Rmu_sc0017900.1_g000005

Protein of unknown function (DUF 659)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0017900.1
OG0000421
Physical Location & Seq
Forward (+)
12026 .. 13431
1406 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0017900.1_g000005.1.cds

Sequence Viewer

Length: 312 bp
atgaagcatgagccacttatcaacattattgcagcaaatagtagaggagcgttgtttctttatgctcaagatttttctgggatacaaaaaactggtgaagtgattgcttcctttatgcttactgcaattgaagatgtgggatcgtcaaatatcctccagatagttactgacaatgcaaaaaactgtgaatctgctgagaaagagattgaaaagaggattggcgacgactctgcgacggcaatgcttctgaagcgattggtggcgtcgccaatgcgtttggcgactgcaattgcgccgtcgcaagagcattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT

Protein Analysis

103

Amino Acids

11.13

Weight (kDa)

5.27

Isoelectric Point (pI)

56.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000421)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G08267
fragaria_vesca FvH4_2g14331 FvH4_2g16371 FvH4_2g26163 FvH4_3g42540 FvH4_4g02102 FvH4_4g12491 FvH4_4g35171 FvH4_5g06632 FvH4_5g06632 FvH4_5g06632 FvH4_5g08811 FvH4_5g08812 FvH4_5g23531 FvH4_6g10272 FvH4_6g40844 FvH4_7g16803 FvH4_7g16804
malus_domestica MD11G1099500.v1.1 MD17G1176800.v1.1
pyrus_communis pycom05g07840 pycom06g08730 pycom07g12010 pycom07g12020 pycom10g07270 pycom11g17470 pycom12g10610 pycom12g14240 pycom13g22040 pycom15g02440
rosa_chinensis RchiOBHm_Chr1g0371321 RchiOBHm_Chr2g0102701 RchiOBHm_Chr3g0465681 RchiOBHm_Chr4g0420941 RchiOBHm_Chr4g0434271 RchiOBHm_Chr4g0442721 RchiOBHm_Chr6g0262081 RchiOBHm_Chr6g0278171 RchiOBHm_Chr6g0294991 RchiOBHm_Chr6g0295001 RchiOBHm_Chr7g0205361 RchiOBHm_Chr7g0205371 RchiOBHm_Chr7g0223471
rosa_laevigata RLG00000005266
rosa_multiflora Rmu_sc0000493.1_g000033 Rmu_sc0000493.1_g000034 Rmu_sc0000507.1_g000007 Rmu_sc0000843.1_g000001 Rmu_sc0001075.1_g000033 Rmu_sc0002077.1_g000007 Rmu_sc0002077.1_g000008 Rmu_sc0002329.1_g000029 Rmu_sc0002539.1_g000077 Rmu_sc0002655.1_g000006 Rmu_sc0003127.1_g000020 Rmu_sc0003765.1_g000054 Rmu_sc0004368.1_g000023 Rmu_sc0004753.1_g000022 Rmu_sc0005297.1_g000014 Rmu_sc0007633.1_g000010 Rmu_sc0008164.1_g000005 Rmu_sc0008191.1_g000003 Rmu_sc0017900.1_g000005 Rmu_sc0022727.1_g000002
rosa_roxburghii Rroxscaffold_2G00079920 Rroxscaffold_3G00255890 Rroxscaffold_4G00295340 Rroxscaffold_4G00296360 Rroxscaffold_4G00299640 Rroxscaffold_6G00388210
rosa_rugosa Rorug02G0466700 Rorug04G0123200 Rorug05G0074800 Rorug07G0202900
rosa_samantha Rh1DG134700 Rh3CG159000 Rh4AG331000 Rh5AG521100 Rh5BG136400 Rh5DG127300 Rh5DG383100 Rh5DG386100 Rh5DG458000 Rh6CG450400 Rh7CG233800 Rh7DG407100
rosa_wichuraiana Rw1G004960 Rw1G005730 Rw1G006360 Rw1G017400 Rw2G013190 Rw2G022210 Rw2G029640 Rw5G020910 Rw5G036930 Rw6G016200 Rw7G018170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 148
AcuI CTGAAG 1 cut(s) 269
AcyI GRCGYC 1 cut(s) 263
AgsI TTSAA 2 cut(s) 131, 209
AjuI GAANNNNNNNTTGG 2 cut(s) 201, 233
AlwI GGATC 1 cut(s) 148
ApeKI GCWGC 1 cut(s) 32
AspLEI GCGC 1 cut(s) 295
AsuHPI GGTGA 1 cut(s) 107
BbvI GCAGC 1 cut(s) 44
BceAI ACGGC 2 cut(s) 252, 280
BcgI CGANNNNNNTGC 4 cut(s) 212, 223, 246, 257
BciVI GTATCC 1 cut(s) 75
BfuI GTATCC 1 cut(s) 75
BisI GCNGC 1 cut(s) 33
BlsI GCNGC 1 cut(s) 34
BpmI CTGGAG 1 cut(s) 140
BpuEI CTTGAG 1 cut(s) 51
BsaHI GRCGYC 1 cut(s) 263
Bse1I ACTGG 1 cut(s) 97
Bse3DI GCAATG 1 cut(s) 246
BseMI GCAATG 1 cut(s) 246
BseMII CTCAG 1 cut(s) 186
BseNI ACTGG 1 cut(s) 97
BseRI GAGGAG 1 cut(s) 60
BseXI GCAGC 1 cut(s) 44
Bsp143I GATC 1 cut(s) 140
BspCNI CTCAG 1 cut(s) 187
BspPI GGATC 1 cut(s) 148
BsrDI GCAATG 1 cut(s) 246
BsrI ACTGG 1 cut(s) 97
BssMI GATC 1 cut(s) 140
BssNI GRCGYC 1 cut(s) 263
Bst4CI ACNGT 1 cut(s) 185
BstACI GRCGYC 1 cut(s) 263
BstDEI CTNAG 1 cut(s) 195
BstHHI GCGC 1 cut(s) 295
BstKTI GATC 1 cut(s) 143
BstMBI GATC 1 cut(s) 140
BstMWI GCNNNNNNNGC 1 cut(s) 250
BstV1I GCAGC 1 cut(s) 44
BsuI GTATCC 1 cut(s) 75
CfoI GCGC 1 cut(s) 295
CseI GACGC 1 cut(s) 252
CviAII CATG 1 cut(s) 8
CviJI RGCY 1 cut(s) 13
CviKI_1 RGCY 1 cut(s) 13
DdeI CTNAG 1 cut(s) 195
DpnI GATC 1 cut(s) 142
DpnII GATC 1 cut(s) 140
Eco57I CTGAAG 1 cut(s) 269
FaeI CATG 1 cut(s) 11
FaiI YATR 3 cut(s) 9, 63, 116
FatI CATG 1 cut(s) 7
Fnu4HI GCNGC 1 cut(s) 33
Fsp4HI GCNGC 1 cut(s) 33
GlaI GCGC 1 cut(s) 294
GluI GCNGC 1 cut(s) 33
GsuI CTGGAG 1 cut(s) 140
HgaI GACGC 1 cut(s) 252
HhaI GCGC 1 cut(s) 295
Hin1I GRCGYC 1 cut(s) 263
Hin1II CATG 1 cut(s) 11
Hin6I GCGC 1 cut(s) 293
HinP1I GCGC 1 cut(s) 293
HinfI GANTC 2 cut(s) 188, 227
HphI GGTGA 1 cut(s) 107
Hpy188I TCNGA 1 cut(s) 249
Hpy188III TCNNGA 2 cut(s) 68, 157
Hpy99I CGWCG 4 cut(s) 227, 238, 268, 301
HpyCH4III ACNGT 1 cut(s) 185
HpyCH4V TGCA 4 cut(s) 32, 125, 176, 287
HpyF10VI GCNNNNNNNGC 1 cut(s) 250
HpyF3I CTNAG 1 cut(s) 195
Hsp92I GRCGYC 1 cut(s) 263
Hsp92II CATG 1 cut(s) 11
HspAI GCGC 1 cut(s) 293
Kzo9I GATC 1 cut(s) 140
LmnI GCTCC 1 cut(s) 47
LpnPI CCDG 3 cut(s) 63, 78, 170
Lsp1109I GCAGC 1 cut(s) 44
MaeIII GTNAC 1 cut(s) 163
MalI GATC 1 cut(s) 142
MboI GATC 1 cut(s) 140
MboII GAAGA 1 cut(s) 143
MfeI CAATTG 2 cut(s) 126, 288
MluCI AATT 2 cut(s) 126, 288
MlyI GAGTC 1 cut(s) 221
MnlI CCTC 3 cut(s) 38, 164, 207
MunI CAATTG 2 cut(s) 126, 288
MwoI GCNNNNNNNGC 1 cut(s) 250
NdeII GATC 1 cut(s) 140
NlaIII CATG 1 cut(s) 11
PfeI GAWTC 1 cut(s) 188
PkrI GCNGC 1 cut(s) 34
PleI GAGTC 1 cut(s) 221
PpsI GAGTC 1 cut(s) 221
SatI GCNGC 1 cut(s) 33
Sau3AI GATC 1 cut(s) 140
SchI GAGTC 1 cut(s) 221
SgeI CNNG 5 cut(s) 20, 80, 90, 105, 169
SmlI CTYRAG 1 cut(s) 66
SmoI CTYRAG 1 cut(s) 66
Sse9I AATT 2 cut(s) 126, 288
TaaI ACNGT 1 cut(s) 185
TasI AATT 2 cut(s) 126, 288
TfiI GAWTC 1 cut(s) 188
TseI GCWGC 1 cut(s) 32
TspDTI ATGAA 1 cut(s) 17
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.