Rw2G022210

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000421
Physical Location & Seq
Reverse (-)
31077306 .. 31078816
1511 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G022210.1

Sequence Viewer

Length: 1284 bp
ATGATGTTGAGGGCTATAAACTGTGAGGGGGAATTCAAGGATCATGCATTGATTGCAGACTTGATTATAGATTCCATCAAGGAAGTGGGTTGGGAAAATGTTGTGCAAGTGATTACCGACAATGCTCCTGTTTGTTCTAAGGCCGGTGCCTTGATAGCAAGTACATATCCTACTATTTTTTGGACACCATGTGTAGTGCATACTTTGAATCTTGCTGTCAAGAATATTTGCACACCTTCATTAGTTGCAAGCAATGCGGATGTGTTTGCATCTACGTTAATCATGCTAAAGAGGTTTAGGCAAATCAAAAATGGTTTGCAACAGATGGTCATCAGTCCAAAGTGGGATGATTACAAAGAAGATGATGTTAGGAAGGCTGCTTCTGTGAAAGAGAAATTATTAGATGAGTTTCTATGGGATGACATTGATTACGTCATTTCTTTTGCTGAGCCTATCTATGAGATGATCAGGAGAGCAGACACTGATAGGCCTTCTCTTCATTTGGTGTATGAATGGTGGGATAGTATGATTGAGCAAGTGAAGAAAGCTATCTATAGGAAAGAAAGGAAGCAACCTCATCAAGAGTCTCCATTTTGGGATGCGGTGTATAAGGTTCTAATGGCTCGTTGGTCCAAGAGCAATACTTCTCTCAATTGCTTGGCACATTCATTGAATCCGAAGTATTATAGTTCGGAATGGCTTAGTGAAGACACTAATCGTGTTGCTCCCCACAAAGATTTAGAGATTACAAGGGAGAGGAAAAATTGTATCCTTAGATACTTTGCCAATGAAGATGATCGAAGGAAAGTTAACATAGAATTTGCCAATTTTTCTATGTGCATGCAAGAGTTTGGAAGTGGAGATGCTATGAAGGATAGGTTTATTATGGAGCCTATAACATGGTGGGCTGTCCATGGAGCTTCGGCACCATCTCTCCAAGCCATAGCCTTCAAGGTTCTAGGTCAACCTTGTTCTTCTTCATGTTGTGAAAGAAATTGGAGTACTTACAATTTCATTCACTCTGTGAGGAGGAACAAGATAACACCACAAAGAGCGGAAGATTTGGTGTTTGTGCATACCAATCTTCGCCTTTTAGCTAGAAAAAGCCCAAGTTACAATGAGAGTGAAACTCAAATGTGGGATGTTGGAGGTGATGAGTTTCATTCTTTGGAAGAGACTAATGTTGGAAGGCTTGAGATTGCTAACCTTTCACTTGATGAACCACAATTAGAAGGGGTTTTGTTTGAAGATGAAGACCTTGAGGATGTTGTCGAAGTTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT

Protein Analysis

427

Amino Acids

49.33

Weight (kDa)

5.16

Isoelectric Point (pI)

40.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF659 PF04937 3 - 80 6.4e-22 Domain of unknown function (DUF659)
Dimer_Tnp_hAT PF05699 295 - 362 2.8e-12 hAT family C-terminal dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000421)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G08267
fragaria_vesca FvH4_2g14331 FvH4_2g16371 FvH4_2g26163 FvH4_3g42540 FvH4_4g02102 FvH4_4g12491 FvH4_4g35171 FvH4_5g06632 FvH4_5g06632 FvH4_5g06632 FvH4_5g08811 FvH4_5g08812 FvH4_5g23531 FvH4_6g10272 FvH4_6g40844 FvH4_7g16803 FvH4_7g16804
malus_domestica MD11G1099500.v1.1 MD17G1176800.v1.1
pyrus_communis pycom05g07840 pycom06g08730 pycom07g12010 pycom07g12020 pycom10g07270 pycom11g17470 pycom12g10610 pycom12g14240 pycom13g22040 pycom15g02440
rosa_chinensis RchiOBHm_Chr1g0371321 RchiOBHm_Chr2g0102701 RchiOBHm_Chr3g0465681 RchiOBHm_Chr4g0420941 RchiOBHm_Chr4g0434271 RchiOBHm_Chr4g0442721 RchiOBHm_Chr6g0262081 RchiOBHm_Chr6g0278171 RchiOBHm_Chr6g0294991 RchiOBHm_Chr6g0295001 RchiOBHm_Chr7g0205361 RchiOBHm_Chr7g0205371 RchiOBHm_Chr7g0223471
rosa_laevigata RLG00000005266
rosa_multiflora Rmu_sc0000493.1_g000033 Rmu_sc0000493.1_g000034 Rmu_sc0000507.1_g000007 Rmu_sc0000843.1_g000001 Rmu_sc0001075.1_g000033 Rmu_sc0002077.1_g000007 Rmu_sc0002077.1_g000008 Rmu_sc0002329.1_g000029 Rmu_sc0002539.1_g000077 Rmu_sc0002655.1_g000006 Rmu_sc0003127.1_g000020 Rmu_sc0003765.1_g000054 Rmu_sc0004368.1_g000023 Rmu_sc0004753.1_g000022 Rmu_sc0005297.1_g000014 Rmu_sc0007633.1_g000010 Rmu_sc0008164.1_g000005 Rmu_sc0008191.1_g000003 Rmu_sc0017900.1_g000005 Rmu_sc0022727.1_g000002
rosa_roxburghii Rroxscaffold_2G00079920 Rroxscaffold_3G00255890 Rroxscaffold_4G00295340 Rroxscaffold_4G00296360 Rroxscaffold_4G00299640 Rroxscaffold_6G00388210
rosa_rugosa Rorug02G0466700 Rorug04G0123200 Rorug05G0074800 Rorug07G0202900
rosa_samantha Rh1DG134700 Rh3CG159000 Rh4AG331000 Rh5AG521100 Rh5BG136400 Rh5DG127300 Rh5DG383100 Rh5DG386100 Rh5DG458000 Rh6CG450400 Rh7CG233800 Rh7DG407100
rosa_wichuraiana Rw1G004960 Rw1G005730 Rw1G006360 Rw1G017400 Rw2G013190 Rw2G022210 Rw2G029640 Rw5G020910 Rw5G036930 Rw6G016200 Rw7G018170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 146, 925
AccBSI CCGCTC 1 cut(s) 1055
AciI CCGC 3 cut(s) 257, 602, 1055
AclWI GGATC 1 cut(s) 48
AcsI RAATTY 2 cut(s) 32, 818
AdeI CACNNNGTG 2 cut(s) 191, 1024
AfaI GTAC 2 cut(s) 163, 1003
AgsI TTSAA 6 cut(s) 37, 208, 673, 952, 1247, 1280
AluBI AGCT 3 cut(s) 548, 920, 1097
AluI AGCT 3 cut(s) 548, 920, 1097
Alw26I GTCTC 2 cut(s) 591, 1169
AlwI GGATC 1 cut(s) 48
AlwNI CAGNNNCTG 1 cut(s) 482
AoxI GGCC 2 cut(s) 141, 488
ApeKI GCWGC 1 cut(s) 377
ApoI RAATTY 2 cut(s) 32, 818
AspS9I GGNCC 1 cut(s) 630
AsuHPI GGTGA 1 cut(s) 1163
AvaII GGWCC 1 cut(s) 630
BanI GGYRCC 2 cut(s) 146, 925
BbsI GAAGAC 2 cut(s) 714, 1260
BbvI GCAGC 1 cut(s) 364
BccI CCATC 3 cut(s) 83, 319, 937
BciVI GTATCC 1 cut(s) 779
BclI TGATCA 1 cut(s) 465
BcoDI GTCTC 2 cut(s) 591, 1169
BfaI CTAG 2 cut(s) 959, 1098
BfmI CTRYAG 1 cut(s) 553
BfuI GTATCC 1 cut(s) 779
BisI GCNGC 1 cut(s) 378
BlpI GCTNAGC 1 cut(s) 447
BlsI GCNGC 1 cut(s) 379
BmcAI AGTACT 1 cut(s) 1003
Bme18I GGWCC 1 cut(s) 630
BmgT120I GGNCC 1 cut(s) 630
BmiI GGNNCC 3 cut(s) 148, 891, 927
BmsI GCATC 3 cut(s) 278, 589, 853
BpiI GAAGAC 2 cut(s) 714, 1260
BplI GAGNNNNNCTC 2 cut(s) 1114, 1146
Bpu1102I GCTNAGC 1 cut(s) 447
BpuEI CTTGAG 2 cut(s) 1214, 1280
BsaBI GATNNNNATC 1 cut(s) 329
BsaJI CCNNGG 1 cut(s) 913
BsaXI ACNNNNNCTCC 2 cut(s) 918, 948
Bse118I RCCGGY 1 cut(s) 143
Bse3DI GCAATG 1 cut(s) 259
Bse8I GATNNNNATC 1 cut(s) 329
BseDI CCNNGG 1 cut(s) 913
BseGI GGATG 6 cut(s) 265, 352, 424, 604, 1147, 1270
BseJI GATNNNNATC 1 cut(s) 329
BseMI GCAATG 1 cut(s) 259
BseMII CTCAG 1 cut(s) 438
BseRI GAGGAG 1 cut(s) 1042
BseXI GCAGC 1 cut(s) 364
BshFI GGCC 2 cut(s) 143, 490
BshNI GGYRCC 2 cut(s) 146, 925
BsiSI CCGG 1 cut(s) 144
BsmAI GTCTC 2 cut(s) 591, 1169
BsnI GGCC 2 cut(s) 143, 490
Bsp143I GATC 3 cut(s) 40, 465, 796
Bsp1720I GCTNAGC 1 cut(s) 447
Bsp19I CCATGG 1 cut(s) 913
BspACI CCGC 3 cut(s) 257, 602, 1055
BspANI GGCC 2 cut(s) 143, 490
BspCNI CTCAG 1 cut(s) 439
BspLI GGNNCC 3 cut(s) 148, 891, 927
BspPI GGATC 1 cut(s) 48
BspT107I GGYRCC 2 cut(s) 146, 925
BsrBI CCGCTC 1 cut(s) 1055
BsrDI GCAATG 1 cut(s) 259
BsrFI RCCGGY 1 cut(s) 143
BssAI RCCGGY 1 cut(s) 143
BssECI CCNNGG 1 cut(s) 913
BssMI GATC 3 cut(s) 40, 465, 796
BssT1I CCWWGG 1 cut(s) 913
Bst4CI ACNGT 1 cut(s) 23
Bst6I CTCTTC 2 cut(s) 501, 1167
BstAPI GCANNNNNTGC 2 cut(s) 53, 254
BstC8I GCNNGC 2 cut(s) 250, 842
BstDEI CTNAG 4 cut(s) 138, 447, 701, 773
BstDSI CCRYGG 1 cut(s) 913
BstF5I GGATG 6 cut(s) 265, 352, 424, 604, 1147, 1270
BstKTI GATC 3 cut(s) 43, 468, 799
BstMAI GTCTC 2 cut(s) 591, 1169
BstMBI GATC 3 cut(s) 40, 465, 796
BstMWI GCNNNNNNNGC 3 cut(s) 53, 155, 254
BstNSI RCATGY 1 cut(s) 844
BstSFI CTRYAG 1 cut(s) 553
BstV1I GCAGC 1 cut(s) 364
BstV2I GAAGAC 2 cut(s) 714, 1260
BsuI GTATCC 1 cut(s) 779
BsuRI GGCC 2 cut(s) 143, 490
BtgI CCRYGG 1 cut(s) 913
BtsCI GGATG 6 cut(s) 265, 352, 424, 604, 1147, 1270
BtsIMutI CAGTG 1 cut(s) 480
Cac8I GCNNGC 2 cut(s) 250, 842
CaiI CAGNNNCTG 1 cut(s) 482
Cfr10I RCCGGY 1 cut(s) 143
Cfr13I GGNCC 1 cut(s) 630
Csp6I GTAC 2 cut(s) 162, 1002
CviAII CATG 7 cut(s) 44, 189, 283, 841, 900, 914, 981
CviQI GTAC 2 cut(s) 162, 1002
DdeI CTNAG 4 cut(s) 138, 447, 701, 773
DpnI GATC 3 cut(s) 42, 467, 798
DpnII GATC 3 cut(s) 40, 465, 796
DraIII CACNNNGTG 2 cut(s) 191, 1024
Eam1104I CTCTTC 2 cut(s) 501, 1167
EarI CTCTTC 2 cut(s) 501, 1167
Eco130I CCWWGG 1 cut(s) 913
Eco147I AGGCCT 1 cut(s) 490
Eco47I GGWCC 1 cut(s) 630
EcoRI GAATTC 1 cut(s) 32
EcoT14I CCWWGG 1 cut(s) 913
EcoT22I ATGCAT 1 cut(s) 49
ErhI CCWWGG 1 cut(s) 913
FaeI CATG 7 cut(s) 47, 192, 286, 844, 903, 917, 984
FatI CATG 7 cut(s) 43, 188, 282, 840, 899, 913, 980
FbaI TGATCA 1 cut(s) 465
Fnu4HI GCNGC 1 cut(s) 378
FokI GGATG 6 cut(s) 272, 359, 431, 611, 1154, 1277
Fsp4HI GCNGC 1 cut(s) 378
FspBI CTAG 2 cut(s) 959, 1098
GluI GCNGC 1 cut(s) 378
HaeIII GGCC 2 cut(s) 143, 490
HapII CCGG 1 cut(s) 144
Hin1II CATG 7 cut(s) 47, 192, 286, 844, 903, 917, 984
HincII GTYRAC 2 cut(s) 811, 965
HindII GTYRAC 2 cut(s) 811, 965
HinfI GANTC 4 cut(s) 71, 208, 584, 673
HpaI GTTAAC 1 cut(s) 811
HpaII CCGG 1 cut(s) 144
HphI GGTGA 1 cut(s) 1163
Hpy166II GTNNAC 2 cut(s) 811, 965
Hpy188I TCNGA 2 cut(s) 678, 694
Hpy188III TCNNGA 3 cut(s) 220, 469, 581
Hpy8I GTNNAC 2 cut(s) 811, 965
HpyAV CCTTC 8 cut(s) 246, 367, 501, 795, 865, 958, 1182, 1226
HpyCH4III ACNGT 1 cut(s) 23
HpyCH4IV ACGT 2 cut(s) 275, 432
HpyF10VI GCNNNNNNNGC 3 cut(s) 53, 155, 254
HpyF3I CTNAG 4 cut(s) 138, 447, 701, 773
HpySE526I ACGT 2 cut(s) 275, 432
Hsp92II CATG 7 cut(s) 47, 192, 286, 844, 903, 917, 984
Ksp22I TGATCA 1 cut(s) 465
KspAI GTTAAC 1 cut(s) 811
Kzo9I GATC 3 cut(s) 40, 465, 796
LmnI GCTCC 4 cut(s) 130, 730, 889, 917
LpnPI CCDG 3 cut(s) 141, 157, 454
Lsp1109I GCAGC 1 cut(s) 364
LweI GCATC 3 cut(s) 278, 589, 853
MaeI CTAG 2 cut(s) 959, 1098
MaeII ACGT 2 cut(s) 275, 432
MaeIII GTNAC 1 cut(s) 1112
MalI GATC 3 cut(s) 42, 467, 798
MbiI CCGCTC 1 cut(s) 1055
MboI GATC 3 cut(s) 40, 465, 796
MfeI CAATTG 1 cut(s) 652
MluCI AATT 9 cut(s) 32, 395, 652, 763, 818, 826, 994, 1009, 1226
MlyI GAGTC 1 cut(s) 593
MmeI TCCRAC 2 cut(s) 1126, 1165
MnlI CCTC 9 cut(s) 3, 19, 285, 585, 750, 1020, 1023, 1142, 1255
Mph1103I ATGCAT 1 cut(s) 49
MseI TTAA 2 cut(s) 278, 810
MspI CCGG 1 cut(s) 144
MunI CAATTG 1 cut(s) 652
MwoI GCNNNNNNNGC 3 cut(s) 53, 155, 254
NcoI CCATGG 1 cut(s) 913
NdeII GATC 3 cut(s) 40, 465, 796
NlaIII CATG 7 cut(s) 47, 192, 286, 844, 903, 917, 984
NlaIV GGNNCC 3 cut(s) 148, 891, 927
NsiI ATGCAT 1 cut(s) 49
NspI RCATGY 1 cut(s) 844
PaeI GCATGC 1 cut(s) 844
PceI AGGCCT 1 cut(s) 490
PfeI GAWTC 3 cut(s) 71, 208, 673
PkrI GCNGC 1 cut(s) 379
PleI GAGTC 1 cut(s) 592
PpsI GAGTC 1 cut(s) 592
PspN4I GGNNCC 3 cut(s) 148, 891, 927
PspPI GGNCC 1 cut(s) 630
PstNI CAGNNNCTG 1 cut(s) 482
RsaI GTAC 2 cut(s) 163, 1003
RsaNI GTAC 2 cut(s) 162, 1002
SaqAI TTAA 2 cut(s) 278, 810
SatI GCNGC 1 cut(s) 378
Sau3AI GATC 3 cut(s) 40, 465, 796
Sau96I GGNCC 1 cut(s) 630
ScaI AGTACT 1 cut(s) 1003
SchI GAGTC 1 cut(s) 593
SfaNI GCATC 3 cut(s) 278, 589, 853
SfcI CTRYAG 1 cut(s) 553
SinI GGWCC 1 cut(s) 630
SmlI CTYRAG 2 cut(s) 1193, 1259
SmoI CTYRAG 2 cut(s) 1193, 1259
SphI GCATGC 1 cut(s) 844
Sse9I AATT 9 cut(s) 32, 395, 652, 763, 818, 826, 994, 1009, 1226
SseBI AGGCCT 1 cut(s) 490
SsiI CCGC 3 cut(s) 257, 602, 1055
SspI AATATT 1 cut(s) 226
SspMI CTAG 2 cut(s) 959, 1098
StuI AGGCCT 1 cut(s) 490
StyI CCWWGG 1 cut(s) 913
TaaI ACNGT 1 cut(s) 23
TaiI ACGT 2 cut(s) 278, 435
TaqI TCGA 2 cut(s) 799, 1272
TasI AATT 9 cut(s) 32, 395, 652, 763, 818, 826, 994, 1009, 1226
TatI WGTACW 2 cut(s) 161, 1001
TfiI GAWTC 3 cut(s) 71, 208, 673
Tru1I TTAA 2 cut(s) 278, 810
Tru9I TTAA 2 cut(s) 278, 810
TscAI CASTG 1 cut(s) 487
TseI GCWGC 1 cut(s) 377
TspRI CASTG 1 cut(s) 487
VpaK11BI GGWCC 1 cut(s) 630
XapI RAATTY 2 cut(s) 32, 818
XceI RCATGY 1 cut(s) 844
XcmI CCANNNNNNNNNTGG 1 cut(s) 82
XspI CTAG 2 cut(s) 959, 1098
ZrmI AGTACT 1 cut(s) 1003
Zsp2I ATGCAT 1 cut(s) 49
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.