FvH4_7g16804

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000421
Physical Location & Seq
Forward (+)
14359522 .. 14360569
1048 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g16804.t1

Sequence Viewer

Length: 678 bp
ATGTCTCGTTGGAGCAAGAGTAGCACACCCCTGCATTGTATGGCGCATTCATTAAATCCCAAGTATTACAGTTCGGAATGGCTTGCAGAAGATAATTCCAGAAAAGCTCCTCATCAAGATATTGATATTACTAGAGAAAGAAAAAATTGCATTTTGAAGTATTATGATGATGCAAATCAGCGGAGAGACGTTAATGTGGAGTACTCCAATTTTTCGTTGTGTATGGATGATTTTTATAATGTTGATGCAATGCATGATAGGTCCATCCTACACCCTTTGAAATGGTGGGCAGTTCATGGAGCTTCAGCACCAAGGCTTCAAGCCTTAGCATTCAAGTTGCTTGGGCAACCATCTTCATCCTCATGTTGCGAAAGGAATTGGAGTACTTATAAGTTCATACATTTCGCAACAAGAAACAAGATTACTCCACAAAGAGCGGAAGATTTGGTATTTGTACATACCAATCTTCGCCTTTTATCTAGAAGTAGCAACTCTTACAAACAAGGTCCGACTCAAATGTGGGATGTTGGAGGTGATCAATTTGATTCATTAGATGAAACTAATCTTGGGAGGCTCAAGTTTGAGGATCTTTCTCTTGATGAACCATCGTTGGAGGCTGTTTTGTTTGATCATGTTCATGAGAATGAGGATGATGTCTTTGTTGATCAAGTAGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT

Protein Analysis

226

Amino Acids

26.17

Weight (kDa)

5.54

Isoelectric Point (pI)

48.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dimer_Tnp_hAT PF05699 87 - 156 7e-13 hAT family C-terminal dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000421)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G08267
fragaria_vesca FvH4_2g14331 FvH4_2g16371 FvH4_2g26163 FvH4_3g42540 FvH4_4g02102 FvH4_4g12491 FvH4_4g35171 FvH4_5g06632 FvH4_5g06632 FvH4_5g06632 FvH4_5g08811 FvH4_5g08812 FvH4_5g23531 FvH4_6g10272 FvH4_6g40844 FvH4_7g16803 FvH4_7g16804
malus_domestica MD11G1099500.v1.1 MD17G1176800.v1.1
pyrus_communis pycom05g07840 pycom06g08730 pycom07g12010 pycom07g12020 pycom10g07270 pycom11g17470 pycom12g10610 pycom12g14240 pycom13g22040 pycom15g02440
rosa_chinensis RchiOBHm_Chr1g0371321 RchiOBHm_Chr2g0102701 RchiOBHm_Chr3g0465681 RchiOBHm_Chr4g0420941 RchiOBHm_Chr4g0434271 RchiOBHm_Chr4g0442721 RchiOBHm_Chr6g0262081 RchiOBHm_Chr6g0278171 RchiOBHm_Chr6g0294991 RchiOBHm_Chr6g0295001 RchiOBHm_Chr7g0205361 RchiOBHm_Chr7g0205371 RchiOBHm_Chr7g0223471
rosa_laevigata RLG00000005266
rosa_multiflora Rmu_sc0000493.1_g000033 Rmu_sc0000493.1_g000034 Rmu_sc0000507.1_g000007 Rmu_sc0000843.1_g000001 Rmu_sc0001075.1_g000033 Rmu_sc0002077.1_g000007 Rmu_sc0002077.1_g000008 Rmu_sc0002329.1_g000029 Rmu_sc0002539.1_g000077 Rmu_sc0002655.1_g000006 Rmu_sc0003127.1_g000020 Rmu_sc0003765.1_g000054 Rmu_sc0004368.1_g000023 Rmu_sc0004753.1_g000022 Rmu_sc0005297.1_g000014 Rmu_sc0007633.1_g000010 Rmu_sc0008164.1_g000005 Rmu_sc0008191.1_g000003 Rmu_sc0017900.1_g000005 Rmu_sc0022727.1_g000002
rosa_roxburghii Rroxscaffold_2G00079920 Rroxscaffold_3G00255890 Rroxscaffold_4G00295340 Rroxscaffold_4G00296360 Rroxscaffold_4G00299640 Rroxscaffold_6G00388210
rosa_rugosa Rorug02G0466700 Rorug04G0123200 Rorug05G0074800 Rorug07G0202900
rosa_samantha Rh1DG134700 Rh3CG159000 Rh4AG331000 Rh5AG521100 Rh5BG136400 Rh5DG127300 Rh5DG383100 Rh5DG386100 Rh5DG458000 Rh6CG450400 Rh7CG233800 Rh7DG407100
rosa_wichuraiana Rw1G004960 Rw1G005730 Rw1G006360 Rw1G017400 Rw2G013190 Rw2G022210 Rw2G029640 Rw5G020910 Rw5G036930 Rw6G016200 Rw7G018170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 237, 390
AccBSI CCGCTC 1 cut(s) 437
AccI GTMKAC 1 cut(s) 672
AciI CCGC 2 cut(s) 181, 437
AclWI GGATC 1 cut(s) 594
AcuI CTGAAG 1 cut(s) 288
AfaI GTAC 3 cut(s) 203, 385, 456
AgsI TTSAA 4 cut(s) 157, 280, 320, 334
AjuI GAANNNNNNNTTGG 2 cut(s) 549, 581
AluBI AGCT 2 cut(s) 107, 302
AluI AGCT 2 cut(s) 107, 302
Alw26I GTCTC 2 cut(s) 9, 180
AlwI GGATC 1 cut(s) 594
AspLEI GCGC 1 cut(s) 46
AspS9I GGNCC 2 cut(s) 261, 506
AsuHPI GGTGA 1 cut(s) 545
AvaII GGWCC 2 cut(s) 261, 506
BccI CCATC 3 cut(s) 272, 358, 613
BclI TGATCA 3 cut(s) 535, 628, 664
BcoDI GTCTC 2 cut(s) 9, 180
BfaI CTAG 3 cut(s) 132, 480, 676
BmcAI AGTACT 2 cut(s) 203, 385
Bme18I GGWCC 2 cut(s) 261, 506
BmgT120I GGNCC 2 cut(s) 261, 506
BmsI GCATC 2 cut(s) 160, 235
Bpu10I CCTNAGC 1 cut(s) 325
BpuEI CTTGAG 1 cut(s) 560
BsaBI GATNNNNATC 1 cut(s) 174
BsaJI CCNNGG 1 cut(s) 311
BsaXI ACNNNNNCTCC 1 cut(s) 34
Bse3DI GCAATG 1 cut(s) 255
Bse8I GATNNNNATC 1 cut(s) 174
BseDI CCNNGG 1 cut(s) 311
BseGI GGATG 5 cut(s) 232, 264, 356, 529, 655
BseJI GATNNNNATC 1 cut(s) 174
BseMI GCAATG 1 cut(s) 255
BseRI GAGGAG 1 cut(s) 99
BsmAI GTCTC 2 cut(s) 9, 180
BsmBI CGTCTC 1 cut(s) 180
BsmI GAATGC 2 cut(s) 46, 329
Bsp1407I TGTACA 1 cut(s) 454
Bsp143I GATC 4 cut(s) 535, 586, 628, 664
BspACI CCGC 2 cut(s) 181, 437
BspHI TCATGA 1 cut(s) 637
BspPI GGATC 1 cut(s) 594
BsrBI CCGCTC 1 cut(s) 437
BsrDI GCAATG 1 cut(s) 255
BsrGI TGTACA 1 cut(s) 454
BssECI CCNNGG 1 cut(s) 311
BssMI GATC 4 cut(s) 535, 586, 628, 664
BssT1I CCWWGG 1 cut(s) 311
Bst4CI ACNGT 1 cut(s) 71
BstAUI TGTACA 1 cut(s) 454
BstC8I GCNNGC 1 cut(s) 84
BstDEI CTNAG 1 cut(s) 325
BstF5I GGATG 5 cut(s) 232, 264, 356, 529, 655
BstHHI GCGC 1 cut(s) 46
BstKTI GATC 4 cut(s) 538, 589, 631, 667
BstMAI GTCTC 2 cut(s) 9, 180
BstMBI GATC 4 cut(s) 535, 586, 628, 664
BstMWI GCNNNNNNNGC 1 cut(s) 21
BstX2I RGATCY 1 cut(s) 586
BstYI RGATCY 1 cut(s) 586
BtsCI GGATG 5 cut(s) 232, 264, 356, 529, 655
Cac8I GCNNGC 1 cut(s) 84
CciI TCATGA 1 cut(s) 637
CfoI GCGC 1 cut(s) 46
Cfr13I GGNCC 2 cut(s) 261, 506
Csp6I GTAC 3 cut(s) 202, 384, 455
CviAII CATG 5 cut(s) 254, 296, 363, 632, 638
CviJI RGCY 7 cut(s) 82, 107, 302, 316, 323, 574, 617
CviKI_1 RGCY 7 cut(s) 82, 107, 302, 316, 323, 574, 617
CviQI GTAC 3 cut(s) 202, 384, 455
DdeI CTNAG 1 cut(s) 325
DpnI GATC 4 cut(s) 537, 588, 630, 666
DpnII GATC 4 cut(s) 535, 586, 628, 664
Eco130I CCWWGG 1 cut(s) 311
Eco47I GGWCC 2 cut(s) 261, 506
Eco57I CTGAAG 1 cut(s) 288
EcoT14I CCWWGG 1 cut(s) 311
EcoT22I ATGCAT 1 cut(s) 255
ErhI CCWWGG 1 cut(s) 311
Esp3I CGTCTC 1 cut(s) 180
FaeI CATG 5 cut(s) 257, 299, 366, 635, 641
FatI CATG 5 cut(s) 253, 295, 362, 631, 637
FbaI TGATCA 3 cut(s) 535, 628, 664
FblI GTMKAC 1 cut(s) 672
FokI GGATG 5 cut(s) 239, 251, 343, 536, 662
FspBI CTAG 3 cut(s) 132, 480, 676
GlaI GCGC 1 cut(s) 45
HhaI GCGC 1 cut(s) 46
Hin1II CATG 5 cut(s) 257, 299, 366, 635, 641
Hin6I GCGC 1 cut(s) 44
HinP1I GCGC 1 cut(s) 44
HinfI GANTC 2 cut(s) 511, 545
HphI GGTGA 1 cut(s) 545
Hpy166II GTNNAC 1 cut(s) 673
Hpy188I TCNGA 2 cut(s) 76, 510
Hpy188III TCNNGA 5 cut(s) 99, 116, 480, 596, 638
Hpy8I GTNNAC 1 cut(s) 673
HpyCH4III ACNGT 1 cut(s) 71
HpyCH4IV ACGT 1 cut(s) 189
HpyCH4V TGCA 6 cut(s) 34, 86, 150, 173, 248, 253
HpyF10VI GCNNNNNNNGC 1 cut(s) 21
HpyF3I CTNAG 1 cut(s) 325
HpySE526I ACGT 1 cut(s) 189
Hsp92II CATG 5 cut(s) 257, 299, 366, 635, 641
HspAI GCGC 1 cut(s) 44
Ksp22I TGATCA 3 cut(s) 535, 628, 664
Kzo9I GATC 4 cut(s) 535, 586, 628, 664
LmnI GCTCC 3 cut(s) 12, 112, 299
LpnPI CCDG 2 cut(s) 44, 112
LweI GCATC 2 cut(s) 160, 235
MaeI CTAG 3 cut(s) 132, 480, 676
MaeII ACGT 1 cut(s) 189
MalI GATC 4 cut(s) 537, 588, 630, 666
MbiI CCGCTC 1 cut(s) 437
MboI GATC 4 cut(s) 535, 586, 628, 664
MboII GAAGA 4 cut(s) 101, 345, 452, 458
MflI RGATCY 1 cut(s) 586
MluCI AATT 5 cut(s) 94, 145, 208, 376, 539
MlyI GAGTC 1 cut(s) 505
MmeI TCCRAC 3 cut(s) 508, 533, 591
MnlI CCTC 7 cut(s) 120, 370, 524, 564, 577, 607, 640
Mph1103I ATGCAT 1 cut(s) 255
MseI TTAA 2 cut(s) 53, 192
MslI CAYNNNNRTG 3 cut(s) 361, 636, 642
MspA1I CMGCKG 1 cut(s) 181
Mva1269I GAATGC 2 cut(s) 46, 329
MwoI GCNNNNNNNGC 1 cut(s) 21
NdeII GATC 4 cut(s) 535, 586, 628, 664
NlaIII CATG 5 cut(s) 257, 299, 366, 635, 641
NsiI ATGCAT 1 cut(s) 255
PagI TCATGA 1 cut(s) 637
PctI GAATGC 2 cut(s) 46, 329
PfeI GAWTC 1 cut(s) 545
PleI GAGTC 1 cut(s) 505
PpsI GAGTC 1 cut(s) 505
PsiI TTATAA 2 cut(s) 237, 390
PspPI GGNCC 2 cut(s) 261, 506
PsuI RGATCY 1 cut(s) 586
RsaI GTAC 3 cut(s) 203, 385, 456
RsaNI GTAC 3 cut(s) 202, 384, 455
RseI CAYNNNNRTG 3 cut(s) 361, 636, 642
SaqAI TTAA 2 cut(s) 53, 192
Sau3AI GATC 4 cut(s) 535, 586, 628, 664
Sau96I GGNCC 2 cut(s) 261, 506
ScaI AGTACT 2 cut(s) 203, 385
SchI GAGTC 1 cut(s) 505
SetI ASST 6 cut(s) 109, 192, 263, 304, 508, 535
SfaNI GCATC 2 cut(s) 160, 235
SinI GGWCC 2 cut(s) 261, 506
SmiMI CAYNNNNRTG 3 cut(s) 361, 636, 642
SmlI CTYRAG 1 cut(s) 575
SmoI CTYRAG 1 cut(s) 575
Sse9I AATT 5 cut(s) 94, 145, 208, 376, 539
SsiI CCGC 2 cut(s) 181, 437
SspMI CTAG 3 cut(s) 132, 480, 676
StyI CCWWGG 1 cut(s) 311
TaaI ACNGT 1 cut(s) 71
TaiI ACGT 1 cut(s) 192
TasI AATT 5 cut(s) 94, 145, 208, 376, 539
TatI WGTACW 3 cut(s) 201, 383, 454
TfiI GAWTC 1 cut(s) 545
Tru1I TTAA 2 cut(s) 53, 192
Tru9I TTAA 2 cut(s) 53, 192
TspDTI ATGAA 8 cut(s) 39, 284, 345, 385, 537, 570, 615, 626
VpaK11BI GGWCC 2 cut(s) 261, 506
XbaI TCTAGA 1 cut(s) 479
XmiI GTMKAC 1 cut(s) 672
XspI CTAG 3 cut(s) 132, 480, 676
ZrmI AGTACT 2 cut(s) 203, 385
Zsp2I ATGCAT 1 cut(s) 255
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.