pycom15g02440

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0000421
Physical Location & Seq
Reverse (-)
1436621 .. 1437870
1250 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g02440.1

Sequence Viewer

Length: 1179 bp
ATGTCTGGAAACGGGATCGCACCTTGCAACAAGGTTACTGATGAAACTCTTGCGGAAATGAATAAGCTAGTTCGAGAGTGTGAATACAAGTTGAAGAGTTCTACTCCTAAGCATGTTTCGTTGCCTAATACCGGTTCATTCTGTTATGATCTACCTGAAGCAAATCTTGATCCAAAGAAGAGAAAGGGAACAAGTGGGCCTCTCAGTAAAGCTTTTAACAAGGAGGCTCGAGATCAATGTGATGCCGAAGTTGCAAGGATGTTTTATACAAGTGGCTTATCATTTAACCTTGCAAGAAATCCGCACTATCGGAACTCATATGTTCGTGCTTCTACACTTCCAGGGTATGTTCCACCAAGTTACAACGCACTGAGAACTACTCTTCTGCAACAAGAGAATAGTCACATTGAGCGGTGCCTCCAACCAATCAAGCGCACATGGAGCACTAAAGGTGTAAGTGTTTGCAGTGATGGGTGGATAAATGCTCAAAGGAGACCACTTATTAATATTATGGCAACTTGTGAAAGTGGGCCAATGTTCTTGAGAGCAATTAATTGTGAAGGTGAATACAAAGACAAGCATTGTATTGCCAACTTTCTTACAGAAGCTATTAAAGAAATTGGTCATGAAAATGTTGTTCAAGTGATCACTGATAATGCCCTTGTTTGTAAAACTACTGGGTTACTTATTGAGGCCCACTATCCCCATATCTTTTGGACACCCTGTGTTGTTCACACTCTTAATCTTGCTTTGAAGAGTATATGTTCTCCGAAACAAACAGAAGTTTCGTATGAGGACTGCAATTGGATTTCAACTATTGCTAGTGATGCTTGGTCCATAAAAATTTTTATTATGAACCATAGCATGAGATTGTCCATGTTTAATGAACATTGCAAACTAAAGTTACTTTCCATTTCCGAAACAAGATTTGCTTCCACACTTGTGATGCTTAGAAGATTTAAGGAAATAAAGGAAGGTTTACAACAAATGGTGATTAGCCCGAATTGGGCTTTGTACAAAGAAGATGATTTGGTTAAAGCAATGATGGTGAAGCAAAAGATATTGGATGAGGATTTTTGGGACAAGATTGATTATATTCTTTTCTTTACAGCTCCAATATATGAGGTTATTAGAATGGCTGACATAAATAAACCTTGTCTTCACTTGGTGTATGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT

Protein Analysis

393

Amino Acids

44.77

Weight (kDa)

8.27

Isoelectric Point (pI)

38.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF659 PF04937 119 - 279 4e-47 Domain of unknown function (DUF659)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000421)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G08267
fragaria_vesca FvH4_2g14331 FvH4_2g16371 FvH4_2g26163 FvH4_3g42540 FvH4_4g02102 FvH4_4g12491 FvH4_4g35171 FvH4_5g06632 FvH4_5g06632 FvH4_5g06632 FvH4_5g08811 FvH4_5g08812 FvH4_5g23531 FvH4_6g10272 FvH4_6g40844 FvH4_7g16803 FvH4_7g16804
malus_domestica MD11G1099500.v1.1 MD17G1176800.v1.1
pyrus_communis pycom05g07840 pycom06g08730 pycom07g12010 pycom07g12020 pycom10g07270 pycom11g17470 pycom12g10610 pycom12g14240 pycom13g22040 pycom15g02440
rosa_chinensis RchiOBHm_Chr1g0371321 RchiOBHm_Chr2g0102701 RchiOBHm_Chr3g0465681 RchiOBHm_Chr4g0420941 RchiOBHm_Chr4g0434271 RchiOBHm_Chr4g0442721 RchiOBHm_Chr6g0262081 RchiOBHm_Chr6g0278171 RchiOBHm_Chr6g0294991 RchiOBHm_Chr6g0295001 RchiOBHm_Chr7g0205361 RchiOBHm_Chr7g0205371 RchiOBHm_Chr7g0223471
rosa_laevigata RLG00000005266
rosa_multiflora Rmu_sc0000493.1_g000033 Rmu_sc0000493.1_g000034 Rmu_sc0000507.1_g000007 Rmu_sc0000843.1_g000001 Rmu_sc0001075.1_g000033 Rmu_sc0002077.1_g000007 Rmu_sc0002077.1_g000008 Rmu_sc0002329.1_g000029 Rmu_sc0002539.1_g000077 Rmu_sc0002655.1_g000006 Rmu_sc0003127.1_g000020 Rmu_sc0003765.1_g000054 Rmu_sc0004368.1_g000023 Rmu_sc0004753.1_g000022 Rmu_sc0005297.1_g000014 Rmu_sc0007633.1_g000010 Rmu_sc0008164.1_g000005 Rmu_sc0008191.1_g000003 Rmu_sc0017900.1_g000005 Rmu_sc0022727.1_g000002
rosa_roxburghii Rroxscaffold_2G00079920 Rroxscaffold_3G00255890 Rroxscaffold_4G00295340 Rroxscaffold_4G00296360 Rroxscaffold_4G00299640 Rroxscaffold_6G00388210
rosa_rugosa Rorug02G0466700 Rorug04G0123200 Rorug05G0074800 Rorug07G0202900
rosa_samantha Rh1DG134700 Rh3CG159000 Rh4AG331000 Rh5AG521100 Rh5BG136400 Rh5DG127300 Rh5DG383100 Rh5DG386100 Rh5DG458000 Rh6CG450400 Rh7CG233800 Rh7DG407100
rosa_wichuraiana Rw1G004960 Rw1G005730 Rw1G006360 Rw1G017400 Rw2G013190 Rw2G022210 Rw2G029640 Rw5G020910 Rw5G036930 Rw6G016200 Rw7G018170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 414
AccBSI CCGCTC 1 cut(s) 412
AciI CCGC 3 cut(s) 53, 302, 412
AclWI GGATC 2 cut(s) 23, 164
AcsI RAATTY 1 cut(s) 843
AcuI CTGAAG 1 cut(s) 177
AdeI CACNNNGTG 2 cut(s) 725, 1168
AfaI GTAC 1 cut(s) 1016
AfiI CCNNNNNNNGG 2 cut(s) 131, 1006
AgeI ACCGGT 1 cut(s) 131
AgsI TTSAA 4 cut(s) 94, 641, 754, 813
AjnI CCWGG 1 cut(s) 340
AleI CACNNNNGTG 1 cut(s) 941
AluBI AGCT 4 cut(s) 67, 212, 608, 1112
AluI AGCT 4 cut(s) 67, 212, 608, 1112
Alw21I GWGCWC 1 cut(s) 446
Alw26I GTCTC 1 cut(s) 487
AlwI GGATC 2 cut(s) 23, 164
Ama87I CYCGRG 1 cut(s) 228
AoxI GGCC 3 cut(s) 197, 530, 693
ApoI RAATTY 1 cut(s) 843
AseI ATTAAT 2 cut(s) 504, 552
AsiGI ACCGGT 1 cut(s) 131
AspLEI GCGC 1 cut(s) 435
AspS9I GGNCC 4 cut(s) 197, 530, 694, 834
AsuHPI GGTGA 3 cut(s) 575, 1003, 1060
AvaI CYCGRG 1 cut(s) 228
AvaII GGWCC 1 cut(s) 834
BanI GGYRCC 1 cut(s) 414
BbsI GAAGAC 1 cut(s) 1151
Bbv12I GWGCWC 1 cut(s) 446
BccI CCATC 2 cut(s) 464, 1039
BciT130I CCWGG 1 cut(s) 342
BclI TGATCA 1 cut(s) 645
BcoDI GTCTC 1 cut(s) 487
BfaI CTAG 2 cut(s) 68, 822
Bme1390I CCNGG 1 cut(s) 342
Bme18I GGWCC 1 cut(s) 834
BmeT110I CYCGRG 1 cut(s) 228
BmgT120I GGNCC 4 cut(s) 197, 530, 694, 834
BmiI GGNNCC 1 cut(s) 416
BmrFI CCNGG 1 cut(s) 342
BmrI ACTGGG 1 cut(s) 687
BmsI GCATC 3 cut(s) 232, 817, 936
BmuI ACTGGG 1 cut(s) 687
BpiI GAAGAC 1 cut(s) 1151
BplI GAGNNNNNCTC 4 cut(s) 88, 120, 364, 396
Bpu10I CCTNAGC 1 cut(s) 108
BpuEI CTTGAG 1 cut(s) 562
BsaI GGTCTC 1 cut(s) 487
BsaJI CCNNGG 1 cut(s) 341
BsaWI WCCGGW 1 cut(s) 131
Bsc4I CCNNNNNNNGG 2 cut(s) 131, 1006
Bse118I RCCGGY 1 cut(s) 131
Bse1I ACTGG 1 cut(s) 682
Bse3DI GCAATG 2 cut(s) 889, 1047
BseBI CCWGG 1 cut(s) 342
BseDI CCNNGG 1 cut(s) 341
BseGI GGATG 2 cut(s) 264, 1072
BseLI CCNNNNNNNGG 2 cut(s) 131, 1006
BseMI GCAATG 2 cut(s) 889, 1047
BseMII CTCAG 2 cut(s) 217, 362
BseNI ACTGG 1 cut(s) 682
BshFI GGCC 3 cut(s) 199, 532, 695
BshNI GGYRCC 1 cut(s) 414
BshTI ACCGGT 1 cut(s) 131
BsiHKAI GWGCWC 1 cut(s) 446
BsiHKCI CYCGRG 1 cut(s) 228
BsiSI CCGG 1 cut(s) 132
BslFI GGGAC 1 cut(s) 1094
BslI CCNNNNNNNGG 2 cut(s) 131, 1006
BsmAI GTCTC 1 cut(s) 487
BsmFI GGGAC 1 cut(s) 1094
BsnI GGCC 3 cut(s) 199, 532, 695
Bso31I GGTCTC 1 cut(s) 487
BsoBI CYCGRG 1 cut(s) 228
Bsp1286I GDGCHC 1 cut(s) 446
Bsp1407I TGTACA 1 cut(s) 1014
Bsp143I GATC 5 cut(s) 15, 148, 169, 232, 645
BspACI CCGC 3 cut(s) 53, 302, 412
BspANI GGCC 3 cut(s) 199, 532, 695
BspCNI CTCAG 2 cut(s) 216, 363
BspHI TCATGA 1 cut(s) 625
BspLI GGNNCC 1 cut(s) 416
BspPI GGATC 2 cut(s) 23, 164
BspT107I GGYRCC 1 cut(s) 414
BspTNI GGTCTC 1 cut(s) 487
BsrBI CCGCTC 1 cut(s) 412
BsrDI GCAATG 2 cut(s) 889, 1047
BsrFI RCCGGY 1 cut(s) 131
BsrGI TGTACA 1 cut(s) 1014
BsrI ACTGG 1 cut(s) 682
BssAI RCCGGY 1 cut(s) 131
BssECI CCNNGG 1 cut(s) 341
BssMI GATC 5 cut(s) 15, 148, 169, 232, 645
Bst2UI CCWGG 1 cut(s) 342
Bst6I CTCTTC 4 cut(s) 89, 173, 387, 749
BstAUI TGTACA 1 cut(s) 1014
BstDEI CTNAG 4 cut(s) 108, 203, 371, 950
BstF5I GGATG 2 cut(s) 264, 1072
BstHHI GCGC 1 cut(s) 435
BstKTI GATC 5 cut(s) 18, 151, 172, 235, 648
BstMAI GTCTC 1 cut(s) 487
BstMBI GATC 5 cut(s) 15, 148, 169, 232, 645
BstMWI GCNNNNNNNGC 3 cut(s) 251, 441, 827
BstNI CCWGG 1 cut(s) 342
BstNSI RCATGY 1 cut(s) 116
BstSCI CCNGG 1 cut(s) 340
BstV2I GAAGAC 1 cut(s) 1151
BsuRI GGCC 3 cut(s) 199, 532, 695
BtsCI GGATG 2 cut(s) 264, 1072
BtsI GCAGTG 1 cut(s) 472
BtsIMutI CAGTG 3 cut(s) 368, 472, 648
CciI TCATGA 1 cut(s) 625
CfoI GCGC 1 cut(s) 435
Cfr10I RCCGGY 1 cut(s) 131
Cfr13I GGNCC 4 cut(s) 197, 530, 694, 834
Csp6I GTAC 1 cut(s) 1015
CspAI ACCGGT 1 cut(s) 131
CviAII CATG 5 cut(s) 113, 438, 626, 865, 877
CviQI GTAC 1 cut(s) 1015
DdeI CTNAG 4 cut(s) 108, 203, 371, 950
DpnI GATC 5 cut(s) 17, 150, 171, 234, 647
DpnII GATC 5 cut(s) 15, 148, 169, 232, 645
DraIII CACNNNGTG 2 cut(s) 725, 1168
Eam1104I CTCTTC 4 cut(s) 89, 173, 387, 749
EarI CTCTTC 4 cut(s) 89, 173, 387, 749
Eco31I GGTCTC 1 cut(s) 487
Eco47I GGWCC 1 cut(s) 834
Eco57I CTGAAG 1 cut(s) 177
Eco88I CYCGRG 1 cut(s) 228
EcoRII CCWGG 1 cut(s) 340
FaeI CATG 5 cut(s) 116, 441, 629, 868, 880
FalI AAGNNNNNCTT 4 cut(s) 150, 182, 916, 948
FaqI GGGAC 1 cut(s) 1094
FatI CATG 5 cut(s) 112, 437, 625, 864, 876
FauNDI CATATG 1 cut(s) 319
FbaI TGATCA 1 cut(s) 645
FokI GGATG 2 cut(s) 271, 1079
FspBI CTAG 2 cut(s) 68, 822
GlaI GCGC 1 cut(s) 434
HaeIII GGCC 3 cut(s) 199, 532, 695
HapII CCGG 1 cut(s) 132
HhaI GCGC 1 cut(s) 435
Hin1II CATG 5 cut(s) 116, 441, 629, 868, 880
Hin6I GCGC 1 cut(s) 433
HinP1I GCGC 1 cut(s) 433
HindIII AAGCTT 1 cut(s) 210
HpaII CCGG 1 cut(s) 132
HphI GGTGA 3 cut(s) 575, 1003, 1060
Hpy166II GTNNAC 2 cut(s) 733, 980
Hpy188I TCNGA 3 cut(s) 312, 771, 919
Hpy188III TCNNGA 6 cut(s) 6, 74, 167, 230, 541, 626
Hpy8I GTNNAC 2 cut(s) 733, 980
HpyAV CCTTC 2 cut(s) 554, 968
HpyCH4V TGCA 7 cut(s) 27, 254, 293, 388, 465, 801, 894
HpyF10VI GCNNNNNNNGC 3 cut(s) 251, 441, 827
HpyF3I CTNAG 4 cut(s) 108, 203, 371, 950
Hsp92II CATG 5 cut(s) 116, 441, 629, 868, 880
HspAI GCGC 1 cut(s) 433
Ksp22I TGATCA 1 cut(s) 645
Kzo9I GATC 5 cut(s) 15, 148, 169, 232, 645
LmnI GCTCC 2 cut(s) 441, 1117
LpnPI CCDG 6 cut(s) 145, 168, 327, 354, 663, 736
LweI GCATC 3 cut(s) 232, 817, 936
MaeI CTAG 2 cut(s) 68, 822
MaeIII GTNAC 5 cut(s) 34, 359, 401, 681, 903
MalI GATC 5 cut(s) 17, 150, 171, 234, 647
MbiI CCGCTC 1 cut(s) 412
MboI GATC 5 cut(s) 15, 148, 169, 232, 645
MboII GAAGA 7 cut(s) 106, 190, 374, 766, 966, 1034, 1151
MfeI CAATTG 1 cut(s) 802
MhlI GDGCHC 1 cut(s) 446
MluCI AATT 6 cut(s) 549, 553, 618, 802, 843, 1003
MmeI TCCRAC 1 cut(s) 445
MnlI CCTC 7 cut(s) 210, 217, 428, 685, 787, 1063, 1117
MseI TTAA 9 cut(s) 216, 285, 504, 552, 612, 741, 882, 960, 1035
MslI CAYNNNNRTG 2 cut(s) 630, 941
MspI CCGG 1 cut(s) 132
MspR9I CCNGG 1 cut(s) 342
MunI CAATTG 1 cut(s) 802
MvaI CCWGG 1 cut(s) 342
MwoI GCNNNNNNNGC 3 cut(s) 251, 441, 827
NdeI CATATG 1 cut(s) 319
NdeII GATC 5 cut(s) 15, 148, 169, 232, 645
NlaIII CATG 5 cut(s) 116, 441, 629, 868, 880
NlaIV GGNNCC 1 cut(s) 416
NmuCI GTSAC 1 cut(s) 401
NspI RCATGY 1 cut(s) 116
OliI CACNNNNGTG 1 cut(s) 941
PaeR7I CTCGAG 1 cut(s) 228
PagI TCATGA 1 cut(s) 625
PinAI ACCGGT 1 cut(s) 131
PshBI ATTAAT 2 cut(s) 504, 552
Psp6I CCWGG 1 cut(s) 340
PspGI CCWGG 1 cut(s) 340
PspN4I GGNNCC 1 cut(s) 416
PspPI GGNCC 4 cut(s) 197, 530, 694, 834
RsaI GTAC 1 cut(s) 1016
RsaNI GTAC 1 cut(s) 1015
RseI CAYNNNNRTG 2 cut(s) 630, 941
SaqAI TTAA 9 cut(s) 216, 285, 504, 552, 612, 741, 882, 960, 1035
Sau3AI GATC 5 cut(s) 15, 148, 169, 232, 645
Sau96I GGNCC 4 cut(s) 197, 530, 694, 834
ScrFI CCNGG 1 cut(s) 342
SduI GDGCHC 1 cut(s) 446
SfaNI GCATC 3 cut(s) 232, 817, 936
Sfr274I CTCGAG 1 cut(s) 228
SinI GGWCC 1 cut(s) 834
SlaI CTCGAG 1 cut(s) 228
SmiMI CAYNNNNRTG 2 cut(s) 630, 941
SmlI CTYRAG 2 cut(s) 228, 541
SmoI CTYRAG 2 cut(s) 228, 541
Sse9I AATT 6 cut(s) 549, 553, 618, 802, 843, 1003
SsiI CCGC 3 cut(s) 53, 302, 412
SspI AATATT 1 cut(s) 508
SspMI CTAG 2 cut(s) 68, 822
StyD4I CCNGG 1 cut(s) 340
TaqI TCGA 2 cut(s) 73, 229
TasI AATT 6 cut(s) 549, 553, 618, 802, 843, 1003
TatI WGTACW 1 cut(s) 1014
Tru1I TTAA 9 cut(s) 216, 285, 504, 552, 612, 741, 882, 960, 1035
Tru9I TTAA 9 cut(s) 216, 285, 504, 552, 612, 741, 882, 960, 1035
TscAI CASTG 3 cut(s) 375, 472, 655
TseFI GTSAC 1 cut(s) 401
Tsp45I GTSAC 1 cut(s) 401
TspDTI ATGAA 6 cut(s) 57, 74, 126, 642, 869, 900
TspRI CASTG 3 cut(s) 375, 472, 655
VpaK11BI GGWCC 1 cut(s) 834
VspI ATTAAT 2 cut(s) 504, 552
XapI RAATTY 1 cut(s) 843
XceI RCATGY 1 cut(s) 116
XhoI CTCGAG 1 cut(s) 228
XspI CTAG 2 cut(s) 68, 822
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.