Rroxscaffold_3G00255890

hAT family C-terminal dimerisation region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000421
Physical Location & Seq
Forward (+)
50311767 .. 50314144
2378 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00255890.1

Sequence Viewer

Length: 564 bp
ATGCTCAGAAAGCGGTACATCGATAGGCCTTCTCTTCATTTAGTGTATGAATGGTGGGATAGTATGATTGAGCAAGTGAAGAAGGCTATCTATAGGAAAGAAAGGAAGCAACCTCATGAAGAGTCTCCATTTTGGGATGCAGTGTATAAGGTTCTAATGGCTCGTTGGTCCAAGAGCAATACTTCTCTCAATTGCTTGGCACATTCATTGAATCCGAAGTATTATAGTTCGGAATGGCTTAGTGAAGATACTAATCGGGTTGCTCCCCACAAAGATTTAGAGATTACAAGGGAGAGGAAAAATTGTATCCTTAGATACTTTGCCAATGAAGATGACCGAAGGAAAGTTAACATAGAATTTGCTAATTTTTCTATGTGTATGCAAGAGTTTGGAAGTGGAGATGCTATGAAGGATAGGTTTATTATGGAGCCTATAACATGGTGGGCTGTCCATGGAGCTTCGGCTCCATCTCTCCAAGCCATAGCCTTCAAGGTTCTAGGTCAACCTTGTTCTTCTTCATGTTGTGAAAGAAATTGGAGTACTTACAATTTCATTCACTCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Dimer_Tnp_hAT

Protein Analysis

187

Amino Acids

22.2

Weight (kDa)

8.7

Isoelectric Point (pI)

48.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dimer_Tnp_hAT PF05699 141 - 181 3.7e-08 hAT family C-terminal dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000421)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G08267
fragaria_vesca FvH4_2g14331 FvH4_2g16371 FvH4_2g26163 FvH4_3g42540 FvH4_4g02102 FvH4_4g12491 FvH4_4g35171 FvH4_5g06632 FvH4_5g06632 FvH4_5g06632 FvH4_5g08811 FvH4_5g08812 FvH4_5g23531 FvH4_6g10272 FvH4_6g40844 FvH4_7g16803 FvH4_7g16804
malus_domestica MD11G1099500.v1.1 MD17G1176800.v1.1
pyrus_communis pycom05g07840 pycom06g08730 pycom07g12010 pycom07g12020 pycom10g07270 pycom11g17470 pycom12g10610 pycom12g14240 pycom13g22040 pycom15g02440
rosa_chinensis RchiOBHm_Chr1g0371321 RchiOBHm_Chr2g0102701 RchiOBHm_Chr3g0465681 RchiOBHm_Chr4g0420941 RchiOBHm_Chr4g0434271 RchiOBHm_Chr4g0442721 RchiOBHm_Chr6g0262081 RchiOBHm_Chr6g0278171 RchiOBHm_Chr6g0294991 RchiOBHm_Chr6g0295001 RchiOBHm_Chr7g0205361 RchiOBHm_Chr7g0205371 RchiOBHm_Chr7g0223471
rosa_laevigata RLG00000005266
rosa_multiflora Rmu_sc0000493.1_g000033 Rmu_sc0000493.1_g000034 Rmu_sc0000507.1_g000007 Rmu_sc0000843.1_g000001 Rmu_sc0001075.1_g000033 Rmu_sc0002077.1_g000007 Rmu_sc0002077.1_g000008 Rmu_sc0002329.1_g000029 Rmu_sc0002539.1_g000077 Rmu_sc0002655.1_g000006 Rmu_sc0003127.1_g000020 Rmu_sc0003765.1_g000054 Rmu_sc0004368.1_g000023 Rmu_sc0004753.1_g000022 Rmu_sc0005297.1_g000014 Rmu_sc0007633.1_g000010 Rmu_sc0008164.1_g000005 Rmu_sc0008191.1_g000003 Rmu_sc0017900.1_g000005 Rmu_sc0022727.1_g000002
rosa_roxburghii Rroxscaffold_2G00079920 Rroxscaffold_3G00255890 Rroxscaffold_4G00295340 Rroxscaffold_4G00296360 Rroxscaffold_4G00299640 Rroxscaffold_6G00388210
rosa_rugosa Rorug02G0466700 Rorug04G0123200 Rorug05G0074800 Rorug07G0202900
rosa_samantha Rh1DG134700 Rh3CG159000 Rh4AG331000 Rh5AG521100 Rh5BG136400 Rh5DG127300 Rh5DG383100 Rh5DG386100 Rh5DG458000 Rh6CG450400 Rh7CG233800 Rh7DG407100
rosa_wichuraiana Rw1G004960 Rw1G005730 Rw1G006360 Rw1G017400 Rw2G013190 Rw2G022210 Rw2G029640 Rw5G020910 Rw5G036930 Rw6G016200 Rw7G018170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 13
AcsI RAATTY 1 cut(s) 356
AfaI GTAC 2 cut(s) 17, 541
AgsI TTSAA 2 cut(s) 211, 490
AluBI AGCT 1 cut(s) 458
AluI AGCT 1 cut(s) 458
Alw26I GTCTC 1 cut(s) 129
AoxI GGCC 1 cut(s) 26
ApoI RAATTY 1 cut(s) 356
AspS9I GGNCC 1 cut(s) 168
AvaII GGWCC 1 cut(s) 168
BauI CACGAG 1 cut(s) 559
BccI CCATC 1 cut(s) 475
BciVI GTATCC 1 cut(s) 317
BcoDI GTCTC 1 cut(s) 129
BfaI CTAG 1 cut(s) 497
BfmI CTRYAG 1 cut(s) 91
BfuI GTATCC 1 cut(s) 317
BmcAI AGTACT 1 cut(s) 541
Bme18I GGWCC 1 cut(s) 168
BmgT120I GGNCC 1 cut(s) 168
BmiI GGNNCC 2 cut(s) 429, 465
BmsI GCATC 2 cut(s) 127, 391
Bsa29I ATCGAT 1 cut(s) 21
BsaBI GATNNNNATC 1 cut(s) 252
BsaJI CCNNGG 1 cut(s) 451
Bse8I GATNNNNATC 1 cut(s) 252
BseCI ATCGAT 1 cut(s) 21
BseDI CCNNGG 1 cut(s) 451
BseGI GGATG 1 cut(s) 142
BseJI GATNNNNATC 1 cut(s) 252
BseMII CTCAG 1 cut(s) 19
BshFI GGCC 1 cut(s) 28
BshVI ATCGAT 1 cut(s) 21
BsmAI GTCTC 1 cut(s) 129
BsnI GGCC 1 cut(s) 28
Bsp19I CCATGG 1 cut(s) 451
BspACI CCGC 1 cut(s) 13
BspANI GGCC 1 cut(s) 28
BspCNI CTCAG 1 cut(s) 18
BspDI ATCGAT 1 cut(s) 21
BspHI TCATGA 1 cut(s) 115
BspLI GGNNCC 2 cut(s) 429, 465
BssECI CCNNGG 1 cut(s) 451
BssSI CACGAG 1 cut(s) 559
BssT1I CCWWGG 1 cut(s) 451
Bst2BI CACGAG 1 cut(s) 559
Bst6I CTCTTC 2 cut(s) 39, 114
BstDEI CTNAG 3 cut(s) 5, 239, 311
BstDSI CCRYGG 1 cut(s) 451
BstF5I GGATG 1 cut(s) 142
BstMAI GTCTC 1 cut(s) 129
BstMWI GCNNNNNNNGC 1 cut(s) 10
BstSFI CTRYAG 1 cut(s) 91
Bsu15I ATCGAT 1 cut(s) 21
BsuI GTATCC 1 cut(s) 317
BsuRI GGCC 1 cut(s) 28
BsuTUI ATCGAT 1 cut(s) 21
BtgI CCRYGG 1 cut(s) 451
BtsCI GGATG 1 cut(s) 142
BtsI GCAGTG 1 cut(s) 147
BtsIMutI CAGTG 1 cut(s) 147
CciI TCATGA 1 cut(s) 115
Cfr13I GGNCC 1 cut(s) 168
ClaI ATCGAT 1 cut(s) 21
Csp6I GTAC 2 cut(s) 16, 540
CviAII CATG 4 cut(s) 116, 438, 452, 519
CviQI GTAC 2 cut(s) 16, 540
DdeI CTNAG 3 cut(s) 5, 239, 311
Eam1104I CTCTTC 2 cut(s) 39, 114
EarI CTCTTC 2 cut(s) 39, 114
Eco130I CCWWGG 1 cut(s) 451
Eco147I AGGCCT 1 cut(s) 28
Eco47I GGWCC 1 cut(s) 168
EcoT14I CCWWGG 1 cut(s) 451
ErhI CCWWGG 1 cut(s) 451
FaeI CATG 4 cut(s) 119, 441, 455, 522
FatI CATG 4 cut(s) 115, 437, 451, 518
FokI GGATG 1 cut(s) 149
FspBI CTAG 1 cut(s) 497
HaeIII GGCC 1 cut(s) 28
Hin1II CATG 4 cut(s) 119, 441, 455, 522
HincII GTYRAC 2 cut(s) 349, 503
HindII GTYRAC 2 cut(s) 349, 503
HinfI GANTC 2 cut(s) 122, 211
HpaI GTTAAC 1 cut(s) 349
Hpy166II GTNNAC 2 cut(s) 349, 503
Hpy188I TCNGA 3 cut(s) 8, 216, 232
Hpy188III TCNNGA 2 cut(s) 116, 561
Hpy8I GTNNAC 2 cut(s) 349, 503
HpyAV CCTTC 5 cut(s) 39, 76, 333, 403, 496
HpyCH4V TGCA 2 cut(s) 140, 382
HpyF10VI GCNNNNNNNGC 1 cut(s) 10
HpyF3I CTNAG 3 cut(s) 5, 239, 311
Hsp92II CATG 4 cut(s) 119, 441, 455, 522
KspAI GTTAAC 1 cut(s) 349
LmnI GCTCC 4 cut(s) 268, 427, 455, 469
LweI GCATC 2 cut(s) 127, 391
MaeI CTAG 1 cut(s) 497
MboII GAAGA 7 cut(s) 26, 91, 131, 257, 341, 504, 507
MfeI CAATTG 1 cut(s) 190
MluCI AATT 6 cut(s) 190, 301, 356, 364, 532, 547
MlyI GAGTC 1 cut(s) 131
MnlI CCTC 2 cut(s) 123, 288
MseI TTAA 1 cut(s) 348
MunI CAATTG 1 cut(s) 190
MwoI GCNNNNNNNGC 1 cut(s) 10
NcoI CCATGG 1 cut(s) 451
NlaIII CATG 4 cut(s) 119, 441, 455, 522
NlaIV GGNNCC 2 cut(s) 429, 465
PagI TCATGA 1 cut(s) 115
PceI AGGCCT 1 cut(s) 28
PfeI GAWTC 1 cut(s) 211
PleI GAGTC 1 cut(s) 130
PpsI GAGTC 1 cut(s) 130
PspN4I GGNNCC 2 cut(s) 429, 465
PspPI GGNCC 1 cut(s) 168
RsaI GTAC 2 cut(s) 17, 541
RsaNI GTAC 2 cut(s) 16, 540
SaqAI TTAA 1 cut(s) 348
Sau96I GGNCC 1 cut(s) 168
ScaI AGTACT 1 cut(s) 541
SchI GAGTC 1 cut(s) 131
SetI ASST 7 cut(s) 115, 153, 419, 460, 495, 502, 508
SfaNI GCATC 2 cut(s) 127, 391
SfcI CTRYAG 1 cut(s) 91
SinI GGWCC 1 cut(s) 168
Sse9I AATT 6 cut(s) 190, 301, 356, 364, 532, 547
SseBI AGGCCT 1 cut(s) 28
SsiI CCGC 1 cut(s) 13
SspMI CTAG 1 cut(s) 497
StuI AGGCCT 1 cut(s) 28
StyI CCWWGG 1 cut(s) 451
TaqI TCGA 1 cut(s) 21
TaqII GACCGA 1 cut(s) 351
TasI AATT 6 cut(s) 190, 301, 356, 364, 532, 547
TatI WGTACW 1 cut(s) 539
TfiI GAWTC 1 cut(s) 211
Tru1I TTAA 1 cut(s) 348
Tru9I TTAA 1 cut(s) 348
TscAI CASTG 1 cut(s) 147
TspDTI ATGAA 8 cut(s) 26, 63, 132, 195, 342, 422, 507, 541
TspRI CASTG 1 cut(s) 147
VpaK11BI GGWCC 1 cut(s) 168
XapI RAATTY 1 cut(s) 356
XspI CTAG 1 cut(s) 497
ZrmI AGTACT 1 cut(s) 541
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.