Rh1DG134700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000421
Physical Location & Seq
Reverse (-)
28226228 .. 28228531
2304 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG134700.1

Sequence Viewer

Length: 270 bp
ATGATGAGAGAGATAGCCGCGTTGGAAGATGACAATGTGATAACATCAACAGAGAAAACATATATTCCTATTGAGACAATAAGTGTTGTAAAAAAGTTTGAGGGAAAAGAGACATACACTCAAGAGGAGATTGATGTAGTTCGAGTAGAGTGGGCAGAGCAGGTTGATGGATATATCCAAGACGAAGTATTACTTGTTTTGGATGGTATGAATTCAGTTACATATGTAGCAGCAGCAGCTAGCTTTGAATTCTGTAGCAGCAGTAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

89

Amino Acids

9.98

Weight (kDa)

4.05

Isoelectric Point (pI)

27.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000421)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G08267
fragaria_vesca FvH4_2g14331 FvH4_2g16371 FvH4_2g26163 FvH4_3g42540 FvH4_4g02102 FvH4_4g12491 FvH4_4g35171 FvH4_5g06632 FvH4_5g06632 FvH4_5g06632 FvH4_5g08811 FvH4_5g08812 FvH4_5g23531 FvH4_6g10272 FvH4_6g40844 FvH4_7g16803 FvH4_7g16804
malus_domestica MD11G1099500.v1.1 MD17G1176800.v1.1
pyrus_communis pycom05g07840 pycom06g08730 pycom07g12010 pycom07g12020 pycom10g07270 pycom11g17470 pycom12g10610 pycom12g14240 pycom13g22040 pycom15g02440
rosa_chinensis RchiOBHm_Chr1g0371321 RchiOBHm_Chr2g0102701 RchiOBHm_Chr3g0465681 RchiOBHm_Chr4g0420941 RchiOBHm_Chr4g0434271 RchiOBHm_Chr4g0442721 RchiOBHm_Chr6g0262081 RchiOBHm_Chr6g0278171 RchiOBHm_Chr6g0294991 RchiOBHm_Chr6g0295001 RchiOBHm_Chr7g0205361 RchiOBHm_Chr7g0205371 RchiOBHm_Chr7g0223471
rosa_laevigata RLG00000005266
rosa_multiflora Rmu_sc0000493.1_g000033 Rmu_sc0000493.1_g000034 Rmu_sc0000507.1_g000007 Rmu_sc0000843.1_g000001 Rmu_sc0001075.1_g000033 Rmu_sc0002077.1_g000007 Rmu_sc0002077.1_g000008 Rmu_sc0002329.1_g000029 Rmu_sc0002539.1_g000077 Rmu_sc0002655.1_g000006 Rmu_sc0003127.1_g000020 Rmu_sc0003765.1_g000054 Rmu_sc0004368.1_g000023 Rmu_sc0004753.1_g000022 Rmu_sc0005297.1_g000014 Rmu_sc0007633.1_g000010 Rmu_sc0008164.1_g000005 Rmu_sc0008191.1_g000003 Rmu_sc0017900.1_g000005 Rmu_sc0022727.1_g000002
rosa_roxburghii Rroxscaffold_2G00079920 Rroxscaffold_3G00255890 Rroxscaffold_4G00295340 Rroxscaffold_4G00296360 Rroxscaffold_4G00299640 Rroxscaffold_6G00388210
rosa_rugosa Rorug02G0466700 Rorug04G0123200 Rorug05G0074800 Rorug07G0202900
rosa_samantha Rh1DG134700 Rh3CG159000 Rh4AG331000 Rh5AG521100 Rh5BG136400 Rh5DG127300 Rh5DG383100 Rh5DG386100 Rh5DG458000 Rh6CG450400 Rh7CG233800 Rh7DG407100
rosa_wichuraiana Rw1G004960 Rw1G005730 Rw1G006360 Rw1G017400 Rw2G013190 Rw2G022210 Rw2G029640 Rw5G020910 Rw5G036930 Rw6G016200 Rw7G018170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 151
AccII CGCG 1 cut(s) 20
AciI CCGC 1 cut(s) 18
AcsI RAATTY 2 cut(s) 211, 248
AgsI TTSAA 1 cut(s) 248
AluBI AGCT 3 cut(s) 239, 243, 267
AluI AGCT 3 cut(s) 239, 243, 267
Alw26I GTCTC 2 cut(s) 68, 104
ApeKI GCWGC 4 cut(s) 230, 233, 236, 258
ApoI RAATTY 2 cut(s) 211, 248
AsuNHI GCTAGC 1 cut(s) 239
BbvI GCAGC 3 cut(s) 242, 245, 248
BccI CCATC 2 cut(s) 161, 197
BcoDI GTCTC 2 cut(s) 68, 104
BfaI CTAG 2 cut(s) 240, 268
BfmI CTRYAG 1 cut(s) 253
BfuAI ACCTGC 1 cut(s) 151
BisI GCNGC 5 cut(s) 18, 231, 234, 237, 259
BlsI GCNGC 5 cut(s) 19, 232, 235, 238, 260
BmtI GCTAGC 1 cut(s) 243
BpuEI CTTGAG 1 cut(s) 105
BseGI GGATG 1 cut(s) 208
BseRI GAGGAG 1 cut(s) 140
BseXI GCAGC 3 cut(s) 242, 245, 248
Bsh1236I CGCG 1 cut(s) 20
BsmAI GTCTC 2 cut(s) 68, 104
BspACI CCGC 1 cut(s) 18
BspFNI CGCG 1 cut(s) 20
BspMI ACCTGC 1 cut(s) 151
BspOI GCTAGC 1 cut(s) 243
BstC8I GCNNGC 1 cut(s) 241
BstF5I GGATG 1 cut(s) 208
BstFNI CGCG 1 cut(s) 20
BstMAI GTCTC 2 cut(s) 68, 104
BstMWI GCNNNNNNNGC 2 cut(s) 236, 264
BstSFI CTRYAG 1 cut(s) 253
BstUI CGCG 1 cut(s) 20
BstV1I GCAGC 3 cut(s) 242, 245, 248
BtsCI GGATG 1 cut(s) 208
BveI ACCTGC 1 cut(s) 151
Cac8I GCNNGC 1 cut(s) 241
CviJI RGCY 4 cut(s) 17, 239, 243, 267
CviKI_1 RGCY 4 cut(s) 17, 239, 243, 267
EcoRI GAATTC 2 cut(s) 211, 248
FaiI YATR 7 cut(s) 61, 63, 115, 174, 209, 223, 225
FalI AAGNNNNNCTT 2 cut(s) 177, 209
FauNDI CATATG 1 cut(s) 223
Fnu4HI GCNGC 5 cut(s) 18, 231, 234, 237, 259
FokI GGATG 1 cut(s) 215
Fsp4HI GCNGC 5 cut(s) 18, 231, 234, 237, 259
FspBI CTAG 2 cut(s) 240, 268
GluI GCNGC 5 cut(s) 18, 231, 234, 237, 259
Hpy188III TCNNGA 1 cut(s) 122
HpyF10VI GCNNNNNNNGC 2 cut(s) 236, 264
LpnPI CCDG 1 cut(s) 146
Lsp1109I GCAGC 3 cut(s) 242, 245, 248
MaeI CTAG 2 cut(s) 240, 268
MaeIII GTNAC 1 cut(s) 217
MboII GAAGA 1 cut(s) 38
MluCI AATT 2 cut(s) 211, 248
MnlI CCTC 2 cut(s) 94, 118
MvnI CGCG 1 cut(s) 20
MwoI GCNNNNNNNGC 2 cut(s) 236, 264
NdeI CATATG 1 cut(s) 223
NheI GCTAGC 1 cut(s) 239
PkrI GCNGC 5 cut(s) 19, 232, 235, 238, 260
SatI GCNGC 5 cut(s) 18, 231, 234, 237, 259
SetI ASST 4 cut(s) 165, 241, 245, 269
SfcI CTRYAG 1 cut(s) 253
SgeI CNNG 7 cut(s) 31, 134, 155, 173, 191, 206, 252
SmlI CTYRAG 1 cut(s) 120
SmoI CTYRAG 1 cut(s) 120
Sse9I AATT 2 cut(s) 211, 248
SsiI CCGC 1 cut(s) 18
SspMI CTAG 2 cut(s) 240, 268
TaqI TCGA 1 cut(s) 142
TasI AATT 2 cut(s) 211, 248
TauI GCSGC 1 cut(s) 20
TseI GCWGC 4 cut(s) 230, 233, 236, 258
TspDTI ATGAA 1 cut(s) 224
XapI RAATTY 2 cut(s) 211, 248
XspI CTAG 2 cut(s) 240, 268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.