Rw6G016200

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0000421
Physical Location & Seq
Forward (+)
31635617 .. 31638023
2407 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G016200.1

Sequence Viewer

Length: 1611 bp
ATGCCTATAGAGTTGATGTTAAGCGTGGGGGAGTGGGATGGCAAGAGGATTAGAATATATAGATCAATCCCGAAGGAGAAGAAAAGAGAGCTTGAAGCGTTGGTAGAAGCTTATGAGGTCGGTAAAAAGAACTCACAGCCTAGATTAGTTCCTCTCCCTTCATTTGGGCTAGATTTAATGGATGAAGTAGTGGAGATTCCAAAGAAGAGGAAGGGAGTAAGTGCACCGCTTGAAAAAGCCAAGAATTTTCATACTGGTGGTTTGTCATTCAACTTTGCCAAGAATCCACACTATATTCGTTCTTCTAATCAGACTGCTTCTTGTCTAATTCCTGGTTATCGGCCACTTGGTTATAATGCTTTGAGAATCACTCTTCTACACAAGGAAATGATGCACATTGAGAAGATGTTGGAACCGATTAAGCCCTCATGGCAACAAAATGGTATTAGTGAGTGTACTGATGGGTGGTCTGATTCTCAAAGAAGGCCACTTATCAATGTTATGGAAGCTTATGAATTTAGATCTATGTTTTTTAGAACACTGAACTGTGAAGGGGATTCCAAAGACATGTTCTTCAATTCCGACTTGCTCATTGAGAGTATTTTGGAGATCGGTTCACAACATGTTGTCCAGGTAATCACTGATAATGTTAGCAATTGCAAAGCTGTTGGAGCTATTATTAATGCTGGATTTCCACACATATTTTGGACTGCATGTGTTATGCATACGTTTAACCTTGCTTTGAAGAACATATGTATACCAAGTTCAATTACTTCTAATAAGGATGTGTGGTTCATAAAGAATTTTATTGTGAACCATAATATGAGGTTGACTATGTTTAATGAGCATTCCCACTTGAAGATGTTATCTATTGTCGACACACACTTTGGTTCCATTGTGGTGATGATTAAGAGATTTAGGAAGATCAAGCAAACTCTAGAACGGATGGTGATAAGTGATCAATGGGATGCTTATAGAGGTGATGATGTGGTAAAAGCAAGGGTCGTGAAAGACATGATATTAGATGATGATGTTTGGGGAAAGATTAATTACATGCTTGCTTTCACATTACCCATCTATGAGATGCTTAGAATGAGTGATACGGATGAGCCATGTCTTCACAAGTGGGACACTATGATTGAGCAAGTAAAGGTCGCTATCTATAAACAAGAGGGTAAGGAACAGGAAGAGCCCTCGGAATCTCCTAATTGTCTTCCTCCACATCAAGATAGTCAGATTTCTAAGGAAAGAAAAGAATGTCTTAAAAAAAATACTATGCTAATGAAGAGGAAAGATGAATGGGTTGTCAATGGATCTAGTACACCAAATCTCCAAAGAAATTTGAGCACCTATAAGTTTATACTTTATTTGAGGAGGAATAAGATTACACCACAAAGTGTCGAAGATTTGATATTTGTGCATAATAATCTTCTTCAGCTTTTATCAAGGAGAATTCCACAATACAAAAGTGGAGAAATGTGGGATATTAGTGGGGATGATTATGATTCGATGGATACTGTTAATGGAGGCATTCTTGAGGTTGCCAACCTCTTTCTTGATGAGCCGGTCTTGGAGGGTGTAATCTTTGATGATGAGAATGAAGCTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT

Protein Analysis

536

Amino Acids

61.93

Weight (kDa)

6.2

Isoelectric Point (pI)

50.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF659 PF04937 119 - 252 2.2e-33 Domain of unknown function (DUF659)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000421)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G08267
fragaria_vesca FvH4_2g14331 FvH4_2g16371 FvH4_2g26163 FvH4_3g42540 FvH4_4g02102 FvH4_4g12491 FvH4_4g35171 FvH4_5g06632 FvH4_5g06632 FvH4_5g06632 FvH4_5g08811 FvH4_5g08812 FvH4_5g23531 FvH4_6g10272 FvH4_6g40844 FvH4_7g16803 FvH4_7g16804
malus_domestica MD11G1099500.v1.1 MD17G1176800.v1.1
pyrus_communis pycom05g07840 pycom06g08730 pycom07g12010 pycom07g12020 pycom10g07270 pycom11g17470 pycom12g10610 pycom12g14240 pycom13g22040 pycom15g02440
rosa_chinensis RchiOBHm_Chr1g0371321 RchiOBHm_Chr2g0102701 RchiOBHm_Chr3g0465681 RchiOBHm_Chr4g0420941 RchiOBHm_Chr4g0434271 RchiOBHm_Chr4g0442721 RchiOBHm_Chr6g0262081 RchiOBHm_Chr6g0278171 RchiOBHm_Chr6g0294991 RchiOBHm_Chr6g0295001 RchiOBHm_Chr7g0205361 RchiOBHm_Chr7g0205371 RchiOBHm_Chr7g0223471
rosa_laevigata RLG00000005266
rosa_multiflora Rmu_sc0000493.1_g000033 Rmu_sc0000493.1_g000034 Rmu_sc0000507.1_g000007 Rmu_sc0000843.1_g000001 Rmu_sc0001075.1_g000033 Rmu_sc0002077.1_g000007 Rmu_sc0002077.1_g000008 Rmu_sc0002329.1_g000029 Rmu_sc0002539.1_g000077 Rmu_sc0002655.1_g000006 Rmu_sc0003127.1_g000020 Rmu_sc0003765.1_g000054 Rmu_sc0004368.1_g000023 Rmu_sc0004753.1_g000022 Rmu_sc0005297.1_g000014 Rmu_sc0007633.1_g000010 Rmu_sc0008164.1_g000005 Rmu_sc0008191.1_g000003 Rmu_sc0017900.1_g000005 Rmu_sc0022727.1_g000002
rosa_roxburghii Rroxscaffold_2G00079920 Rroxscaffold_3G00255890 Rroxscaffold_4G00295340 Rroxscaffold_4G00296360 Rroxscaffold_4G00299640 Rroxscaffold_6G00388210
rosa_rugosa Rorug02G0466700 Rorug04G0123200 Rorug05G0074800 Rorug07G0202900
rosa_samantha Rh1DG134700 Rh3CG159000 Rh4AG331000 Rh5AG521100 Rh5BG136400 Rh5DG127300 Rh5DG383100 Rh5DG386100 Rh5DG458000 Rh6CG450400 Rh7CG233800 Rh7DG407100
rosa_wichuraiana Rw1G004960 Rw1G005730 Rw1G006360 Rw1G017400 Rw2G013190 Rw2G022210 Rw2G029640 Rw5G020910 Rw5G036930 Rw6G016200 Rw7G018170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 354
AccI GTMKAC 2 cut(s) 757, 876
AciI CCGC 1 cut(s) 227
AclWI GGATC 1 cut(s) 1321
AcoI YGGCCR 1 cut(s) 341
AcsI RAATTY 5 cut(s) 244, 515, 802, 1339, 1452
AcuI CTGAAG 1 cut(s) 1418
AdeI CACNNNGTG 1 cut(s) 1397
AfaI GTAC 2 cut(s) 457, 1321
AfiI CCNNNNNNNGG 1 cut(s) 164
AflIII ACRYGT 2 cut(s) 567, 622
AgsI TTSAA 7 cut(s) 95, 233, 271, 577, 745, 768, 859
AjnI CCWGG 2 cut(s) 331, 630
AjuI GAANNNNNNNTTGG 2 cut(s) 554, 586
AloI GAACNNNNNNTCC 2 cut(s) 776, 808
AluBI AGCT 7 cut(s) 91, 110, 509, 665, 674, 1438, 1604
AluI AGCT 7 cut(s) 91, 110, 509, 665, 674, 1438, 1604
Alw21I GWGCWC 2 cut(s) 226, 1349
Alw44I GTGCAC 1 cut(s) 222
AlwI GGATC 1 cut(s) 1321
AoxI GGCC 2 cut(s) 341, 485
ApaLI GTGCAC 1 cut(s) 222
ApoI RAATTY 5 cut(s) 244, 515, 802, 1339, 1452
ArsI GACNNNNNNTTYG 2 cut(s) 869, 901
AseI ATTAAT 2 cut(s) 681, 1047
AsuHPI GGTGA 3 cut(s) 913, 961, 992
BaeGI GKGCMC 1 cut(s) 226
BanII GRGCYC 1 cut(s) 1194
BbsI GAAGAC 2 cut(s) 1109, 1205
Bbv12I GWGCWC 2 cut(s) 226, 1349
BccI CCATC 5 cut(s) 32, 455, 940, 1082, 1504
BciT130I CCWGG 2 cut(s) 333, 632
BciVI GTATCC 1 cut(s) 1507
BclI TGATCA 1 cut(s) 958
BfaI CTAG 4 cut(s) 141, 170, 938, 1317
BfmI CTRYAG 1 cut(s) 6
BfuI GTATCC 1 cut(s) 1507
BglI GCCNNNNNGGC 1 cut(s) 430
BglII AGATCT 1 cut(s) 521
Bme1390I CCNGG 2 cut(s) 333, 632
BmiI GGNNCC 2 cut(s) 414, 892
BmrFI CCNGG 2 cut(s) 333, 632
BmsI GCATC 3 cut(s) 381, 958, 1074
BpiI GAAGAC 2 cut(s) 1109, 1205
BplI GAGNNNNNCTC 2 cut(s) 355, 387
BpuEI CTTGAG 1 cut(s) 1556
BsaJI CCNNGG 1 cut(s) 1194
BsaXI ACNNNNNCTCC 2 cut(s) 1314, 1344
Bsc4I CCNNNNNNNGG 1 cut(s) 164
Bse118I RCCGGY 1 cut(s) 1564
Bse1I ACTGG 1 cut(s) 259
BseBI CCWGG 2 cut(s) 333, 632
BseDI CCNNGG 1 cut(s) 1194
BseGI GGATG 7 cut(s) 43, 187, 790, 951, 973, 1111, 1501
BseLI CCNNNNNNNGG 1 cut(s) 164
BseNI ACTGG 1 cut(s) 259
BseRI GAGGAG 1 cut(s) 1387
BseSI GKGCMC 1 cut(s) 226
BshFI GGCC 2 cut(s) 343, 487
BsiHKAI GWGCWC 2 cut(s) 226, 1349
BsiSI CCGG 1 cut(s) 1565
BslFI GGGAC 1 cut(s) 1142
BslI CCNNNNNNNGG 1 cut(s) 164
BsmFI GGGAC 1 cut(s) 1142
BsmI GAATGC 2 cut(s) 847, 1530
BsnI GGCC 2 cut(s) 343, 487
Bsp1286I GDGCHC 3 cut(s) 226, 1194, 1349
Bsp143I GATC 6 cut(s) 62, 521, 609, 924, 958, 1313
BspACI CCGC 1 cut(s) 227
BspANI GGCC 2 cut(s) 343, 487
BspLI GGNNCC 2 cut(s) 414, 892
BspPI GGATC 1 cut(s) 1321
BspQI GCTCTTC 1 cut(s) 1182
BsrFI RCCGGY 1 cut(s) 1564
BsrI ACTGG 1 cut(s) 259
BssAI RCCGGY 1 cut(s) 1564
BssECI CCNNGG 1 cut(s) 1194
BssMI GATC 6 cut(s) 62, 521, 609, 924, 958, 1313
BssNAI GTATAC 1 cut(s) 758
Bst1107I GTATAC 1 cut(s) 758
Bst2UI CCWGG 2 cut(s) 333, 632
Bst4CI ACNGT 2 cut(s) 548, 1519
Bst6I CTCTTC 4 cut(s) 200, 378, 1182, 1280
BstC8I GCNNGC 1 cut(s) 1059
BstDEI CTNAG 2 cut(s) 1088, 1242
BstF5I GGATG 7 cut(s) 43, 187, 790, 951, 973, 1111, 1501
BstKTI GATC 6 cut(s) 65, 524, 612, 927, 961, 1316
BstMBI GATC 6 cut(s) 62, 521, 609, 924, 958, 1313
BstMWI GCNNNNNNNGC 2 cut(s) 430, 671
BstNI CCWGG 2 cut(s) 333, 632
BstNSI RCATGY 4 cut(s) 571, 626, 717, 1057
BstSCI CCNGG 2 cut(s) 331, 630
BstSFI CTRYAG 1 cut(s) 6
BstSLI GKGCMC 1 cut(s) 226
BstV2I GAAGAC 2 cut(s) 1109, 1205
BstX2I RGATCY 2 cut(s) 521, 1313
BstYI RGATCY 2 cut(s) 521, 1313
BstZ17I GTATAC 1 cut(s) 758
BsuI GTATCC 1 cut(s) 1507
BsuRI GGCC 2 cut(s) 343, 487
BtsCI GGATG 7 cut(s) 43, 187, 790, 951, 973, 1111, 1501
BtsIMutI CAGTG 2 cut(s) 539, 639
Cac8I GCNNGC 1 cut(s) 1059
Cfr10I RCCGGY 1 cut(s) 1564
Csp6I GTAC 2 cut(s) 456, 1320
CviAII CATG 7 cut(s) 429, 568, 623, 714, 1015, 1054, 1113
CviQI GTAC 2 cut(s) 456, 1320
DdeI CTNAG 2 cut(s) 1088, 1242
DpnI GATC 6 cut(s) 64, 523, 611, 926, 960, 1315
DpnII GATC 6 cut(s) 62, 521, 609, 924, 958, 1313
DraIII CACNNNGTG 1 cut(s) 1397
EaeI YGGCCR 1 cut(s) 341
Eam1104I CTCTTC 4 cut(s) 200, 378, 1182, 1280
EarI CTCTTC 4 cut(s) 200, 378, 1182, 1280
Eco24I GRGCYC 1 cut(s) 1194
Eco57I CTGAAG 1 cut(s) 1418
EcoRI GAATTC 1 cut(s) 1452
EcoRII CCWGG 2 cut(s) 331, 630
EcoT22I ATGCAT 1 cut(s) 726
EcoT38I GRGCYC 1 cut(s) 1194
FaeI CATG 7 cut(s) 432, 571, 626, 717, 1018, 1057, 1116
FalI AAGNNNNNCTT 2 cut(s) 1245, 1277
FaqI GGGAC 1 cut(s) 1142
FatI CATG 7 cut(s) 428, 567, 622, 713, 1014, 1053, 1112
FauNDI CATATG 1 cut(s) 752
FbaI TGATCA 1 cut(s) 958
FblI GTMKAC 2 cut(s) 757, 876
FokI GGATG 7 cut(s) 50, 194, 797, 958, 980, 1118, 1508
FriOI GRGCYC 1 cut(s) 1194
FspBI CTAG 4 cut(s) 141, 170, 938, 1317
HaeIII GGCC 2 cut(s) 343, 487
HapII CCGG 1 cut(s) 1565
Hin1II CATG 7 cut(s) 432, 571, 626, 717, 1018, 1057, 1116
HincII GTYRAC 2 cut(s) 831, 877
HindII GTYRAC 2 cut(s) 831, 877
HindIII AAGCTT 2 cut(s) 108, 507
HinfI GANTC 7 cut(s) 196, 283, 366, 473, 557, 1199, 1505
HpaII CCGG 1 cut(s) 1565
HphI GGTGA 3 cut(s) 913, 961, 992
Hpy166II GTNNAC 8 cut(s) 224, 456, 617, 758, 814, 831, 877, 1322
Hpy188I TCNGA 5 cut(s) 312, 472, 583, 1198, 1236
Hpy188III TCNNGA 6 cut(s) 70, 938, 1006, 1226, 1535, 1556
Hpy8I GTNNAC 8 cut(s) 224, 456, 617, 758, 814, 831, 877, 1322
HpyAV CCTTC 5 cut(s) 67, 168, 205, 477, 545
HpyCH4III ACNGT 2 cut(s) 548, 1519
HpyCH4IV ACGT 1 cut(s) 728
HpyCH4V TGCA 6 cut(s) 224, 394, 660, 713, 724, 1420
HpyF10VI GCNNNNNNNGC 2 cut(s) 430, 671
HpyF3I CTNAG 2 cut(s) 1088, 1242
HpySE526I ACGT 1 cut(s) 728
Hsp92II CATG 7 cut(s) 432, 571, 626, 717, 1018, 1057, 1116
Ksp22I TGATCA 1 cut(s) 958
Kzo9I GATC 6 cut(s) 62, 521, 609, 924, 958, 1313
LguI GCTCTTC 1 cut(s) 1182
LmnI GCTCC 1 cut(s) 671
LpnPI CCDG 8 cut(s) 240, 318, 345, 617, 644, 672, 1169, 1578
LweI GCATC 3 cut(s) 381, 958, 1074
MaeI CTAG 4 cut(s) 141, 170, 938, 1317
MaeII ACGT 1 cut(s) 728
MalI GATC 6 cut(s) 64, 523, 611, 926, 960, 1315
MboI GATC 6 cut(s) 62, 521, 609, 924, 958, 1313
MfeI CAATTG 1 cut(s) 655
MflI RGATCY 2 cut(s) 521, 1313
MhlI GDGCHC 3 cut(s) 226, 1194, 1349
MmeI TCCRAC 3 cut(s) 390, 606, 649
Mph1103I ATGCAT 1 cut(s) 726
MslI CAYNNNNRTG 2 cut(s) 255, 899
MspI CCGG 1 cut(s) 1565
MspR9I CCNGG 2 cut(s) 333, 632
MunI CAATTG 1 cut(s) 655
Mva1269I GAATGC 2 cut(s) 847, 1530
MvaI CCWGG 2 cut(s) 333, 632
MwoI GCNNNNNNNGC 2 cut(s) 430, 671
NdeI CATATG 1 cut(s) 752
NdeII GATC 6 cut(s) 62, 521, 609, 924, 958, 1313
NlaIII CATG 7 cut(s) 432, 571, 626, 717, 1018, 1057, 1116
NlaIV GGNNCC 2 cut(s) 414, 892
NsiI ATGCAT 1 cut(s) 726
NspI RCATGY 4 cut(s) 571, 626, 717, 1057
PciI ACATGT 2 cut(s) 567, 622
PciSI GCTCTTC 1 cut(s) 1182
PctI GAATGC 2 cut(s) 847, 1530
PfeI GAWTC 7 cut(s) 196, 283, 366, 473, 557, 1199, 1505
PscI ACATGT 2 cut(s) 567, 622
PshBI ATTAAT 2 cut(s) 681, 1047
PsiI TTATAA 1 cut(s) 354
Psp6I CCWGG 2 cut(s) 331, 630
PspGI CCWGG 2 cut(s) 331, 630
PspN4I GGNNCC 2 cut(s) 414, 892
PsrI GAACNNNNNNTAC 2 cut(s) 748, 780
PsuI RGATCY 2 cut(s) 521, 1313
RsaI GTAC 2 cut(s) 457, 1321
RsaNI GTAC 2 cut(s) 456, 1320
RseI CAYNNNNRTG 2 cut(s) 255, 899
SalI GTCGAC 1 cut(s) 875
SapI GCTCTTC 1 cut(s) 1182
Sau3AI GATC 6 cut(s) 62, 521, 609, 924, 958, 1313
ScrFI CCNGG 2 cut(s) 333, 632
SduI GDGCHC 3 cut(s) 226, 1194, 1349
SfaNI GCATC 3 cut(s) 381, 958, 1074
SfcI CTRYAG 1 cut(s) 6
SmiMI CAYNNNNRTG 2 cut(s) 255, 899
SmlI CTYRAG 1 cut(s) 1535
SmoI CTYRAG 1 cut(s) 1535
SsiI CCGC 1 cut(s) 227
SspMI CTAG 4 cut(s) 141, 170, 938, 1317
StyD4I CCNGG 2 cut(s) 331, 630
TaaI ACNGT 2 cut(s) 548, 1519
TaiI ACGT 1 cut(s) 731
TaqI TCGA 3 cut(s) 876, 1401, 1508
TatI WGTACW 2 cut(s) 455, 1319
TfiI GAWTC 7 cut(s) 196, 283, 366, 473, 557, 1199, 1505
TscAI CASTG 2 cut(s) 546, 646
TspDTI ATGAA 7 cut(s) 150, 198, 239, 528, 784, 1298, 1311
TspGWI ACGGA 2 cut(s) 958, 1118
TspRI CASTG 2 cut(s) 546, 646
VneI GTGCAC 1 cut(s) 222
VspI ATTAAT 2 cut(s) 681, 1047
XapI RAATTY 5 cut(s) 244, 515, 802, 1339, 1452
XbaI TCTAGA 1 cut(s) 937
XceI RCATGY 4 cut(s) 571, 626, 717, 1057
XcmI CCANNNNNNNNNTGG 1 cut(s) 702
XmiI GTMKAC 2 cut(s) 757, 876
XspI CTAG 4 cut(s) 141, 170, 938, 1317
Zsp2I ATGCAT 1 cut(s) 726
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.