Rw1G005730

hAT family C-terminal dimerisation region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000421
Physical Location & Seq
Reverse (-)
11541137 .. 11542577
1441 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G005730.1

Sequence Viewer

Length: 351 bp
ATGAGCAGCGGAGGAACACCTCCTATTAGTTCTAGTGCTGGGTCTGTTAACGCCTGTGCTAGTAGTGGATCTGCTGATCCTGAAAATGAGACCATAGATGATAAAGCACCATTGTGGAAATTTGTGAAGAAGAAAGATAAAATGTCAGGTGGAGGAAGTTGGAGGTATGTGAGTGCTATGATTTTAATATTAAAAACTCAGAAGCTTCTTCTTCTTCTTGGCCTTCTGGGGTCTGGAACAAGCACTTTCTTCAAGCAGTTTGAGGGGAAAGACACTTACACCCAAGAAGAGATTGATGTACTTCGAGTAGAGTGGGCAGAGCAGGTTGATGGGTATATCCAAGTTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Dimer_Tnp_hAT

Protein Analysis

116

Amino Acids

12.51

Weight (kDa)

5.07

Isoelectric Point (pI)

38.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000421)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G08267
fragaria_vesca FvH4_2g14331 FvH4_2g16371 FvH4_2g26163 FvH4_3g42540 FvH4_4g02102 FvH4_4g12491 FvH4_4g35171 FvH4_5g06632 FvH4_5g06632 FvH4_5g06632 FvH4_5g08811 FvH4_5g08812 FvH4_5g23531 FvH4_6g10272 FvH4_6g40844 FvH4_7g16803 FvH4_7g16804
malus_domestica MD11G1099500.v1.1 MD17G1176800.v1.1
pyrus_communis pycom05g07840 pycom06g08730 pycom07g12010 pycom07g12020 pycom10g07270 pycom11g17470 pycom12g10610 pycom12g14240 pycom13g22040 pycom15g02440
rosa_chinensis RchiOBHm_Chr1g0371321 RchiOBHm_Chr2g0102701 RchiOBHm_Chr3g0465681 RchiOBHm_Chr4g0420941 RchiOBHm_Chr4g0434271 RchiOBHm_Chr4g0442721 RchiOBHm_Chr6g0262081 RchiOBHm_Chr6g0278171 RchiOBHm_Chr6g0294991 RchiOBHm_Chr6g0295001 RchiOBHm_Chr7g0205361 RchiOBHm_Chr7g0205371 RchiOBHm_Chr7g0223471
rosa_laevigata RLG00000005266
rosa_multiflora Rmu_sc0000493.1_g000033 Rmu_sc0000493.1_g000034 Rmu_sc0000507.1_g000007 Rmu_sc0000843.1_g000001 Rmu_sc0001075.1_g000033 Rmu_sc0002077.1_g000007 Rmu_sc0002077.1_g000008 Rmu_sc0002329.1_g000029 Rmu_sc0002539.1_g000077 Rmu_sc0002655.1_g000006 Rmu_sc0003127.1_g000020 Rmu_sc0003765.1_g000054 Rmu_sc0004368.1_g000023 Rmu_sc0004753.1_g000022 Rmu_sc0005297.1_g000014 Rmu_sc0007633.1_g000010 Rmu_sc0008164.1_g000005 Rmu_sc0008191.1_g000003 Rmu_sc0017900.1_g000005 Rmu_sc0022727.1_g000002
rosa_roxburghii Rroxscaffold_2G00079920 Rroxscaffold_3G00255890 Rroxscaffold_4G00295340 Rroxscaffold_4G00296360 Rroxscaffold_4G00299640 Rroxscaffold_6G00388210
rosa_rugosa Rorug02G0466700 Rorug04G0123200 Rorug05G0074800 Rorug07G0202900
rosa_samantha Rh1DG134700 Rh3CG159000 Rh4AG331000 Rh5AG521100 Rh5BG136400 Rh5DG127300 Rh5DG383100 Rh5DG386100 Rh5DG458000 Rh6CG450400 Rh7CG233800 Rh7DG407100
rosa_wichuraiana Rw1G004960 Rw1G005730 Rw1G006360 Rw1G017400 Rw2G013190 Rw2G022210 Rw2G029640 Rw5G020910 Rw5G036930 Rw6G016200 Rw7G018170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 313
AciI CCGC 1 cut(s) 9
AclWI GGATC 2 cut(s) 71, 76
AcsI RAATTY 1 cut(s) 119
AfaI GTAC 1 cut(s) 300
AgsI TTSAA 1 cut(s) 253
AleI CACNNNNGTG 1 cut(s) 112
AluBI AGCT 1 cut(s) 205
AluI AGCT 1 cut(s) 205
Alw26I GTCTC 1 cut(s) 83
AlwI GGATC 2 cut(s) 71, 76
AoxI GGCC 1 cut(s) 220
ApeKI GCWGC 1 cut(s) 6
ApoI RAATTY 1 cut(s) 119
BbvI GCAGC 1 cut(s) 18
BccI CCATC 1 cut(s) 323
BcoDI GTCTC 1 cut(s) 83
BfaI CTAG 2 cut(s) 33, 60
BfuAI ACCTGC 1 cut(s) 313
BisI GCNGC 1 cut(s) 7
BlsI GCNGC 1 cut(s) 8
BsaI GGTCTC 1 cut(s) 83
BseMII CTCAG 1 cut(s) 212
BseXI GCAGC 1 cut(s) 18
BseYI CCCAGC 1 cut(s) 38
BshFI GGCC 1 cut(s) 222
BsmAI GTCTC 1 cut(s) 83
BsnI GGCC 1 cut(s) 222
Bso31I GGTCTC 1 cut(s) 83
Bsp143I GATC 2 cut(s) 68, 76
BspACI CCGC 1 cut(s) 9
BspANI GGCC 1 cut(s) 222
BspCNI CTCAG 1 cut(s) 211
BspMI ACCTGC 1 cut(s) 313
BspPI GGATC 2 cut(s) 71, 76
BspTNI GGTCTC 1 cut(s) 83
BssMI GATC 2 cut(s) 68, 76
Bst6I CTCTTC 1 cut(s) 282
BstDEI CTNAG 1 cut(s) 198
BstKTI GATC 2 cut(s) 71, 79
BstMAI GTCTC 1 cut(s) 83
BstMBI GATC 2 cut(s) 68, 76
BstV1I GCAGC 1 cut(s) 18
BstX2I RGATCY 1 cut(s) 68
BstYI RGATCY 1 cut(s) 68
BsuRI GGCC 1 cut(s) 222
BveI ACCTGC 1 cut(s) 313
Csp6I GTAC 1 cut(s) 299
CviAII CATG 1 cut(s) 348
CviJI RGCY 2 cut(s) 205, 222
CviKI_1 RGCY 2 cut(s) 205, 222
CviQI GTAC 1 cut(s) 299
DdeI CTNAG 1 cut(s) 198
DpnI GATC 2 cut(s) 70, 78
DpnII GATC 2 cut(s) 68, 76
Eam1104I CTCTTC 1 cut(s) 282
EarI CTCTTC 1 cut(s) 282
Eco31I GGTCTC 1 cut(s) 83
FaeI CATG 1 cut(s) 351
FaiI YATR 5 cut(s) 95, 168, 179, 336, 349
FatI CATG 1 cut(s) 347
Fnu4HI GCNGC 1 cut(s) 7
Fsp4HI GCNGC 1 cut(s) 7
FspBI CTAG 2 cut(s) 33, 60
GluI GCNGC 1 cut(s) 7
GsaI CCCAGC 1 cut(s) 42
HaeIII GGCC 1 cut(s) 222
Hin1II CATG 1 cut(s) 351
HincII GTYRAC 1 cut(s) 49
HindII GTYRAC 1 cut(s) 49
HindIII AAGCTT 1 cut(s) 203
HpaI GTTAAC 1 cut(s) 49
Hpy166II GTNNAC 1 cut(s) 49
Hpy188I TCNGA 1 cut(s) 201
Hpy188III TCNNGA 2 cut(s) 80, 234
Hpy8I GTNNAC 1 cut(s) 49
HpyAV CCTTC 1 cut(s) 233
HpyCH4V TGCA 1 cut(s) 347
HpyF3I CTNAG 1 cut(s) 198
Hsp92II CATG 1 cut(s) 351
KspAI GTTAAC 1 cut(s) 49
Kzo9I GATC 2 cut(s) 68, 76
LpnPI CCDG 7 cut(s) 24, 67, 93, 132, 212, 219, 308
Lsp1109I GCAGC 1 cut(s) 18
MaeI CTAG 2 cut(s) 33, 60
MalI GATC 2 cut(s) 70, 78
MboI GATC 2 cut(s) 68, 76
MboII GAAGA 7 cut(s) 139, 142, 200, 203, 206, 241, 299
MflI RGATCY 1 cut(s) 68
MluCI AATT 1 cut(s) 119
MmeI TCCRAC 1 cut(s) 140
MnlI CCTC 5 cut(s) 5, 30, 146, 156, 256
MseI TTAA 3 cut(s) 48, 185, 191
MslI CAYNNNNRTG 1 cut(s) 112
MspA1I CMGCKG 1 cut(s) 9
NdeII GATC 2 cut(s) 68, 76
NlaIII CATG 1 cut(s) 351
OliI CACNNNNGTG 1 cut(s) 112
PkrI GCNGC 1 cut(s) 8
PspFI CCCAGC 1 cut(s) 38
PsuI RGATCY 1 cut(s) 68
RsaI GTAC 1 cut(s) 300
RsaNI GTAC 1 cut(s) 299
RseI CAYNNNNRTG 1 cut(s) 112
SaqAI TTAA 3 cut(s) 48, 185, 191
SatI GCNGC 1 cut(s) 7
Sau3AI GATC 2 cut(s) 68, 76
SetI ASST 5 cut(s) 22, 151, 167, 207, 327
SmiMI CAYNNNNRTG 1 cut(s) 112
Sse9I AATT 1 cut(s) 119
SsiI CCGC 1 cut(s) 9
SspI AATATT 1 cut(s) 189
SspMI CTAG 2 cut(s) 33, 60
TaqI TCGA 1 cut(s) 304
TasI AATT 1 cut(s) 119
TatI WGTACW 1 cut(s) 298
Tru1I TTAA 3 cut(s) 48, 185, 191
Tru9I TTAA 3 cut(s) 48, 185, 191
TseI GCWGC 1 cut(s) 6
XapI RAATTY 1 cut(s) 119
XspI CTAG 2 cut(s) 33, 60
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.