MD11G1099500.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0000421
Physical Location & Seq
Reverse (-)
8316908 .. 8318616
1709 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1099500.v1.1.491

Sequence Viewer

Length: 447 bp
ATGTGCTTAAATGACTTTGGAGCTATTGATTCTATGAATGATAGGTTTCATTTGGAACCAGTGATGTTGTGGATTGTCCATGGAGCTTCTACACCTAGTCTCGAATCCATAGCATTGAAGCTACTTGGACAACCTTGTTCCTCCTCTTGTTGTGAAAGAAATTGGAGCACTTATAGTTTTGTTCACTCTCTAAGAAGGAACAAGATTACACCACAAAGAGCCAAGGATTTGGTATTTGTACATAATAATTTTCGTCTTCTATTAAGGAATAGCTCAACCTACAAAGAAAGTATTACTCAATTGGGGGATGTTGGAGGAGATGGCTTTGAAAACTTGGGTGAAGAAAGTGTCGGAATGCTTGAAATTGCTAACCTTTCACTTGATGAGCCGTCATTGGAGGCTTCTTTGGTTACTGTAGGAGACATCGTGAATGTGGAAGTTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Dimer_Tnp_hAT

Protein Analysis

149

Amino Acids

16.39

Weight (kDa)

4.81

Isoelectric Point (pI)

38.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dimer_Tnp_hAT PF05699 17 - 83 1e-10 hAT family C-terminal dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000421)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G08267
fragaria_vesca FvH4_2g14331 FvH4_2g16371 FvH4_2g26163 FvH4_3g42540 FvH4_4g02102 FvH4_4g12491 FvH4_4g35171 FvH4_5g06632 FvH4_5g06632 FvH4_5g06632 FvH4_5g08811 FvH4_5g08812 FvH4_5g23531 FvH4_6g10272 FvH4_6g40844 FvH4_7g16803 FvH4_7g16804
malus_domestica MD11G1099500.v1.1 MD17G1176800.v1.1
pyrus_communis pycom05g07840 pycom06g08730 pycom07g12010 pycom07g12020 pycom10g07270 pycom11g17470 pycom12g10610 pycom12g14240 pycom13g22040 pycom15g02440
rosa_chinensis RchiOBHm_Chr1g0371321 RchiOBHm_Chr2g0102701 RchiOBHm_Chr3g0465681 RchiOBHm_Chr4g0420941 RchiOBHm_Chr4g0434271 RchiOBHm_Chr4g0442721 RchiOBHm_Chr6g0262081 RchiOBHm_Chr6g0278171 RchiOBHm_Chr6g0294991 RchiOBHm_Chr6g0295001 RchiOBHm_Chr7g0205361 RchiOBHm_Chr7g0205371 RchiOBHm_Chr7g0223471
rosa_laevigata RLG00000005266
rosa_multiflora Rmu_sc0000493.1_g000033 Rmu_sc0000493.1_g000034 Rmu_sc0000507.1_g000007 Rmu_sc0000843.1_g000001 Rmu_sc0001075.1_g000033 Rmu_sc0002077.1_g000007 Rmu_sc0002077.1_g000008 Rmu_sc0002329.1_g000029 Rmu_sc0002539.1_g000077 Rmu_sc0002655.1_g000006 Rmu_sc0003127.1_g000020 Rmu_sc0003765.1_g000054 Rmu_sc0004368.1_g000023 Rmu_sc0004753.1_g000022 Rmu_sc0005297.1_g000014 Rmu_sc0007633.1_g000010 Rmu_sc0008164.1_g000005 Rmu_sc0008191.1_g000003 Rmu_sc0017900.1_g000005 Rmu_sc0022727.1_g000002
rosa_roxburghii Rroxscaffold_2G00079920 Rroxscaffold_3G00255890 Rroxscaffold_4G00295340 Rroxscaffold_4G00296360 Rroxscaffold_4G00299640 Rroxscaffold_6G00388210
rosa_rugosa Rorug02G0466700 Rorug04G0123200 Rorug05G0074800 Rorug07G0202900
rosa_samantha Rh1DG134700 Rh3CG159000 Rh4AG331000 Rh5AG521100 Rh5BG136400 Rh5DG127300 Rh5DG383100 Rh5DG386100 Rh5DG458000 Rh6CG450400 Rh7CG233800 Rh7DG407100
rosa_wichuraiana Rw1G004960 Rw1G005730 Rw1G006360 Rw1G017400 Rw2G013190 Rw2G022210 Rw2G029640 Rw5G020910 Rw5G036930 Rw6G016200 Rw7G018170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 240
AgsI TTSAA 4 cut(s) 118, 329, 362, 443
AluBI AGCT 4 cut(s) 23, 86, 121, 273
AluI AGCT 4 cut(s) 23, 86, 121, 273
Alw21I GWGCWC 1 cut(s) 170
Alw26I GTCTC 2 cut(s) 104, 414
AsuHPI GGTGA 1 cut(s) 350
BbsI GAAGAC 1 cut(s) 248
Bbv12I GWGCWC 1 cut(s) 170
BccI CCATC 1 cut(s) 314
BceAI ACGGC 1 cut(s) 373
BcoDI GTCTC 2 cut(s) 104, 414
BfaI CTAG 1 cut(s) 96
BfmI CTRYAG 1 cut(s) 414
BmiI GGNNCC 1 cut(s) 57
BpiI GAAGAC 1 cut(s) 248
BsaJI CCNNGG 2 cut(s) 79, 222
BsaXI ACNNNNNCTCC 2 cut(s) 411, 441
Bse1I ACTGG 1 cut(s) 59
BseDI CCNNGG 2 cut(s) 79, 222
BseGI GGATG 1 cut(s) 313
BseNI ACTGG 1 cut(s) 59
BseRI GAGGAG 2 cut(s) 133, 330
BsiHKAI GWGCWC 1 cut(s) 170
BsmAI GTCTC 2 cut(s) 104, 414
BsmI GAATGC 1 cut(s) 360
Bsp1286I GDGCHC 1 cut(s) 170
Bsp1407I TGTACA 1 cut(s) 238
Bsp19I CCATGG 1 cut(s) 79
BspLI GGNNCC 1 cut(s) 57
BsrGI TGTACA 1 cut(s) 238
BsrI ACTGG 1 cut(s) 59
BssECI CCNNGG 2 cut(s) 79, 222
BssT1I CCWWGG 2 cut(s) 79, 222
Bst4CI ACNGT 1 cut(s) 415
BstAUI TGTACA 1 cut(s) 238
BstDEI CTNAG 1 cut(s) 191
BstDSI CCRYGG 1 cut(s) 79
BstF5I GGATG 1 cut(s) 313
BstMAI GTCTC 2 cut(s) 104, 414
BstSFI CTRYAG 1 cut(s) 414
BstV2I GAAGAC 1 cut(s) 248
BstXI CCANNNNNNTGG 1 cut(s) 229
BtgI CCRYGG 1 cut(s) 79
BtsCI GGATG 1 cut(s) 313
BtsIMutI CAGTG 1 cut(s) 66
Csp6I GTAC 1 cut(s) 239
CviAII CATG 1 cut(s) 80
CviJI RGCY 8 cut(s) 23, 86, 121, 221, 273, 324, 388, 401
CviKI_1 RGCY 8 cut(s) 23, 86, 121, 221, 273, 324, 388, 401
CviQI GTAC 1 cut(s) 239
DdeI CTNAG 1 cut(s) 191
Eco130I CCWWGG 2 cut(s) 79, 222
EcoT14I CCWWGG 2 cut(s) 79, 222
ErhI CCWWGG 2 cut(s) 79, 222
FaeI CATG 1 cut(s) 83
FaiI YATR 5 cut(s) 35, 81, 110, 174, 243
FatI CATG 1 cut(s) 79
FokI GGATG 1 cut(s) 320
FspBI CTAG 1 cut(s) 96
Hin1II CATG 1 cut(s) 83
HinfI GANTC 2 cut(s) 29, 104
HphI GGTGA 1 cut(s) 350
Hpy166II GTNNAC 1 cut(s) 184
Hpy188I TCNGA 1 cut(s) 353
Hpy188III TCNNGA 2 cut(s) 101, 427
Hpy8I GTNNAC 1 cut(s) 184
HpyAV CCTTC 1 cut(s) 189
HpyCH4III ACNGT 1 cut(s) 415
HpyF3I CTNAG 1 cut(s) 191
Hsp92II CATG 1 cut(s) 83
LmnI GCTCC 3 cut(s) 20, 83, 165
LpnPI CCDG 1 cut(s) 72
MaeI CTAG 1 cut(s) 96
MaeIII GTNAC 1 cut(s) 409
MboII GAAGA 2 cut(s) 248, 353
MfeI CAATTG 1 cut(s) 299
MhlI GDGCHC 1 cut(s) 170
MluCI AATT 4 cut(s) 160, 247, 299, 363
MmeI TCCRAC 2 cut(s) 292, 331
MnlI CCTC 4 cut(s) 151, 154, 308, 391
MseI TTAA 2 cut(s) 8, 263
MunI CAATTG 1 cut(s) 299
Mva1269I GAATGC 1 cut(s) 360
NcoI CCATGG 1 cut(s) 79
NlaIII CATG 1 cut(s) 83
NlaIV GGNNCC 1 cut(s) 57
PctI GAATGC 1 cut(s) 360
PfeI GAWTC 2 cut(s) 29, 104
PspN4I GGNNCC 1 cut(s) 57
RsaI GTAC 1 cut(s) 240
RsaNI GTAC 1 cut(s) 239
SaqAI TTAA 2 cut(s) 8, 263
SduI GDGCHC 1 cut(s) 170
SetI ASST 9 cut(s) 25, 47, 88, 97, 123, 136, 275, 281, 375
SfcI CTRYAG 1 cut(s) 414
Sse9I AATT 4 cut(s) 160, 247, 299, 363
SspMI CTAG 1 cut(s) 96
StyI CCWWGG 2 cut(s) 79, 222
TaaI ACNGT 1 cut(s) 415
TaqI TCGA 1 cut(s) 102
TasI AATT 4 cut(s) 160, 247, 299, 363
TatI WGTACW 1 cut(s) 238
TfiI GAWTC 2 cut(s) 29, 104
Tru1I TTAA 2 cut(s) 8, 263
Tru9I TTAA 2 cut(s) 8, 263
TscAI CASTG 1 cut(s) 66
TspDTI ATGAA 2 cut(s) 38, 50
TspRI CASTG 1 cut(s) 66
XcmI CCANNNNNNNNNTGG 1 cut(s) 66
XspI CTAG 1 cut(s) 96
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.