pycom07g12010

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0000421
Physical Location & Seq
Forward (+)
13332818 .. 13334631
1814 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g12010.1

Sequence Viewer

Length: 882 bp
ATGTTTACCTATTTTTCTTCACTCGAACCTCAGAAATTAGACTTGTCGTCTGCAATTGCTCCGTCGTCTCCGTCCAACTGCTTCATCGTCTCTGTCAAACTGCTTTGTCGTCTCCATAGTCTCCGTCTGCAACTGAAAATGAATCACCCTGATAATCATGTGAATGATAATGCTAATCTGGATGAGATTGTTGAAAATTATAATGTTCCGCTGTGGAAGTATGTCAAAAAGCTTGAAAAAGTGGGAAATATAGGAGGAGGAAATACTAAATTTGAGTGCAATTATTGTCAAAAAACTTATAAAGGATCCTACTCTAGGATCAAGTTTCATTTGTTAAAAATGTCTGGAAATGGGATCGCACCTTGCAACAAGGTTATTGATGAAACTCTTGCGGAAATGAATAAGTTAGTTCGAGAGTGTGAATACAAGTTGAAGAGTTCTGCTCCTAAACATGTTTCGTTGCCCAATACTGGTTCATTCTGTTATGATCTACCTGAAGAAAATCTTGATCCAAAGAAGAGAAAAGGAACAAGTGGGCCTCTCAGTAAAGCTTTTAACAAGGAGGCTCGAGATCAATGTGATGCCGAAGTTGCAAGGATGTTTTATACAGGTGGCTTATCATTTAACCTTGCAAGAAATCCGCACTATCGGAACTCATATGTTCGTGCTTCTACACTTCCAGGGTATGTTCCACCAGGTTACAACGCACTGAGAACTACTCTTCTGCAACAAGAAAAGAGTCACATTGAGCGGTGCCTCCAACCAATCAAGCGCACATGGAGCACTAAAGGTGTAAGTGTTTGCAGTGATGGGTGGACAGATGCTCAAAGGAGACCACTTATTAAAATTATGGCAATTGTGAAAGTGGGCCAATGTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT

Protein Analysis

294

Amino Acids

33.05

Weight (kDa)

9.35

Isoelectric Point (pI)

45.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF659 PF04937 232 - 290 9.7e-12 Domain of unknown function (DUF659)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000421)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G08267
fragaria_vesca FvH4_2g14331 FvH4_2g16371 FvH4_2g26163 FvH4_3g42540 FvH4_4g02102 FvH4_4g12491 FvH4_4g35171 FvH4_5g06632 FvH4_5g06632 FvH4_5g06632 FvH4_5g08811 FvH4_5g08812 FvH4_5g23531 FvH4_6g10272 FvH4_6g40844 FvH4_7g16803 FvH4_7g16804
malus_domestica MD11G1099500.v1.1 MD17G1176800.v1.1
pyrus_communis pycom05g07840 pycom06g08730 pycom07g12010 pycom07g12020 pycom10g07270 pycom11g17470 pycom12g10610 pycom12g14240 pycom13g22040 pycom15g02440
rosa_chinensis RchiOBHm_Chr1g0371321 RchiOBHm_Chr2g0102701 RchiOBHm_Chr3g0465681 RchiOBHm_Chr4g0420941 RchiOBHm_Chr4g0434271 RchiOBHm_Chr4g0442721 RchiOBHm_Chr6g0262081 RchiOBHm_Chr6g0278171 RchiOBHm_Chr6g0294991 RchiOBHm_Chr6g0295001 RchiOBHm_Chr7g0205361 RchiOBHm_Chr7g0205371 RchiOBHm_Chr7g0223471
rosa_laevigata RLG00000005266
rosa_multiflora Rmu_sc0000493.1_g000033 Rmu_sc0000493.1_g000034 Rmu_sc0000507.1_g000007 Rmu_sc0000843.1_g000001 Rmu_sc0001075.1_g000033 Rmu_sc0002077.1_g000007 Rmu_sc0002077.1_g000008 Rmu_sc0002329.1_g000029 Rmu_sc0002539.1_g000077 Rmu_sc0002655.1_g000006 Rmu_sc0003127.1_g000020 Rmu_sc0003765.1_g000054 Rmu_sc0004368.1_g000023 Rmu_sc0004753.1_g000022 Rmu_sc0005297.1_g000014 Rmu_sc0007633.1_g000010 Rmu_sc0008164.1_g000005 Rmu_sc0008191.1_g000003 Rmu_sc0017900.1_g000005 Rmu_sc0022727.1_g000002
rosa_roxburghii Rroxscaffold_2G00079920 Rroxscaffold_3G00255890 Rroxscaffold_4G00295340 Rroxscaffold_4G00296360 Rroxscaffold_4G00299640 Rroxscaffold_6G00388210
rosa_rugosa Rorug02G0466700 Rorug04G0123200 Rorug05G0074800 Rorug07G0202900
rosa_samantha Rh1DG134700 Rh3CG159000 Rh4AG331000 Rh5AG521100 Rh5BG136400 Rh5DG127300 Rh5DG383100 Rh5DG386100 Rh5DG458000 Rh6CG450400 Rh7CG233800 Rh7DG407100
rosa_wichuraiana Rw1G004960 Rw1G005730 Rw1G006360 Rw1G017400 Rw2G013190 Rw2G022210 Rw2G029640 Rw5G020910 Rw5G036930 Rw6G016200 Rw7G018170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 201, 300
AccB1I GGYRCC 1 cut(s) 753
AccBSI CCGCTC 1 cut(s) 751
AciI CCGC 4 cut(s) 209, 392, 641, 751
AclWI GGATC 5 cut(s) 300, 313, 326, 362, 503
AcsI RAATTY 1 cut(s) 269
AcuI CTGAAG 1 cut(s) 516
AfiI CCNNNNNNNGG 2 cut(s) 315, 470
AflIII ACRYGT 1 cut(s) 451
AgsI TTSAA 3 cut(s) 194, 236, 433
AhdI GACNNNNNGTC 1 cut(s) 46
AjnI CCWGG 2 cut(s) 679, 694
AluBI AGCT 2 cut(s) 232, 551
AluI AGCT 2 cut(s) 232, 551
Alw21I GWGCWC 1 cut(s) 785
Alw26I GTCTC 5 cut(s) 72, 94, 116, 125, 826
AlwI GGATC 5 cut(s) 300, 313, 326, 362, 503
Ama87I CYCGRG 1 cut(s) 567
AoxI GGCC 2 cut(s) 536, 868
ApoI RAATTY 1 cut(s) 269
AspLEI GCGC 1 cut(s) 774
AspS9I GGNCC 2 cut(s) 536, 868
AsuHPI GGTGA 1 cut(s) 137
AvaI CYCGRG 1 cut(s) 567
BamHI GGATCC 1 cut(s) 305
BanI GGYRCC 1 cut(s) 753
Bbv12I GWGCWC 1 cut(s) 785
BccI CCATC 1 cut(s) 803
BciT130I CCWGG 2 cut(s) 681, 696
BcoDI GTCTC 5 cut(s) 72, 94, 116, 125, 826
BfaI CTAG 1 cut(s) 315
Bme1390I CCNGG 2 cut(s) 681, 696
BmeRI GACNNNNNGTC 1 cut(s) 46
BmeT110I CYCGRG 1 cut(s) 567
BmgT120I GGNCC 2 cut(s) 536, 868
BmiI GGNNCC 2 cut(s) 307, 755
BmrFI CCNGG 2 cut(s) 681, 696
BmsI GCATC 2 cut(s) 571, 811
BplI GAGNNNNNCTC 4 cut(s) 427, 459, 703, 735
BsaI GGTCTC 1 cut(s) 826
BsaJI CCNNGG 1 cut(s) 680
Bsc4I CCNNNNNNNGG 2 cut(s) 315, 470
Bse1I ACTGG 1 cut(s) 475
BseBI CCWGG 2 cut(s) 681, 696
BseDI CCNNGG 1 cut(s) 680
BseGI GGATG 2 cut(s) 187, 603
BseLI CCNNNNNNNGG 2 cut(s) 315, 470
BseMII CTCAG 3 cut(s) 44, 556, 701
BseNI ACTGG 1 cut(s) 475
BseRI GAGGAG 1 cut(s) 270
BshFI GGCC 2 cut(s) 538, 870
BshNI GGYRCC 1 cut(s) 753
BsiHKAI GWGCWC 1 cut(s) 785
BsiHKCI CYCGRG 1 cut(s) 567
BslI CCNNNNNNNGG 2 cut(s) 315, 470
BsmAI GTCTC 5 cut(s) 72, 94, 116, 125, 826
BsmBI CGTCTC 3 cut(s) 72, 94, 116
BsnI GGCC 2 cut(s) 538, 870
Bso31I GGTCTC 1 cut(s) 826
BsoBI CYCGRG 1 cut(s) 567
Bsp1286I GDGCHC 1 cut(s) 785
Bsp143I GATC 6 cut(s) 305, 318, 354, 487, 508, 571
BspACI CCGC 4 cut(s) 209, 392, 641, 751
BspANI GGCC 2 cut(s) 538, 870
BspCNI CTCAG 3 cut(s) 43, 555, 702
BspLI GGNNCC 2 cut(s) 307, 755
BspPI GGATC 5 cut(s) 300, 313, 326, 362, 503
BspT107I GGYRCC 1 cut(s) 753
BspTNI GGTCTC 1 cut(s) 826
BsrBI CCGCTC 1 cut(s) 751
BsrI ACTGG 1 cut(s) 475
BssECI CCNNGG 1 cut(s) 680
BssMI GATC 6 cut(s) 305, 318, 354, 487, 508, 571
Bst2UI CCWGG 2 cut(s) 681, 696
Bst6I CTCTTC 3 cut(s) 428, 512, 726
BstDEI CTNAG 3 cut(s) 30, 542, 710
BstENI CCTNNNNNAGG 1 cut(s) 313
BstF5I GGATG 2 cut(s) 187, 603
BstHHI GCGC 1 cut(s) 774
BstKTI GATC 6 cut(s) 308, 321, 357, 490, 511, 574
BstMAI GTCTC 5 cut(s) 72, 94, 116, 125, 826
BstMBI GATC 6 cut(s) 305, 318, 354, 487, 508, 571
BstMWI GCNNNNNNNGC 2 cut(s) 590, 780
BstNI CCWGG 2 cut(s) 681, 696
BstNSI RCATGY 1 cut(s) 455
BstSCI CCNGG 2 cut(s) 679, 694
BstX2I RGATCY 1 cut(s) 305
BstYI RGATCY 1 cut(s) 305
BsuRI GGCC 2 cut(s) 538, 870
BtsCI GGATG 2 cut(s) 187, 603
BtsI GCAGTG 1 cut(s) 811
BtsIMutI CAGTG 2 cut(s) 707, 811
CfoI GCGC 1 cut(s) 774
Cfr13I GGNCC 2 cut(s) 536, 868
CsiI ACCWGGT 1 cut(s) 694
CviAII CATG 3 cut(s) 158, 452, 777
CviJI RGCY 6 cut(s) 232, 538, 551, 566, 615, 870
CviKI_1 RGCY 6 cut(s) 232, 538, 551, 566, 615, 870
DdeI CTNAG 3 cut(s) 30, 542, 710
DpnI GATC 6 cut(s) 307, 320, 356, 489, 510, 573
DpnII GATC 6 cut(s) 305, 318, 354, 487, 508, 571
DriI GACNNNNNGTC 1 cut(s) 46
Eam1104I CTCTTC 3 cut(s) 428, 512, 726
Eam1105I GACNNNNNGTC 1 cut(s) 46
EarI CTCTTC 3 cut(s) 428, 512, 726
Eco31I GGTCTC 1 cut(s) 826
Eco57I CTGAAG 1 cut(s) 516
Eco88I CYCGRG 1 cut(s) 567
EcoNI CCTNNNNNAGG 1 cut(s) 313
EcoRII CCWGG 2 cut(s) 679, 694
Esp3I CGTCTC 3 cut(s) 72, 94, 116
FaeI CATG 3 cut(s) 161, 455, 780
FalI AAGNNNNNCTT 2 cut(s) 489, 521
FatI CATG 3 cut(s) 157, 451, 776
FauNDI CATATG 1 cut(s) 658
FokI GGATG 2 cut(s) 194, 610
FspBI CTAG 1 cut(s) 315
GlaI GCGC 1 cut(s) 773
HaeIII GGCC 2 cut(s) 538, 870
HhaI GCGC 1 cut(s) 774
Hin1II CATG 3 cut(s) 161, 455, 780
Hin6I GCGC 1 cut(s) 772
HinP1I GCGC 1 cut(s) 772
HindIII AAGCTT 2 cut(s) 230, 549
HinfI GANTC 2 cut(s) 142, 739
HphI GGTGA 1 cut(s) 137
Hpy166II GTNNAC 2 cut(s) 6, 816
Hpy188I TCNGA 2 cut(s) 33, 651
Hpy188III TCNNGA 6 cut(s) 179, 345, 413, 506, 569, 879
Hpy8I GTNNAC 2 cut(s) 6, 816
Hpy99I CGWCG 1 cut(s) 67
HpyCH4V TGCA 8 cut(s) 53, 130, 279, 366, 593, 632, 727, 804
HpyF10VI GCNNNNNNNGC 2 cut(s) 590, 780
HpyF3I CTNAG 3 cut(s) 30, 542, 710
Hsp92II CATG 3 cut(s) 161, 455, 780
HspAI GCGC 1 cut(s) 772
Kzo9I GATC 6 cut(s) 305, 318, 354, 487, 508, 571
LmnI GCTCC 3 cut(s) 64, 448, 780
LweI GCATC 2 cut(s) 571, 811
MabI ACCWGGT 1 cut(s) 694
MaeI CTAG 1 cut(s) 315
MaeIII GTNAC 2 cut(s) 698, 740
MalI GATC 6 cut(s) 307, 320, 356, 489, 510, 573
MbiI CCGCTC 1 cut(s) 751
MboI GATC 6 cut(s) 305, 318, 354, 487, 508, 571
MboII GAAGA 5 cut(s) 9, 445, 509, 529, 713
MfeI CAATTG 2 cut(s) 54, 855
MflI RGATCY 1 cut(s) 305
MhlI GDGCHC 1 cut(s) 785
MluCI AATT 7 cut(s) 35, 54, 196, 269, 280, 846, 855
MlyI GAGTC 1 cut(s) 748
MmeI TCCRAC 2 cut(s) 99, 784
MnlI CCTC 6 cut(s) 39, 248, 251, 549, 556, 767
MseI TTAA 4 cut(s) 335, 555, 624, 843
MslI CAYNNNNRTG 1 cut(s) 162
MspA1I CMGCKG 1 cut(s) 211
MspR9I CCNGG 2 cut(s) 681, 696
MunI CAATTG 2 cut(s) 54, 855
MvaI CCWGG 2 cut(s) 681, 696
MwoI GCNNNNNNNGC 2 cut(s) 590, 780
NdeI CATATG 1 cut(s) 658
NdeII GATC 6 cut(s) 305, 318, 354, 487, 508, 571
NlaIII CATG 3 cut(s) 161, 455, 780
NlaIV GGNNCC 2 cut(s) 307, 755
NmuCI GTSAC 1 cut(s) 740
NspI RCATGY 1 cut(s) 455
PaeR7I CTCGAG 1 cut(s) 567
PciI ACATGT 1 cut(s) 451
PfeI GAWTC 1 cut(s) 142
PleI GAGTC 1 cut(s) 747
PpsI GAGTC 1 cut(s) 747
PscI ACATGT 1 cut(s) 451
PsiI TTATAA 2 cut(s) 201, 300
Psp6I CCWGG 2 cut(s) 679, 694
PspGI CCWGG 2 cut(s) 679, 694
PspN4I GGNNCC 2 cut(s) 307, 755
PspPI GGNCC 2 cut(s) 536, 868
PsuI RGATCY 1 cut(s) 305
RseI CAYNNNNRTG 1 cut(s) 162
SaqAI TTAA 4 cut(s) 335, 555, 624, 843
Sau3AI GATC 6 cut(s) 305, 318, 354, 487, 508, 571
Sau96I GGNCC 2 cut(s) 536, 868
SchI GAGTC 1 cut(s) 748
ScrFI CCNGG 2 cut(s) 681, 696
SduI GDGCHC 1 cut(s) 785
SexAI ACCWGGT 1 cut(s) 694
SfaNI GCATC 2 cut(s) 571, 811
Sfr274I CTCGAG 1 cut(s) 567
SlaI CTCGAG 1 cut(s) 567
SmiMI CAYNNNNRTG 1 cut(s) 162
SmlI CTYRAG 1 cut(s) 567
SmoI CTYRAG 1 cut(s) 567
Sse9I AATT 7 cut(s) 35, 54, 196, 269, 280, 846, 855
SsiI CCGC 4 cut(s) 209, 392, 641, 751
SspMI CTAG 1 cut(s) 315
StyD4I CCNGG 2 cut(s) 679, 694
TaqI TCGA 3 cut(s) 24, 412, 568
TasI AATT 7 cut(s) 35, 54, 196, 269, 280, 846, 855
TfiI GAWTC 1 cut(s) 142
Tru1I TTAA 4 cut(s) 335, 555, 624, 843
Tru9I TTAA 4 cut(s) 335, 555, 624, 843
TscAI CASTG 2 cut(s) 714, 811
TseFI GTSAC 1 cut(s) 740
Tsp45I GTSAC 1 cut(s) 740
TspDTI ATGAA 6 cut(s) 73, 155, 317, 396, 413, 465
TspGWI ACGGA 3 cut(s) 51, 60, 113
TspRI CASTG 2 cut(s) 714, 811
XagI CCTNNNNNAGG 1 cut(s) 313
XapI RAATTY 1 cut(s) 269
XceI RCATGY 1 cut(s) 455
XhoI CTCGAG 1 cut(s) 567
XspI CTAG 1 cut(s) 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.