RchiOBHm_Chr6g0278171

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000421
Physical Location & Seq
Forward (+)
41133674 .. 41135219
1546 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ24955

Sequence Viewer

Length: 1386 bp
ATGTACTACACCGGTGGCTTATCTTTCAACTTAGCTAGAAATCCACACTATCGGAACTCCTACATTCGTGCTTCTACCCTTCCAGGCTACATTCCACCAGGCTACAATGCTCTAAGGACCACACTTCTTGCAAAAGAAAGGAAAAACATTGAGCATCATTTAGAGCCAATCAAGATTACATGGAAAGACAAAGGTGTGAGTCTTTGTAGTGATGGTTGGTCTGATGCACAAAGAAGACCACTGATTAATGTGATAGCCACTTGTGAGAGTGGTCCGATGATGTTGAGGGCTATAAACTGTGAGGGGGAATTCAAGGATCATGCATTGATTGCAGACTTGATTATAGATTCCATCAAGGAAGTGGGTTGGGAAAATGTTGTGCAAGTGATTACCGACAATGCTCCTATTTGTTCTAAGGCCGGTGCCTTGATAGCAAGTAAGTATCCTACTATTTTTTGGACACCATGTGTAGTGCATACTTTGAATCTTGCTGTCAAGAATATTTGCACACCTTCATTAGTTGCAAGCAATGCGGATGTGTTTGATGCATGTTGTTGGATACAGCCAGTTTATGAGGATGTTATGTTTATCAAGAACTTCATTATGAATCATGGAATGAGATTAGTGATGTTTAATGACCATTGCAATTTGAAGTTGCTTTCGGTTGCTCCCACAAGGTTTGCATCTACGTTAATCATGCTAAAGAGGTTTAGGCAAATCAGAAATGGTTTGCAACAGATGGTCATCAGTCCAAAGTGGGATGATTACAAAGAAGATGATGTTAGGAAGGCTGCTTCTGTGAAAGAGAAATTATTAGATGAGTTGCTATGGGATGACATTGATTACATCATTTCTTTTACTGAGCCTATCTATGAGATGATCAGGAGAGCAGACACTGATAGGCCTTCTCTTCATTTGGTGTATGAATGGTGGGATAGTATGATTGAGCAAGTAAAGAAAGCTATCTATAGGAAAGAAAGGAAGCAACCTCATGAAGAGTCTCCATTTTGGGATGCGGTGTATAAGGTTCTAATGGCTCGTTGGTCCAAGAGCAATACTTCTCTCAATTGCTTGGCACATTCATTGAATCCGAAGTATTATAGTTCGGAATGGCTTAGTGAAGATACTAATCGTGTTGCTCCCCACAAAGATTTAGAGATTACAAGGGAGAGGAAAAATTGTATCCTTAGATACTTTGCCAATGAAGATGATCGAAGGAAAGTTAACATAGAATTTGCCAATTTTTCTATGTGCATGCAAGAGTTTGGAAGTGGAGATTCTATGAAGGATAGGTTTATTATGGAGCCTATAACATGGTGGGCTGTCCATGGAGCTTCGGCACCATCTCTCCAAGCCATAGCCTTCAAGGTTCTAGGAACAAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT

Protein Analysis

461

Amino Acids

53.28

Weight (kDa)

7.9

Isoelectric Point (pI)

37.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF659 PF04937 33 - 176 8.1e-44 Domain of unknown function (DUF659)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000421)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G08267
fragaria_vesca FvH4_2g14331 FvH4_2g16371 FvH4_2g26163 FvH4_3g42540 FvH4_4g02102 FvH4_4g12491 FvH4_4g35171 FvH4_5g06632 FvH4_5g06632 FvH4_5g06632 FvH4_5g08811 FvH4_5g08812 FvH4_5g23531 FvH4_6g10272 FvH4_6g40844 FvH4_7g16803 FvH4_7g16804
malus_domestica MD11G1099500.v1.1 MD17G1176800.v1.1
pyrus_communis pycom05g07840 pycom06g08730 pycom07g12010 pycom07g12020 pycom10g07270 pycom11g17470 pycom12g10610 pycom12g14240 pycom13g22040 pycom15g02440
rosa_chinensis RchiOBHm_Chr1g0371321 RchiOBHm_Chr2g0102701 RchiOBHm_Chr3g0465681 RchiOBHm_Chr4g0420941 RchiOBHm_Chr4g0434271 RchiOBHm_Chr4g0442721 RchiOBHm_Chr6g0262081 RchiOBHm_Chr6g0278171 RchiOBHm_Chr6g0294991 RchiOBHm_Chr6g0295001 RchiOBHm_Chr7g0205361 RchiOBHm_Chr7g0205371 RchiOBHm_Chr7g0223471
rosa_laevigata RLG00000005266
rosa_multiflora Rmu_sc0000493.1_g000033 Rmu_sc0000493.1_g000034 Rmu_sc0000507.1_g000007 Rmu_sc0000843.1_g000001 Rmu_sc0001075.1_g000033 Rmu_sc0002077.1_g000007 Rmu_sc0002077.1_g000008 Rmu_sc0002329.1_g000029 Rmu_sc0002539.1_g000077 Rmu_sc0002655.1_g000006 Rmu_sc0003127.1_g000020 Rmu_sc0003765.1_g000054 Rmu_sc0004368.1_g000023 Rmu_sc0004753.1_g000022 Rmu_sc0005297.1_g000014 Rmu_sc0007633.1_g000010 Rmu_sc0008164.1_g000005 Rmu_sc0008191.1_g000003 Rmu_sc0017900.1_g000005 Rmu_sc0022727.1_g000002
rosa_roxburghii Rroxscaffold_2G00079920 Rroxscaffold_3G00255890 Rroxscaffold_4G00295340 Rroxscaffold_4G00296360 Rroxscaffold_4G00299640 Rroxscaffold_6G00388210
rosa_rugosa Rorug02G0466700 Rorug04G0123200 Rorug05G0074800 Rorug07G0202900
rosa_samantha Rh1DG134700 Rh3CG159000 Rh4AG331000 Rh5AG521100 Rh5BG136400 Rh5DG127300 Rh5DG383100 Rh5DG386100 Rh5DG458000 Rh6CG450400 Rh7CG233800 Rh7DG407100
rosa_wichuraiana Rw1G004960 Rw1G005730 Rw1G006360 Rw1G017400 Rw2G013190 Rw2G022210 Rw2G029640 Rw5G020910 Rw5G036930 Rw6G016200 Rw7G018170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 422, 1339
AciI CCGC 2 cut(s) 533, 1016
AclWI GGATC 1 cut(s) 324
AcsI RAATTY 2 cut(s) 308, 1232
AdeI CACNNNGTG 1 cut(s) 467
AfaI GTAC 1 cut(s) 5
AgeI ACCGGT 1 cut(s) 11
AgsI TTSAA 6 cut(s) 28, 313, 484, 652, 1087, 1366
AjnI CCWGG 2 cut(s) 82, 97
AluBI AGCT 3 cut(s) 35, 962, 1334
AluI AGCT 3 cut(s) 35, 962, 1334
Alw26I GTCTC 1 cut(s) 1005
AlwI GGATC 1 cut(s) 324
AlwNI CAGNNNCTG 1 cut(s) 896
AoxI GGCC 2 cut(s) 417, 902
ApeKI GCWGC 1 cut(s) 791
ApoI RAATTY 2 cut(s) 308, 1232
AseI ATTAAT 1 cut(s) 246
AsiGI ACCGGT 1 cut(s) 11
AspS9I GGNCC 3 cut(s) 117, 272, 1044
AvaII GGWCC 3 cut(s) 117, 272, 1044
BanI GGYRCC 2 cut(s) 422, 1339
BbsI GAAGAC 1 cut(s) 241
BbvI GCAGC 1 cut(s) 778
BccI CCATC 4 cut(s) 206, 359, 733, 1351
BciT130I CCWGG 2 cut(s) 84, 99
BciVI GTATCC 3 cut(s) 453, 552, 1193
BclI TGATCA 1 cut(s) 879
BcoDI GTCTC 1 cut(s) 1005
BfaI CTAG 2 cut(s) 36, 1373
BfmI CTRYAG 1 cut(s) 967
BfuI GTATCC 3 cut(s) 453, 552, 1193
BisI GCNGC 1 cut(s) 792
BlsI GCNGC 1 cut(s) 793
Bme1390I CCNGG 2 cut(s) 84, 99
Bme18I GGWCC 3 cut(s) 117, 272, 1044
BmgT120I GGNCC 3 cut(s) 117, 272, 1044
BmiI GGNNCC 3 cut(s) 424, 1305, 1341
BmrFI CCNGG 2 cut(s) 84, 99
BmsI GCATC 5 cut(s) 163, 214, 535, 692, 1003
BpiI GAAGAC 1 cut(s) 241
BsaBI GATNNNNATC 2 cut(s) 743, 1128
BsaJI CCNNGG 1 cut(s) 1327
BsaWI WCCGGW 1 cut(s) 11
BsaXI ACNNNNNCTCC 2 cut(s) 1332, 1362
Bse118I RCCGGY 2 cut(s) 11, 419
Bse1I ACTGG 1 cut(s) 566
Bse3DI GCAATG 2 cut(s) 535, 640
Bse8I GATNNNNATC 2 cut(s) 743, 1128
BseBI CCWGG 2 cut(s) 84, 99
BseDI CCNNGG 1 cut(s) 1327
BseGI GGATG 5 cut(s) 541, 583, 766, 838, 1018
BseJI GATNNNNATC 2 cut(s) 743, 1128
BseMI GCAATG 2 cut(s) 535, 640
BseMII CTCAG 1 cut(s) 852
BseNI ACTGG 1 cut(s) 566
BseXI GCAGC 1 cut(s) 778
BshFI GGCC 2 cut(s) 419, 904
BshNI GGYRCC 2 cut(s) 422, 1339
BshTI ACCGGT 1 cut(s) 11
BsiSI CCGG 2 cut(s) 12, 420
BsmAI GTCTC 1 cut(s) 1005
BsnI GGCC 2 cut(s) 419, 904
Bsp143I GATC 3 cut(s) 316, 879, 1210
Bsp19I CCATGG 1 cut(s) 1327
BspACI CCGC 2 cut(s) 533, 1016
BspANI GGCC 2 cut(s) 419, 904
BspCNI CTCAG 1 cut(s) 853
BspHI TCATGA 1 cut(s) 991
BspLI GGNNCC 3 cut(s) 424, 1305, 1341
BspPI GGATC 1 cut(s) 324
BspT107I GGYRCC 2 cut(s) 422, 1339
BsrDI GCAATG 2 cut(s) 535, 640
BsrFI RCCGGY 2 cut(s) 11, 419
BsrI ACTGG 1 cut(s) 566
BssAI RCCGGY 2 cut(s) 11, 419
BssECI CCNNGG 1 cut(s) 1327
BssMI GATC 3 cut(s) 316, 879, 1210
BssT1I CCWWGG 1 cut(s) 1327
Bst2UI CCWGG 2 cut(s) 84, 99
Bst4CI ACNGT 1 cut(s) 299
Bst6I CTCTTC 2 cut(s) 915, 990
BstAPI GCANNNNNTGC 2 cut(s) 329, 530
BstC8I GCNNGC 2 cut(s) 526, 1256
BstDEI CTNAG 6 cut(s) 31, 113, 414, 861, 1115, 1187
BstDSI CCRYGG 1 cut(s) 1327
BstF5I GGATG 5 cut(s) 541, 583, 766, 838, 1018
BstKTI GATC 3 cut(s) 319, 882, 1213
BstMAI GTCTC 1 cut(s) 1005
BstMBI GATC 3 cut(s) 316, 879, 1210
BstMWI GCNNNNNNNGC 3 cut(s) 329, 431, 530
BstNI CCWGG 2 cut(s) 84, 99
BstNSI RCATGY 2 cut(s) 552, 1258
BstSCI CCNGG 2 cut(s) 82, 97
BstSFI CTRYAG 1 cut(s) 967
BstV1I GCAGC 1 cut(s) 778
BstV2I GAAGAC 1 cut(s) 241
BsuI GTATCC 3 cut(s) 453, 552, 1193
BsuRI GGCC 2 cut(s) 419, 904
BtgI CCRYGG 1 cut(s) 1327
BtsCI GGATG 5 cut(s) 541, 583, 766, 838, 1018
BtsIMutI CAGTG 2 cut(s) 239, 894
Cac8I GCNNGC 2 cut(s) 526, 1256
CaiI CAGNNNCTG 1 cut(s) 896
CciI TCATGA 1 cut(s) 991
Cfr10I RCCGGY 2 cut(s) 11, 419
Cfr13I GGNCC 3 cut(s) 117, 272, 1044
Csp6I GTAC 1 cut(s) 4
CspAI ACCGGT 1 cut(s) 11
CspCI CAANNNNNGTGG 4 cut(s) 109, 144, 661, 696
CviQI GTAC 1 cut(s) 4
DdeI CTNAG 6 cut(s) 31, 113, 414, 861, 1115, 1187
DpnI GATC 3 cut(s) 318, 881, 1212
DpnII GATC 3 cut(s) 316, 879, 1210
DraIII CACNNNGTG 1 cut(s) 467
Eam1104I CTCTTC 2 cut(s) 915, 990
EarI CTCTTC 2 cut(s) 915, 990
Eco130I CCWWGG 1 cut(s) 1327
Eco147I AGGCCT 1 cut(s) 904
Eco47I GGWCC 3 cut(s) 117, 272, 1044
EcoRI GAATTC 1 cut(s) 308
EcoRII CCWGG 2 cut(s) 82, 97
EcoT14I CCWWGG 1 cut(s) 1327
EcoT22I ATGCAT 2 cut(s) 325, 550
ErhI CCWWGG 1 cut(s) 1327
FbaI TGATCA 1 cut(s) 879
Fnu4HI GCNGC 1 cut(s) 792
FokI GGATG 5 cut(s) 548, 590, 773, 845, 1025
Fsp4HI GCNGC 1 cut(s) 792
FspBI CTAG 2 cut(s) 36, 1373
GluI GCNGC 1 cut(s) 792
HaeIII GGCC 2 cut(s) 419, 904
HapII CCGG 2 cut(s) 12, 420
HincII GTYRAC 1 cut(s) 1225
HindII GTYRAC 1 cut(s) 1225
HinfI GANTC 7 cut(s) 199, 347, 484, 607, 998, 1087, 1277
HpaI GTTAAC 1 cut(s) 1225
HpaII CCGG 2 cut(s) 12, 420
Hpy166II GTNNAC 1 cut(s) 1225
Hpy188I TCNGA 6 cut(s) 54, 223, 276, 722, 1092, 1108
Hpy188III TCNNGA 5 cut(s) 172, 496, 592, 883, 992
Hpy8I GTNNAC 1 cut(s) 1225
HpyAV CCTTC 7 cut(s) 89, 522, 781, 915, 1209, 1279, 1372
HpyCH4III ACNGT 1 cut(s) 299
HpyCH4IV ACGT 1 cut(s) 689
HpyF10VI GCNNNNNNNGC 3 cut(s) 329, 431, 530
HpyF3I CTNAG 6 cut(s) 31, 113, 414, 861, 1115, 1187
HpySE526I ACGT 1 cut(s) 689
Ksp22I TGATCA 1 cut(s) 879
KspAI GTTAAC 1 cut(s) 1225
Kzo9I GATC 3 cut(s) 316, 879, 1210
LmnI GCTCC 5 cut(s) 406, 673, 1144, 1303, 1331
LpnPI CCDG 8 cut(s) 25, 69, 84, 96, 111, 433, 579, 868
Lsp1109I GCAGC 1 cut(s) 778
LweI GCATC 5 cut(s) 163, 214, 535, 692, 1003
MaeI CTAG 2 cut(s) 36, 1373
MaeII ACGT 1 cut(s) 689
MalI GATC 3 cut(s) 318, 881, 1212
MboI GATC 3 cut(s) 316, 879, 1210
MboII GAAGA 6 cut(s) 246, 785, 902, 1007, 1133, 1217
MfeI CAATTG 1 cut(s) 1066
MluCI AATT 7 cut(s) 308, 646, 809, 1066, 1177, 1232, 1240
MlyI GAGTC 2 cut(s) 208, 1007
MmeI TCCRAC 1 cut(s) 536
MnlI CCTC 6 cut(s) 279, 295, 568, 699, 999, 1164
Mph1103I ATGCAT 2 cut(s) 325, 550
MseI TTAA 4 cut(s) 246, 633, 692, 1224
MspI CCGG 2 cut(s) 12, 420
MspR9I CCNGG 2 cut(s) 84, 99
MunI CAATTG 1 cut(s) 1066
MvaI CCWGG 2 cut(s) 84, 99
MwoI GCNNNNNNNGC 3 cut(s) 329, 431, 530
NcoI CCATGG 1 cut(s) 1327
NdeII GATC 3 cut(s) 316, 879, 1210
NlaIV GGNNCC 3 cut(s) 424, 1305, 1341
NsiI ATGCAT 2 cut(s) 325, 550
NspI RCATGY 2 cut(s) 552, 1258
PaeI GCATGC 1 cut(s) 1258
PagI TCATGA 1 cut(s) 991
PceI AGGCCT 1 cut(s) 904
PfeI GAWTC 5 cut(s) 347, 484, 607, 1087, 1277
PinAI ACCGGT 1 cut(s) 11
PkrI GCNGC 1 cut(s) 793
PleI GAGTC 2 cut(s) 207, 1006
PpsI GAGTC 2 cut(s) 207, 1006
PshBI ATTAAT 1 cut(s) 246
Psp6I CCWGG 2 cut(s) 82, 97
PspGI CCWGG 2 cut(s) 82, 97
PspN4I GGNNCC 3 cut(s) 424, 1305, 1341
PspPI GGNCC 3 cut(s) 117, 272, 1044
PstNI CAGNNNCTG 1 cut(s) 896
RsaI GTAC 1 cut(s) 5
RsaNI GTAC 1 cut(s) 4
SaqAI TTAA 4 cut(s) 246, 633, 692, 1224
SatI GCNGC 1 cut(s) 792
Sau3AI GATC 3 cut(s) 316, 879, 1210
Sau96I GGNCC 3 cut(s) 117, 272, 1044
SchI GAGTC 2 cut(s) 208, 1007
ScrFI CCNGG 2 cut(s) 84, 99
SfaNI GCATC 5 cut(s) 163, 214, 535, 692, 1003
SfcI CTRYAG 1 cut(s) 967
SgrAI CRCCGGYG 1 cut(s) 11
SinI GGWCC 3 cut(s) 117, 272, 1044
SphI GCATGC 1 cut(s) 1258
Sse9I AATT 7 cut(s) 308, 646, 809, 1066, 1177, 1232, 1240
SseBI AGGCCT 1 cut(s) 904
SsiI CCGC 2 cut(s) 533, 1016
SspI AATATT 1 cut(s) 502
SspMI CTAG 2 cut(s) 36, 1373
StuI AGGCCT 1 cut(s) 904
StyD4I CCNGG 2 cut(s) 82, 97
StyI CCWWGG 1 cut(s) 1327
TaaI ACNGT 1 cut(s) 299
TaiI ACGT 1 cut(s) 692
TaqI TCGA 1 cut(s) 1213
TasI AATT 7 cut(s) 308, 646, 809, 1066, 1177, 1232, 1240
TatI WGTACW 1 cut(s) 3
TfiI GAWTC 5 cut(s) 347, 484, 607, 1087, 1277
Tru1I TTAA 4 cut(s) 246, 633, 692, 1224
Tru9I TTAA 4 cut(s) 246, 633, 692, 1224
TscAI CASTG 2 cut(s) 246, 901
TseI GCWGC 1 cut(s) 791
TspDTI ATGAA 9 cut(s) 504, 589, 620, 902, 939, 1008, 1071, 1218, 1298
TspRI CASTG 2 cut(s) 246, 901
VpaK11BI GGWCC 3 cut(s) 117, 272, 1044
VspI ATTAAT 1 cut(s) 246
XapI RAATTY 2 cut(s) 308, 1232
XceI RCATGY 2 cut(s) 552, 1258
XcmI CCANNNNNNNNNTGG 1 cut(s) 358
XspI CTAG 2 cut(s) 36, 1373
Zsp2I ATGCAT 2 cut(s) 325, 550
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.