Rroxscaffold_2G00079920

Protein of unknown function (DUF 659)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000421
Physical Location & Seq
Forward (+)
2833174 .. 2835021
1848 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00079920.1

Sequence Viewer

Length: 549 bp
ATGTCTGTTGCTACCGGCAAGATTGTTGCACGGGCTCCCACCAACCACGAGATCAAACCCACCAAATGTATTGATTTCAACAATGGCGTTTGGAAAAAGAAAACCATCACATCAAAACCAATTTTAGAAGAAAATTATGAAGATCATGTTGGTGAGTATGAAGACAATAATTCTGTTGAAGAAACTCAAGTGAGTTATACAGACCAATCATCGAGTAGAAACAGCCATGAACAAGCTCAAGAATCTCAAGAAATTCCAATAAATTCTGACCTAAAGCCATTACTTAATGAAGTTATTATCACAGGTGGAGTGCAAGGAAAAAATTTAGGTGGAACAAAATCATGGACCTGCAAACATTGTAATGGTCAATATAAGAGTTCATATACTCGCATTCACTACCATTTTTTTGGTAATCTCCCTGGAAAAAAATCAGAGATCCGTCGATGTCAATCATTGATTAATAATCGGGAGGAATATGAAAGGGTTCGCAGAATGGTTATGGAAGCTGAAAAAAAGGTTTTGTCCATAATCTTGAACATATCATCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT

Protein Analysis

182

Amino Acids

20.75

Weight (kDa)

8.28

Isoelectric Point (pI)

42.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000421)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G08267
fragaria_vesca FvH4_2g14331 FvH4_2g16371 FvH4_2g26163 FvH4_3g42540 FvH4_4g02102 FvH4_4g12491 FvH4_4g35171 FvH4_5g06632 FvH4_5g06632 FvH4_5g06632 FvH4_5g08811 FvH4_5g08812 FvH4_5g23531 FvH4_6g10272 FvH4_6g40844 FvH4_7g16803 FvH4_7g16804
malus_domestica MD11G1099500.v1.1 MD17G1176800.v1.1
pyrus_communis pycom05g07840 pycom06g08730 pycom07g12010 pycom07g12020 pycom10g07270 pycom11g17470 pycom12g10610 pycom12g14240 pycom13g22040 pycom15g02440
rosa_chinensis RchiOBHm_Chr1g0371321 RchiOBHm_Chr2g0102701 RchiOBHm_Chr3g0465681 RchiOBHm_Chr4g0420941 RchiOBHm_Chr4g0434271 RchiOBHm_Chr4g0442721 RchiOBHm_Chr6g0262081 RchiOBHm_Chr6g0278171 RchiOBHm_Chr6g0294991 RchiOBHm_Chr6g0295001 RchiOBHm_Chr7g0205361 RchiOBHm_Chr7g0205371 RchiOBHm_Chr7g0223471
rosa_laevigata RLG00000005266
rosa_multiflora Rmu_sc0000493.1_g000033 Rmu_sc0000493.1_g000034 Rmu_sc0000507.1_g000007 Rmu_sc0000843.1_g000001 Rmu_sc0001075.1_g000033 Rmu_sc0002077.1_g000007 Rmu_sc0002077.1_g000008 Rmu_sc0002329.1_g000029 Rmu_sc0002539.1_g000077 Rmu_sc0002655.1_g000006 Rmu_sc0003127.1_g000020 Rmu_sc0003765.1_g000054 Rmu_sc0004368.1_g000023 Rmu_sc0004753.1_g000022 Rmu_sc0005297.1_g000014 Rmu_sc0007633.1_g000010 Rmu_sc0008164.1_g000005 Rmu_sc0008191.1_g000003 Rmu_sc0017900.1_g000005 Rmu_sc0022727.1_g000002
rosa_roxburghii Rroxscaffold_2G00079920 Rroxscaffold_3G00255890 Rroxscaffold_4G00295340 Rroxscaffold_4G00296360 Rroxscaffold_4G00299640 Rroxscaffold_6G00388210
rosa_rugosa Rorug02G0466700 Rorug04G0123200 Rorug05G0074800 Rorug07G0202900
rosa_samantha Rh1DG134700 Rh3CG159000 Rh4AG331000 Rh5AG521100 Rh5BG136400 Rh5DG127300 Rh5DG383100 Rh5DG386100 Rh5DG458000 Rh6CG450400 Rh7CG233800 Rh7DG407100
rosa_wichuraiana Rw1G004960 Rw1G005730 Rw1G006360 Rw1G017400 Rw2G013190 Rw2G022210 Rw2G029640 Rw5G020910 Rw5G036930 Rw6G016200 Rw7G018170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 356
AclWI GGATC 1 cut(s) 430
AcsI RAATTY 3 cut(s) 252, 262, 322
AgsI TTSAA 3 cut(s) 79, 179, 535
AjnI CCWGG 1 cut(s) 418
AjuI GAANNNNNNNTTGG 2 cut(s) 132, 164
AluBI AGCT 2 cut(s) 236, 506
AluI AGCT 2 cut(s) 236, 506
AlwI GGATC 1 cut(s) 430
ApoI RAATTY 3 cut(s) 252, 262, 322
AseI ATTAAT 1 cut(s) 459
Asp700I GAANNNNTTC 1 cut(s) 483
AspS9I GGNCC 1 cut(s) 345
AsuHPI GGTGA 1 cut(s) 164
AvaII GGWCC 1 cut(s) 345
BanII GRGCYC 1 cut(s) 37
BauI CACGAG 1 cut(s) 47
BbsI GAAGAC 1 cut(s) 168
BccI CCATC 1 cut(s) 113
BciT130I CCWGG 1 cut(s) 420
BfuAI ACCTGC 1 cut(s) 356
Bme1390I CCNGG 1 cut(s) 420
Bme18I GGWCC 1 cut(s) 345
BmgT120I GGNCC 1 cut(s) 345
BmiI GGNNCC 1 cut(s) 36
BmrFI CCNGG 1 cut(s) 420
BpiI GAAGAC 1 cut(s) 168
BpuEI CTTGAG 3 cut(s) 171, 222, 231
BsaBI GATNNNNATC 1 cut(s) 448
BsaJI CCNNGG 1 cut(s) 418
Bse118I RCCGGY 1 cut(s) 14
Bse8I GATNNNNATC 1 cut(s) 448
BseBI CCWGG 1 cut(s) 420
BseDI CCNNGG 1 cut(s) 418
BseJI GATNNNNATC 1 cut(s) 448
BsiSI CCGG 1 cut(s) 15
BsmI GAATGC 1 cut(s) 390
Bsp1286I GDGCHC 1 cut(s) 37
Bsp143I GATC 3 cut(s) 51, 142, 435
BspHI TCATGA 1 cut(s) 545
BspLI GGNNCC 1 cut(s) 36
BspMI ACCTGC 1 cut(s) 356
BspPI GGATC 1 cut(s) 430
BsrFI RCCGGY 1 cut(s) 14
BssAI RCCGGY 1 cut(s) 14
BssECI CCNNGG 1 cut(s) 418
BssMI GATC 3 cut(s) 51, 142, 435
BssSI CACGAG 1 cut(s) 47
Bst2BI CACGAG 1 cut(s) 47
Bst2UI CCWGG 1 cut(s) 420
BstKTI GATC 3 cut(s) 54, 145, 438
BstMBI GATC 3 cut(s) 51, 142, 435
BstNI CCWGG 1 cut(s) 420
BstSCI CCNGG 1 cut(s) 418
BstV2I GAAGAC 1 cut(s) 168
BstX2I RGATCY 1 cut(s) 435
BstXI CCANNNNNNTGG 1 cut(s) 407
BstYI RGATCY 1 cut(s) 435
BveI ACCTGC 1 cut(s) 356
CciI TCATGA 1 cut(s) 545
Cfr10I RCCGGY 1 cut(s) 14
Cfr13I GGNCC 1 cut(s) 345
CviAII CATG 4 cut(s) 146, 227, 342, 546
CviJI RGCY 5 cut(s) 35, 225, 236, 277, 506
CviKI_1 RGCY 5 cut(s) 35, 225, 236, 277, 506
DpnI GATC 3 cut(s) 53, 144, 437
DpnII GATC 3 cut(s) 51, 142, 435
Eco24I GRGCYC 1 cut(s) 37
Eco47I GGWCC 1 cut(s) 345
EcoRII CCWGG 1 cut(s) 418
EcoT38I GRGCYC 1 cut(s) 37
FaeI CATG 4 cut(s) 149, 230, 345, 549
FatI CATG 4 cut(s) 145, 226, 341, 545
FriOI GRGCYC 1 cut(s) 37
HapII CCGG 1 cut(s) 15
Hin1II CATG 4 cut(s) 149, 230, 345, 549
HinfI GANTC 1 cut(s) 242
HpaII CCGG 1 cut(s) 15
HphI GGTGA 1 cut(s) 164
Hpy188I TCNGA 2 cut(s) 268, 433
Hpy188III TCNNGA 5 cut(s) 239, 248, 467, 532, 546
Hpy99I CGWCG 1 cut(s) 444
HpyCH4V TGCA 3 cut(s) 29, 313, 351
Hsp92II CATG 4 cut(s) 149, 230, 345, 549
Kzo9I GATC 3 cut(s) 51, 142, 435
LmnI GCTCC 1 cut(s) 40
LpnPI CCDG 5 cut(s) 28, 288, 361, 405, 432
MalI GATC 3 cut(s) 53, 144, 437
MboI GATC 3 cut(s) 51, 142, 435
MboII GAAGA 4 cut(s) 140, 152, 173, 191
MflI RGATCY 1 cut(s) 435
MhlI GDGCHC 1 cut(s) 37
MluCI AATT 6 cut(s) 120, 133, 169, 252, 262, 322
MnlI CCTC 1 cut(s) 463
MroXI GAANNNNTTC 1 cut(s) 483
MseI TTAA 2 cut(s) 285, 459
MslI CAYNNNNRTG 2 cut(s) 150, 360
MspI CCGG 1 cut(s) 15
MspR9I CCNGG 1 cut(s) 420
Mva1269I GAATGC 1 cut(s) 390
MvaI CCWGG 1 cut(s) 420
NdeII GATC 3 cut(s) 51, 142, 435
NlaIII CATG 4 cut(s) 149, 230, 345, 549
NlaIV GGNNCC 1 cut(s) 36
PagI TCATGA 1 cut(s) 545
PctI GAATGC 1 cut(s) 390
PdmI GAANNNNTTC 1 cut(s) 483
PfeI GAWTC 1 cut(s) 242
PshBI ATTAAT 1 cut(s) 459
Psp6I CCWGG 1 cut(s) 418
PspGI CCWGG 1 cut(s) 418
PspN4I GGNNCC 1 cut(s) 36
PspPI GGNCC 1 cut(s) 345
PsuI RGATCY 1 cut(s) 435
RseI CAYNNNNRTG 2 cut(s) 150, 360
SaqAI TTAA 2 cut(s) 285, 459
Sau3AI GATC 3 cut(s) 51, 142, 435
Sau96I GGNCC 1 cut(s) 345
ScrFI CCNGG 1 cut(s) 420
SduI GDGCHC 1 cut(s) 37
SetI ASST 7 cut(s) 238, 273, 307, 331, 350, 508, 519
SinI GGWCC 1 cut(s) 345
SmiMI CAYNNNNRTG 2 cut(s) 150, 360
SmlI CTYRAG 3 cut(s) 186, 237, 246
SmoI CTYRAG 3 cut(s) 186, 237, 246
Sse9I AATT 6 cut(s) 120, 133, 169, 252, 262, 322
StyD4I CCNGG 1 cut(s) 418
TaqI TCGA 2 cut(s) 212, 442
TasI AATT 6 cut(s) 120, 133, 169, 252, 262, 322
TfiI GAWTC 1 cut(s) 242
Tru1I TTAA 2 cut(s) 285, 459
Tru9I TTAA 2 cut(s) 285, 459
TspDTI ATGAA 6 cut(s) 153, 174, 243, 303, 369, 492
TspGWI ACGGA 1 cut(s) 428
VpaK11BI GGWCC 1 cut(s) 345
VspI ATTAAT 1 cut(s) 459
XapI RAATTY 3 cut(s) 252, 262, 322
XmnI GAANNNNTTC 1 cut(s) 483
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.