Rroxscaffold_6G00388210

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000421
Physical Location & Seq
Reverse (-)
1035970 .. 1043356
7387 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00388210.1

Sequence Viewer

Length: 237 bp
ATGCAAATGCAACAGCAACAGATTCATCTACTAATGAGGGTGTTTGTGCATAATAATCTTCGGCTTTTATCAAGGAGAACTCCACAATACAAAAGTGGAGAGATGTGGGATATTAGAGGGGATGATTTTGACTCAATGGATACGGTTAATGGAGGTATTCTTGAGGTTGCCAACCTCTCTCTTGATGAACCGGACTTGGAGGGTGTAATCTTTGATGATGAGGATGAAGTTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT

Protein Analysis

78

Amino Acids

9.08

Weight (kDa)

4.21

Isoelectric Point (pI)

36.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000421)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G08267
fragaria_vesca FvH4_2g14331 FvH4_2g16371 FvH4_2g26163 FvH4_3g42540 FvH4_4g02102 FvH4_4g12491 FvH4_4g35171 FvH4_5g06632 FvH4_5g06632 FvH4_5g06632 FvH4_5g08811 FvH4_5g08812 FvH4_5g23531 FvH4_6g10272 FvH4_6g40844 FvH4_7g16803 FvH4_7g16804
malus_domestica MD11G1099500.v1.1 MD17G1176800.v1.1
pyrus_communis pycom05g07840 pycom06g08730 pycom07g12010 pycom07g12020 pycom10g07270 pycom11g17470 pycom12g10610 pycom12g14240 pycom13g22040 pycom15g02440
rosa_chinensis RchiOBHm_Chr1g0371321 RchiOBHm_Chr2g0102701 RchiOBHm_Chr3g0465681 RchiOBHm_Chr4g0420941 RchiOBHm_Chr4g0434271 RchiOBHm_Chr4g0442721 RchiOBHm_Chr6g0262081 RchiOBHm_Chr6g0278171 RchiOBHm_Chr6g0294991 RchiOBHm_Chr6g0295001 RchiOBHm_Chr7g0205361 RchiOBHm_Chr7g0205371 RchiOBHm_Chr7g0223471
rosa_laevigata RLG00000005266
rosa_multiflora Rmu_sc0000493.1_g000033 Rmu_sc0000493.1_g000034 Rmu_sc0000507.1_g000007 Rmu_sc0000843.1_g000001 Rmu_sc0001075.1_g000033 Rmu_sc0002077.1_g000007 Rmu_sc0002077.1_g000008 Rmu_sc0002329.1_g000029 Rmu_sc0002539.1_g000077 Rmu_sc0002655.1_g000006 Rmu_sc0003127.1_g000020 Rmu_sc0003765.1_g000054 Rmu_sc0004368.1_g000023 Rmu_sc0004753.1_g000022 Rmu_sc0005297.1_g000014 Rmu_sc0007633.1_g000010 Rmu_sc0008164.1_g000005 Rmu_sc0008191.1_g000003 Rmu_sc0017900.1_g000005 Rmu_sc0022727.1_g000002
rosa_roxburghii Rroxscaffold_2G00079920 Rroxscaffold_3G00255890 Rroxscaffold_4G00295340 Rroxscaffold_4G00296360 Rroxscaffold_4G00299640 Rroxscaffold_6G00388210
rosa_rugosa Rorug02G0466700 Rorug04G0123200 Rorug05G0074800 Rorug07G0202900
rosa_samantha Rh1DG134700 Rh3CG159000 Rh4AG331000 Rh5AG521100 Rh5BG136400 Rh5DG127300 Rh5DG383100 Rh5DG386100 Rh5DG458000 Rh6CG450400 Rh7CG233800 Rh7DG407100
rosa_wichuraiana Rw1G004960 Rw1G005730 Rw1G006360 Rw1G017400 Rw2G013190 Rw2G022210 Rw2G029640 Rw5G020910 Rw5G036930 Rw6G016200 Rw7G018170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
BciVI GTATCC 1 cut(s) 133
BfuI GTATCC 1 cut(s) 133
BpuEI CTTGAG 1 cut(s) 182
BsaWI WCCGGW 1 cut(s) 190
BseGI GGATG 2 cut(s) 127, 229
BsiSI CCGG 1 cut(s) 191
Bst4CI ACNGT 1 cut(s) 145
BstF5I GGATG 2 cut(s) 127, 229
BsuI GTATCC 1 cut(s) 133
BtsCI GGATG 2 cut(s) 127, 229
CviJI RGCY 1 cut(s) 64
CviKI_1 RGCY 1 cut(s) 64
FaiI YATR 1 cut(s) 51
FokI GGATG 1 cut(s) 134
HapII CCGG 1 cut(s) 191
HinfI GANTC 2 cut(s) 22, 131
HpaII CCGG 1 cut(s) 191
Hpy188III TCNNGA 2 cut(s) 161, 182
HpyCH4III ACNGT 1 cut(s) 145
HpyCH4V TGCA 3 cut(s) 4, 10, 49
LpnPI CCDG 1 cut(s) 204
MboII GAAGA 1 cut(s) 50
MlyI GAGTC 1 cut(s) 125
MnlI CCTC 7 cut(s) 30, 110, 146, 157, 185, 193, 214
MseI TTAA 1 cut(s) 147
MspI CCGG 1 cut(s) 191
PfeI GAWTC 1 cut(s) 22
PleI GAGTC 1 cut(s) 125
PpsI GAGTC 1 cut(s) 125
SaqAI TTAA 1 cut(s) 147
SchI GAGTC 1 cut(s) 125
SetI ASST 3 cut(s) 157, 168, 177
SgeI CNNG 5 cut(s) 84, 173, 194, 203, 208
SmlI CTYRAG 1 cut(s) 161
SmoI CTYRAG 1 cut(s) 161
TaaI ACNGT 1 cut(s) 145
TfiI GAWTC 1 cut(s) 22
Tru1I TTAA 1 cut(s) 147
Tru9I TTAA 1 cut(s) 147
TspDTI ATGAA 2 cut(s) 14, 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.