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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 1207 |
| AciI | CCGC | 2 cut(s) | 95, 884 |
| AcsI | RAATTY | 2 cut(s) | 491, 1100 |
| AfaI | GTAC | 2 cut(s) | 188, 1285 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 74 |
| AgeI | ACCGGT | 1 cut(s) | 194 |
| AgsI | TTSAA | 7 cut(s) | 131, 211, 496, 955, 1234, 1430, 1574 |
| AjnI | CCWGG | 2 cut(s) | 265, 280 |
| AluBI | AGCT | 7 cut(s) | 47, 116, 218, 740, 830, 1202, 1379 |
| AluI | AGCT | 7 cut(s) | 47, 116, 218, 740, 830, 1202, 1379 |
| Alw26I | GTCTC | 3 cut(s) | 25, 873, 1451 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 119, 764 |
| AoxI | GGCC | 3 cut(s) | 135, 600, 770 |
| ApeKI | GCWGC | 4 cut(s) | 44, 116, 737, 1171 |
| ApoI | RAATTY | 2 cut(s) | 491, 1100 |
| AseI | ATTAAT | 1 cut(s) | 429 |
| AsiGI | ACCGGT | 1 cut(s) | 194 |
| AspS9I | GGNCC | 3 cut(s) | 300, 455, 912 |
| AsuHPI | GGTGA | 1 cut(s) | 25 |
| AvaII | GGWCC | 3 cut(s) | 300, 455, 912 |
| BanI | GGYRCC | 1 cut(s) | 1207 |
| BbsI | GAAGAC | 2 cut(s) | 424, 1554 |
| BbvI | GCAGC | 4 cut(s) | 56, 103, 749, 1183 |
| BccI | CCATC | 4 cut(s) | 76, 389, 679, 1219 |
| BciT130I | CCWGG | 2 cut(s) | 267, 282 |
| BciVI | GTATCC | 1 cut(s) | 1061 |
| BclI | TGATCA | 2 cut(s) | 747, 1534 |
| BcoDI | GTCTC | 3 cut(s) | 25, 873, 1451 |
| BfaI | CTAG | 5 cut(s) | 51, 215, 219, 1241, 1380 |
| BfmI | CTRYAG | 1 cut(s) | 835 |
| BfuI | GTATCC | 1 cut(s) | 1061 |
| BisI | GCNGC | 4 cut(s) | 45, 117, 738, 1172 |
| BlsI | GCNGC | 4 cut(s) | 46, 118, 739, 1173 |
| BmcAI | AGTACT | 1 cut(s) | 1285 |
| Bme1390I | CCNGG | 2 cut(s) | 267, 282 |
| Bme18I | GGWCC | 3 cut(s) | 300, 455, 912 |
| BmgT120I | GGNCC | 3 cut(s) | 300, 455, 912 |
| BmiI | GGNNCC | 1 cut(s) | 1209 |
| BmrFI | CCNGG | 2 cut(s) | 267, 282 |
| BmsI | GCATC | 6 cut(s) | 346, 397, 638, 697, 871, 1135 |
| BpiI | GAAGAC | 2 cut(s) | 424, 1554 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1396, 1428 |
| BpuEI | CTTGAG | 2 cut(s) | 1496, 1574 |
| BsaBI | GATNNNNATC | 2 cut(s) | 689, 996 |
| BsaJI | CCNNGG | 2 cut(s) | 597, 1195 |
| BsaWI | WCCGGW | 1 cut(s) | 194 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1200, 1230 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 74 |
| Bse118I | RCCGGY | 1 cut(s) | 194 |
| Bse1I | ACTGG | 1 cut(s) | 603 |
| Bse3DI | GCAATG | 1 cut(s) | 167 |
| Bse8I | GATNNNNATC | 2 cut(s) | 689, 996 |
| BseBI | CCWGG | 2 cut(s) | 267, 282 |
| BseDI | CCNNGG | 2 cut(s) | 597, 1195 |
| BseGI | GGATG | 4 cut(s) | 712, 886, 1429, 1564 |
| BseJI | GATNNNNATC | 2 cut(s) | 689, 996 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 74 |
| BseMI | GCAATG | 1 cut(s) | 167 |
| BseNI | ACTGG | 1 cut(s) | 603 |
| BseRI | GAGGAG | 2 cut(s) | 999, 1324 |
| BseXI | GCAGC | 4 cut(s) | 56, 103, 749, 1183 |
| BshFI | GGCC | 3 cut(s) | 137, 602, 772 |
| BshNI | GGYRCC | 1 cut(s) | 1207 |
| BshTI | ACCGGT | 1 cut(s) | 194 |
| BsiSI | CCGG | 1 cut(s) | 195 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 74 |
| BsmAI | GTCTC | 3 cut(s) | 25, 873, 1451 |
| BsmI | GAATGC | 2 cut(s) | 26, 46 |
| BsnI | GGCC | 3 cut(s) | 137, 602, 772 |
| Bsp143I | GATC | 3 cut(s) | 747, 1078, 1534 |
| Bsp19I | CCATGG | 1 cut(s) | 1195 |
| BspACI | CCGC | 2 cut(s) | 95, 884 |
| BspANI | GGCC | 3 cut(s) | 137, 602, 772 |
| BspHI | TCATGA | 1 cut(s) | 1537 |
| BspLI | GGNNCC | 1 cut(s) | 1209 |
| BspT107I | GGYRCC | 1 cut(s) | 1207 |
| BsrDI | GCAATG | 1 cut(s) | 167 |
| BsrFI | RCCGGY | 1 cut(s) | 194 |
| BsrI | ACTGG | 1 cut(s) | 603 |
| BssAI | RCCGGY | 1 cut(s) | 194 |
| BssECI | CCNNGG | 2 cut(s) | 597, 1195 |
| BssMI | GATC | 3 cut(s) | 747, 1078, 1534 |
| BssT1I | CCWWGG | 2 cut(s) | 597, 1195 |
| Bst2UI | CCWGG | 2 cut(s) | 267, 282 |
| Bst4CI | ACNGT | 1 cut(s) | 482 |
| Bst6I | CTCTTC | 2 cut(s) | 783, 1449 |
| BstC8I | GCNNGC | 2 cut(s) | 181, 1124 |
| BstDEI | CTNAG | 5 cut(s) | 148, 296, 960, 983, 1055 |
| BstDSI | CCRYGG | 1 cut(s) | 1195 |
| BstF5I | GGATG | 4 cut(s) | 712, 886, 1429, 1564 |
| BstKTI | GATC | 3 cut(s) | 750, 1081, 1537 |
| BstMAI | GTCTC | 3 cut(s) | 25, 873, 1451 |
| BstMBI | GATC | 3 cut(s) | 747, 1078, 1534 |
| BstNI | CCWGG | 2 cut(s) | 267, 282 |
| BstNSI | RCATGY | 2 cut(s) | 187, 1126 |
| BstSCI | CCNGG | 2 cut(s) | 265, 280 |
| BstSFI | CTRYAG | 1 cut(s) | 835 |
| BstV1I | GCAGC | 4 cut(s) | 56, 103, 749, 1183 |
| BstV2I | GAAGAC | 2 cut(s) | 424, 1554 |
| BsuI | GTATCC | 1 cut(s) | 1061 |
| BsuRI | GGCC | 3 cut(s) | 137, 602, 772 |
| BtgI | CCRYGG | 1 cut(s) | 1195 |
| BtsCI | GGATG | 4 cut(s) | 712, 886, 1429, 1564 |
| BtsIMutI | CAGTG | 2 cut(s) | 610, 762 |
| Cac8I | GCNNGC | 2 cut(s) | 181, 1124 |
| CaiI | CAGNNNCTG | 2 cut(s) | 119, 764 |
| CciI | TCATGA | 1 cut(s) | 1537 |
| Cfr10I | RCCGGY | 1 cut(s) | 194 |
| Cfr13I | GGNCC | 3 cut(s) | 300, 455, 912 |
| Csp6I | GTAC | 2 cut(s) | 187, 1284 |
| CspAI | ACCGGT | 1 cut(s) | 194 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 292, 327 |
| CviAII | CATG | 7 cut(s) | 184, 363, 1123, 1182, 1196, 1263, 1538 |
| CviQI | GTAC | 2 cut(s) | 187, 1284 |
| DdeI | CTNAG | 5 cut(s) | 148, 296, 960, 983, 1055 |
| DpnI | GATC | 3 cut(s) | 749, 1080, 1536 |
| DpnII | GATC | 3 cut(s) | 747, 1078, 1534 |
| Eam1104I | CTCTTC | 2 cut(s) | 783, 1449 |
| EarI | CTCTTC | 2 cut(s) | 783, 1449 |
| EciI | GGCGGA | 1 cut(s) | 84 |
| Eco130I | CCWWGG | 2 cut(s) | 597, 1195 |
| Eco147I | AGGCCT | 2 cut(s) | 137, 772 |
| Eco47I | GGWCC | 3 cut(s) | 300, 455, 912 |
| EcoRI | GAATTC | 1 cut(s) | 491 |
| EcoRII | CCWGG | 2 cut(s) | 265, 280 |
| EcoT14I | CCWWGG | 2 cut(s) | 597, 1195 |
| ErhI | CCWWGG | 2 cut(s) | 597, 1195 |
| FaeI | CATG | 7 cut(s) | 187, 366, 1126, 1185, 1199, 1266, 1541 |
| FatI | CATG | 7 cut(s) | 183, 362, 1122, 1181, 1195, 1262, 1537 |
| FbaI | TGATCA | 2 cut(s) | 747, 1534 |
| Fnu4HI | GCNGC | 4 cut(s) | 45, 117, 738, 1172 |
| FokI | GGATG | 4 cut(s) | 719, 893, 1436, 1571 |
| Fsp4HI | GCNGC | 4 cut(s) | 45, 117, 738, 1172 |
| FspBI | CTAG | 5 cut(s) | 51, 215, 219, 1241, 1380 |
| GluI | GCNGC | 4 cut(s) | 45, 117, 738, 1172 |
| HaeIII | GGCC | 3 cut(s) | 137, 602, 772 |
| HapII | CCGG | 1 cut(s) | 195 |
| Hin1II | CATG | 7 cut(s) | 187, 366, 1126, 1185, 1199, 1266, 1541 |
| HincII | GTYRAC | 2 cut(s) | 1093, 1247 |
| HindII | GTYRAC | 2 cut(s) | 1093, 1247 |
| HinfI | GANTC | 5 cut(s) | 382, 530, 866, 955, 1445 |
| HpaI | GTTAAC | 1 cut(s) | 1093 |
| HpaII | CCGG | 1 cut(s) | 195 |
| HphI | GGTGA | 1 cut(s) | 25 |
| Hpy166II | GTNNAC | 2 cut(s) | 1093, 1247 |
| Hpy188I | TCNGA | 4 cut(s) | 237, 406, 459, 976 |
| Hpy188III | TCNNGA | 6 cut(s) | 75, 355, 610, 751, 863, 1538 |
| Hpy8I | GTNNAC | 2 cut(s) | 1093, 1247 |
| HpyAV | CCTTC | 7 cut(s) | 148, 272, 727, 783, 1077, 1147, 1464 |
| HpyCH4III | ACNGT | 1 cut(s) | 482 |
| HpyCH4IV | ACGT | 1 cut(s) | 635 |
| HpyF3I | CTNAG | 5 cut(s) | 148, 296, 960, 983, 1055 |
| HpySE526I | ACGT | 1 cut(s) | 635 |
| Hsp92II | CATG | 7 cut(s) | 187, 366, 1126, 1185, 1199, 1266, 1541 |
| Ksp22I | TGATCA | 2 cut(s) | 747, 1534 |
| KspAI | GTTAAC | 1 cut(s) | 1093 |
| Kzo9I | GATC | 3 cut(s) | 747, 1078, 1534 |
| LmnI | GCTCC | 5 cut(s) | 52, 157, 589, 1012, 1199 |
| Lsp1109I | GCAGC | 4 cut(s) | 56, 103, 749, 1183 |
| LweI | GCATC | 6 cut(s) | 346, 397, 638, 697, 871, 1135 |
| MaeI | CTAG | 5 cut(s) | 51, 215, 219, 1241, 1380 |
| MaeII | ACGT | 1 cut(s) | 635 |
| MaeIII | GTNAC | 1 cut(s) | 1394 |
| MalI | GATC | 3 cut(s) | 749, 1080, 1536 |
| MboI | GATC | 3 cut(s) | 747, 1078, 1534 |
| MfeI | CAATTG | 1 cut(s) | 934 |
| MluCI | AATT | 8 cut(s) | 491, 934, 1045, 1100, 1108, 1276, 1291, 1508 |
| MlyI | GAGTC | 2 cut(s) | 391, 875 |
| MmeI | TCCRAC | 1 cut(s) | 1447 |
| MseI | TTAA | 5 cut(s) | 429, 537, 638, 1092, 1527 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1542 |
| MspA1I | CMGCKG | 1 cut(s) | 116 |
| MspI | CCGG | 1 cut(s) | 195 |
| MspR9I | CCNGG | 2 cut(s) | 267, 282 |
| MunI | CAATTG | 1 cut(s) | 934 |
| Mva1269I | GAATGC | 2 cut(s) | 26, 46 |
| MvaI | CCWGG | 2 cut(s) | 267, 282 |
| NcoI | CCATGG | 1 cut(s) | 1195 |
| NdeII | GATC | 3 cut(s) | 747, 1078, 1534 |
| NlaIII | CATG | 7 cut(s) | 187, 366, 1126, 1185, 1199, 1266, 1541 |
| NlaIV | GGNNCC | 1 cut(s) | 1209 |
| NspI | RCATGY | 2 cut(s) | 187, 1126 |
| PaeI | GCATGC | 1 cut(s) | 1126 |
| PagI | TCATGA | 1 cut(s) | 1537 |
| PceI | AGGCCT | 2 cut(s) | 137, 772 |
| PctI | GAATGC | 2 cut(s) | 26, 46 |
| PfeI | GAWTC | 3 cut(s) | 530, 955, 1445 |
| PinAI | ACCGGT | 1 cut(s) | 194 |
| PkrI | GCNGC | 4 cut(s) | 46, 118, 739, 1173 |
| PleI | GAGTC | 2 cut(s) | 390, 874 |
| PpsI | GAGTC | 2 cut(s) | 390, 874 |
| PshBI | ATTAAT | 1 cut(s) | 429 |
| Psp6I | CCWGG | 2 cut(s) | 265, 280 |
| PspGI | CCWGG | 2 cut(s) | 265, 280 |
| PspN4I | GGNNCC | 1 cut(s) | 1209 |
| PspPI | GGNCC | 3 cut(s) | 300, 455, 912 |
| PstNI | CAGNNNCTG | 2 cut(s) | 119, 764 |
| PvuII | CAGCTG | 1 cut(s) | 116 |
| RsaI | GTAC | 2 cut(s) | 188, 1285 |
| RsaNI | GTAC | 2 cut(s) | 187, 1284 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1542 |
| SaqAI | TTAA | 5 cut(s) | 429, 537, 638, 1092, 1527 |
| SatI | GCNGC | 4 cut(s) | 45, 117, 738, 1172 |
| Sau3AI | GATC | 3 cut(s) | 747, 1078, 1534 |
| Sau96I | GGNCC | 3 cut(s) | 300, 455, 912 |
| ScaI | AGTACT | 1 cut(s) | 1285 |
| SchI | GAGTC | 2 cut(s) | 391, 875 |
| ScrFI | CCNGG | 2 cut(s) | 267, 282 |
| SfaNI | GCATC | 6 cut(s) | 346, 397, 638, 697, 871, 1135 |
| SfcI | CTRYAG | 1 cut(s) | 835 |
| SgrAI | CRCCGGYG | 1 cut(s) | 194 |
| SinI | GGWCC | 3 cut(s) | 300, 455, 912 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1542 |
| SmlI | CTYRAG | 2 cut(s) | 1475, 1553 |
| SmoI | CTYRAG | 2 cut(s) | 1475, 1553 |
| SphI | GCATGC | 1 cut(s) | 1126 |
| Sse9I | AATT | 8 cut(s) | 491, 934, 1045, 1100, 1108, 1276, 1291, 1508 |
| SseBI | AGGCCT | 2 cut(s) | 137, 772 |
| SsiI | CCGC | 2 cut(s) | 95, 884 |
| SspI | AATATT | 1 cut(s) | 331 |
| SspMI | CTAG | 5 cut(s) | 51, 215, 219, 1241, 1380 |
| StuI | AGGCCT | 2 cut(s) | 137, 772 |
| StyD4I | CCNGG | 2 cut(s) | 265, 280 |
| StyI | CCWWGG | 2 cut(s) | 597, 1195 |
| TaaI | ACNGT | 1 cut(s) | 482 |
| TaiI | ACGT | 1 cut(s) | 638 |
| TaqI | TCGA | 1 cut(s) | 1081 |
| TasI | AATT | 8 cut(s) | 491, 934, 1045, 1100, 1108, 1276, 1291, 1508 |
| TatI | WGTACW | 2 cut(s) | 186, 1283 |
| TfiI | GAWTC | 3 cut(s) | 530, 955, 1445 |
| Tru1I | TTAA | 5 cut(s) | 429, 537, 638, 1092, 1527 |
| Tru9I | TTAA | 5 cut(s) | 429, 537, 638, 1092, 1527 |
| TscAI | CASTG | 2 cut(s) | 610, 769 |
| TseI | GCWGC | 4 cut(s) | 44, 116, 737, 1171 |
| TspRI | CASTG | 2 cut(s) | 610, 769 |
| VpaK11BI | GGWCC | 3 cut(s) | 300, 455, 912 |
| VspI | ATTAAT | 1 cut(s) | 429 |
| XapI | RAATTY | 2 cut(s) | 491, 1100 |
| XceI | RCATGY | 2 cut(s) | 187, 1126 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 541 |
| XspI | CTAG | 5 cut(s) | 51, 215, 219, 1241, 1380 |
| ZrmI | AGTACT | 1 cut(s) | 1285 |