Rh4AG331000

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0000421
Physical Location & Seq
Reverse (-)
64117950 .. 64118249
300 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG331000.1

Sequence Viewer

Length: 300 bp
ATGAGCGATGCAAATGTAACAGCAACATATTCATCTACTAATGAGGGTGAACCCAGTGGAAGTGTGGGAGATAATAATAAGGGTTCTCCTTTGTGGAAATTTGTTACGGTCCTTGTTCAACCTAAGAAAGGTGAAGGAGGCAATTGTACATTCAAGTGTCATTTTTGCAATGGTACTTTCCATGGATCACATTATAGAGTGAGGTTGCATCTTCTCAAGATTAGTGGCAAAGGGATTAGAATATGTAGGTCAATCCCGGACGAGAAGAAAAGAGAGGTTGAAGGCTTGGTAGAACTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT

Protein Analysis

99

Amino Acids

10.85

Weight (kDa)

9.0

Isoelectric Point (pI)

32.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000421)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G08267
fragaria_vesca FvH4_2g14331 FvH4_2g16371 FvH4_2g26163 FvH4_3g42540 FvH4_4g02102 FvH4_4g12491 FvH4_4g35171 FvH4_5g06632 FvH4_5g06632 FvH4_5g06632 FvH4_5g08811 FvH4_5g08812 FvH4_5g23531 FvH4_6g10272 FvH4_6g40844 FvH4_7g16803 FvH4_7g16804
malus_domestica MD11G1099500.v1.1 MD17G1176800.v1.1
pyrus_communis pycom05g07840 pycom06g08730 pycom07g12010 pycom07g12020 pycom10g07270 pycom11g17470 pycom12g10610 pycom12g14240 pycom13g22040 pycom15g02440
rosa_chinensis RchiOBHm_Chr1g0371321 RchiOBHm_Chr2g0102701 RchiOBHm_Chr3g0465681 RchiOBHm_Chr4g0420941 RchiOBHm_Chr4g0434271 RchiOBHm_Chr4g0442721 RchiOBHm_Chr6g0262081 RchiOBHm_Chr6g0278171 RchiOBHm_Chr6g0294991 RchiOBHm_Chr6g0295001 RchiOBHm_Chr7g0205361 RchiOBHm_Chr7g0205371 RchiOBHm_Chr7g0223471
rosa_laevigata RLG00000005266
rosa_multiflora Rmu_sc0000493.1_g000033 Rmu_sc0000493.1_g000034 Rmu_sc0000507.1_g000007 Rmu_sc0000843.1_g000001 Rmu_sc0001075.1_g000033 Rmu_sc0002077.1_g000007 Rmu_sc0002077.1_g000008 Rmu_sc0002329.1_g000029 Rmu_sc0002539.1_g000077 Rmu_sc0002655.1_g000006 Rmu_sc0003127.1_g000020 Rmu_sc0003765.1_g000054 Rmu_sc0004368.1_g000023 Rmu_sc0004753.1_g000022 Rmu_sc0005297.1_g000014 Rmu_sc0007633.1_g000010 Rmu_sc0008164.1_g000005 Rmu_sc0008191.1_g000003 Rmu_sc0017900.1_g000005 Rmu_sc0022727.1_g000002
rosa_roxburghii Rroxscaffold_2G00079920 Rroxscaffold_3G00255890 Rroxscaffold_4G00295340 Rroxscaffold_4G00296360 Rroxscaffold_4G00299640 Rroxscaffold_6G00388210
rosa_rugosa Rorug02G0466700 Rorug04G0123200 Rorug05G0074800 Rorug07G0202900
rosa_samantha Rh1DG134700 Rh3CG159000 Rh4AG331000 Rh5AG521100 Rh5BG136400 Rh5DG127300 Rh5DG383100 Rh5DG386100 Rh5DG458000 Rh6CG450400 Rh7CG233800 Rh7DG407100
rosa_wichuraiana Rw1G004960 Rw1G005730 Rw1G006360 Rw1G017400 Rw2G013190 Rw2G022210 Rw2G029640 Rw5G020910 Rw5G036930 Rw6G016200 Rw7G018170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 193
AcsI RAATTY 1 cut(s) 98
AfaI GTAC 2 cut(s) 148, 175
AfiI CCNNNNNNNGG 1 cut(s) 128
AgsI TTSAA 3 cut(s) 119, 154, 281
AlwI GGATC 1 cut(s) 193
ApoI RAATTY 1 cut(s) 98
AspS9I GGNCC 1 cut(s) 109
AsuC2I CCSGG 1 cut(s) 257
AsuHPI GGTGA 2 cut(s) 59, 143
AvaII GGWCC 1 cut(s) 109
BcnI CCSGG 1 cut(s) 257
BfmI CTRYAG 1 cut(s) 296
Bme1390I CCNGG 1 cut(s) 257
Bme18I GGWCC 1 cut(s) 109
BmgT120I GGNCC 1 cut(s) 109
BmrFI CCNGG 1 cut(s) 257
BmrI ACTGGG 1 cut(s) 48
BmsI GCATC 1 cut(s) 217
BmuI ACTGGG 1 cut(s) 48
BpuEI CTTGAG 1 cut(s) 200
BpuMI CCSGG 1 cut(s) 257
BsaJI CCNNGG 1 cut(s) 181
Bsc4I CCNNNNNNNGG 1 cut(s) 128
Bse1I ACTGG 1 cut(s) 54
Bse3DI GCAATG 1 cut(s) 175
BseDI CCNNGG 1 cut(s) 181
BseLI CCNNNNNNNGG 1 cut(s) 128
BseMI GCAATG 1 cut(s) 175
BseNI ACTGG 1 cut(s) 54
BsiSI CCGG 1 cut(s) 257
BslI CCNNNNNNNGG 1 cut(s) 128
Bsp1407I TGTACA 1 cut(s) 146
Bsp143I GATC 1 cut(s) 185
Bsp19I CCATGG 1 cut(s) 181
BspPI GGATC 1 cut(s) 193
BsrDI GCAATG 1 cut(s) 175
BsrGI TGTACA 1 cut(s) 146
BsrI ACTGG 1 cut(s) 54
BssECI CCNNGG 1 cut(s) 181
BssMI GATC 1 cut(s) 185
BssT1I CCWWGG 1 cut(s) 181
Bst4CI ACNGT 1 cut(s) 109
BstAUI TGTACA 1 cut(s) 146
BstDEI CTNAG 1 cut(s) 123
BstDSI CCRYGG 1 cut(s) 181
BstENI CCTNNNNNAGG 1 cut(s) 126
BstKTI GATC 1 cut(s) 188
BstMBI GATC 1 cut(s) 185
BstSCI CCNGG 1 cut(s) 255
BstSFI CTRYAG 1 cut(s) 296
BtgI CCRYGG 1 cut(s) 181
BtgZI GCGATG 1 cut(s) 21
BtsIMutI CAGTG 1 cut(s) 61
Cfr13I GGNCC 1 cut(s) 109
Csp6I GTAC 2 cut(s) 147, 174
CspCI CAANNNNNGTGG 2 cut(s) 205, 240
CviAII CATG 1 cut(s) 182
CviJI RGCY 1 cut(s) 285
CviKI_1 RGCY 1 cut(s) 285
CviQI GTAC 2 cut(s) 147, 174
DdeI CTNAG 1 cut(s) 123
DpnI GATC 1 cut(s) 187
DpnII GATC 1 cut(s) 185
Eco130I CCWWGG 1 cut(s) 181
Eco47I GGWCC 1 cut(s) 109
EcoNI CCTNNNNNAGG 1 cut(s) 126
EcoT14I CCWWGG 1 cut(s) 181
ErhI CCWWGG 1 cut(s) 181
FaeI CATG 1 cut(s) 185
FaiI YATR 5 cut(s) 28, 183, 195, 244, 298
FatI CATG 1 cut(s) 181
HapII CCGG 1 cut(s) 257
Hin1II CATG 1 cut(s) 185
HpaII CCGG 1 cut(s) 257
HphI GGTGA 2 cut(s) 59, 143
Hpy166II GTNNAC 1 cut(s) 50
Hpy188III TCNNGA 1 cut(s) 217
Hpy8I GTNNAC 1 cut(s) 50
HpyAV CCTTC 2 cut(s) 128, 275
HpyCH4III ACNGT 1 cut(s) 109
HpyCH4V TGCA 3 cut(s) 11, 168, 208
HpyF3I CTNAG 1 cut(s) 123
Hsp92II CATG 1 cut(s) 185
Kzo9I GATC 1 cut(s) 185
LpnPI CCDG 2 cut(s) 67, 270
LweI GCATC 1 cut(s) 217
MaeIII GTNAC 2 cut(s) 16, 103
MalI GATC 1 cut(s) 187
MboI GATC 1 cut(s) 185
MboII GAAGA 2 cut(s) 203, 277
MfeI CAATTG 1 cut(s) 142
MluCI AATT 2 cut(s) 98, 142
MnlI CCTC 4 cut(s) 37, 131, 195, 268
MslI CAYNNNNRTG 1 cut(s) 154
MspI CCGG 1 cut(s) 257
MspR9I CCNGG 1 cut(s) 257
MunI CAATTG 1 cut(s) 142
NciI CCSGG 1 cut(s) 257
NcoI CCATGG 1 cut(s) 181
NdeII GATC 1 cut(s) 185
NlaIII CATG 1 cut(s) 185
PfoI TCCNGGA 1 cut(s) 255
PspPI GGNCC 1 cut(s) 109
RsaI GTAC 2 cut(s) 148, 175
RsaNI GTAC 2 cut(s) 147, 174
RseI CAYNNNNRTG 1 cut(s) 154
Sau3AI GATC 1 cut(s) 185
Sau96I GGNCC 1 cut(s) 109
ScrFI CCNGG 1 cut(s) 257
SetI ASST 5 cut(s) 124, 133, 206, 251, 279
SfaNI GCATC 1 cut(s) 217
SfcI CTRYAG 1 cut(s) 296
SgeI CNNG 8 cut(s) 66, 125, 166, 194, 229, 268, 269, 274
SinI GGWCC 1 cut(s) 109
SmiMI CAYNNNNRTG 1 cut(s) 154
SmlI CTYRAG 1 cut(s) 215
SmoI CTYRAG 1 cut(s) 215
Sse9I AATT 2 cut(s) 98, 142
StyD4I CCNGG 1 cut(s) 255
StyI CCWWGG 1 cut(s) 181
TaaI ACNGT 1 cut(s) 109
TasI AATT 2 cut(s) 98, 142
TatI WGTACW 1 cut(s) 146
TscAI CASTG 1 cut(s) 61
TspDTI ATGAA 1 cut(s) 21
TspRI CASTG 1 cut(s) 61
VpaK11BI GGWCC 1 cut(s) 109
XagI CCTNNNNNAGG 1 cut(s) 126
XapI RAATTY 1 cut(s) 98
XcmI CCANNNNNNNNNTGG 1 cut(s) 61
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.