut(s) 191
EcoICRI GAGCTC 1 cut(s) 191
EcoRII CCWGG 1 cut(s) 73
EcoT38I GRGCYC 2 cut(s) 193, 434
FaeI CATG 1 cut(s) 505
FatI CATG 1 cut(s) 501
Fnu4HI GCNGC 4 cut(s) 39, 324, 366, 555
FokI GGATG 2 cut(s) 98, 236
FriOI GRGCYC 2 cut(s) 193, 434
Fsp4HI GCNGC 4 cut(s) 39, 324, 366, 555
FspBI CTAG 1 cut(s) 272
GluI GCNGC 4 cut(s) 39, 324, 366, 555
HaeIII GGCC 2 cut(s) 432, 456
HapII CCGG 3 cut(s) 65, 135, 457
Hin1II CATG 1 cut(s) 505
HindIII AAGCTT 1 cut(s) 243
HinfI GANTC 3 cut(s) 4, 56, 312
HpaII CCGG 3 cut(s) 65, 135, 457
HphI GGTGA 1 cut(s) 89
Hpy166II GTNNAC 2 cut(s) 462, 546
Hpy188III TCNNGA 1 cut(s) 494
Hpy8I GTNNAC 2 cut(s) 462, 546
HpyAV CCTTC 5 cut(s) 214, 247, 357, 439, 559
HpyCH4V TGCA 8 cut(s) 41, 171, 303, 323, 365, 462, 546, 557
Hsp92II CATG 1 cut(s) 505
Kzo9I GATC 1 cut(s) 143
LmnI GCTCC 2 cut(s) 100, 188
LpnPI CCDG 7 cut(s) 15, 60, 78, 87, 148, 470, 479
Lsp1109I GCAGC 4 cut(s) 25, 335, 377, 541
MabI ACCWGGT 1 cut(s) 73
MaeI CTAG 1 cut(s) 272
MaeIII GTNAC 3 cut(s) 57, 256, 288
MalI GATC 1 cut(s) 145
MboI GATC 1 cut(s) 143
MboII GAAGA 4 cut(s) 366, 451, 482, 545
MflI RGATCY 1 cut(s) 143
MhlI GDGCHC 4 cut(s) 193, 434, 464, 548
MlyI GAGTC 3 cut(s) 13, 65, 321
MmeI TCCRAC 2 cut(s) 166, 437
MnlI CCTC 5 cut(s) 134, 144, 273, 351, 435
MseI TTAA 1 cut(s) 48
MspI CCGG 3 cut(s) 65, 135, 457
MspR9I CCNGG 1 cut(s) 75
Mva1269I GAATGC 1 cut(s) 367
MvaI CCWGG 1 cut(s) 75
NdeII GATC 1 cut(s) 143
NlaIII CATG 1 cut(s) 505
NlaIV GGNNCC 2 cut(s) 12, 432
NmeAIII GCCGAG 1 cut(s) 79
NmuCI GTSAC 2 cut(s) 57, 256
PctI GAATGC 1 cut(s) 367
PkrI GCNGC 4 cut(s) 40, 325, 367, 556
PleI GAGTC 3 cut(s) 12, 64, 320
PpsI GAGTC 3 cut(s) 12, 64, 320
Psp124BI GAGCTC 1 cut(s) 193
Psp6I CCWGG 1 cut(s) 73
PspGI CCWGG 1 cut(s) 73
PspN4I GGNNCC 2 cut(s) 12, 432
PspOMI GGGCCC 1 cut(s) 430
PspPI GGNCC 3 cut(s) 430, 431, 454
PsrI GAACNNNNNNTAC 2 cut(s) 10, 42
PstI CTGCAG 1 cut(s) 559
PsuI RGATCY 1 cut(s) 143
RsaI GTAC 1 cut(s) 511
RsaNI GTAC 1 cut(s) 510
SacI GAGCTC 1 cut(s) 193
SaqAI TTAA 1 cut(s) 48
SatI GCNGC 4 cut(s) 39, 324, 366, 555
Sau3AI GATC 1 cut(s) 143
Sau96I GGNCC 3 cut(s) 430, 431, 454
SchI GAGTC 3 cut(s) 13, 65, 321
ScrFI CCNGG 1 cut(s) 75
SduI GDGCHC 4 cut(s) 193, 434, 464, 548
SexAI ACCWGGT 1 cut(s) 73
SfcI CTRYAG 1 cut(s) 555
SsiI CCGC 1 cut(s) 138
SspMI CTAG 1 cut(s) 272
SstI GAGCTC 1 cut(s) 193
StyD4I CCNGG 1 cut(s) 73
TaqI TCGA 1 cut(s) 356
TatI WGTACW 1 cut(s) 509
Tru1I TTAA 1 cut(s) 48
Tru9I TTAA 1 cut(s) 48
TseFI GTSAC 2 cut(s) 57, 256
TseI GCWGC 4 cut(s) 38, 323, 365, 554
Tsp45I GTSAC 2 cut(s) 57, 256
TspDTI ATGAA 1 cut(s) 339
VneI GTGCAC 2 cut(s) 460, 544
XspI CTAG 1 cut(s) 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.