FvH4_5g08811

hAT family C-terminal dimerisation region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000421
Physical Location & Seq
Reverse (-)
5063175 .. 5064082
908 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g08811.t1

Sequence Viewer

Length: 711 bp
ATGAATGATGCGGTGCACAAAATTCTATTGTCTCGTTGGAGCAAAGCCAATACACCCCTCCATTGCTTGGCACATTCTTTGAATCCCAAGTACTATAGTTCGGAATGGCTTGATGAAGATTCCCATCGGGTTGCTCCTCACAAGGATTTAGATGTTACAAGGGAAAGGAAAAATTGTTTTCTTCGATACTTTGCCAATGAGGATGATAGAAGAAATGCTAACATAGAGTATGCTAATTTTTCTATGTGTATGCAAGGGTTTGGAAGTGGAGATGTGATGAAGGATAGATTTATATTAGAGCCACTAACATGGTGGGTGATTCATGGATCTTCGGCACCAATTCTCCAAGCCATAGCCTTTAAGGTGTTAGGTCAACCTTCTTCTTCCTCATATTGTGAAAGGAATTGGAGTACTTACAATTTCATTCACTCTTTGAAGAGGAACAAGTTAGCACCACAAAGAGCGGAAAATTTGGTATTTGTGCATACCAATCTTCGCCTTTTAGCTAGGCAATGCCCAACTTACAACAAGGGTGCATCTCATATGTGGGATATTGGAGGTGATGACTTTGATTCATTGGAAGACTCTAATGTTGGAAGGCTTGAGATTGCTAACCTTTCACTTGATGAGCCATTGTTGGAGTCGGTCTTGTTTGAAGATGATGAGTTTGAAGAGGAAAACATTGAGGATGATGATGTTGTTGAAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Dimer_Tnp_hAT

Protein Analysis

237

Amino Acids

27.22

Weight (kDa)

4.95

Isoelectric Point (pI)

54.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dimer_Tnp_hAT PF05699 93 - 165 8.8e-13 hAT family C-terminal dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000421)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G08267
fragaria_vesca FvH4_2g14331 FvH4_2g16371 FvH4_2g26163 FvH4_3g42540 FvH4_4g02102 FvH4_4g12491 FvH4_4g35171 FvH4_5g06632 FvH4_5g06632 FvH4_5g06632 FvH4_5g08811 FvH4_5g08812 FvH4_5g23531 FvH4_6g10272 FvH4_6g40844 FvH4_7g16803 FvH4_7g16804
malus_domestica MD11G1099500.v1.1 MD17G1176800.v1.1
pyrus_communis pycom05g07840 pycom06g08730 pycom07g12010 pycom07g12020 pycom10g07270 pycom11g17470 pycom12g10610 pycom12g14240 pycom13g22040 pycom15g02440
rosa_chinensis RchiOBHm_Chr1g0371321 RchiOBHm_Chr2g0102701 RchiOBHm_Chr3g0465681 RchiOBHm_Chr4g0420941 RchiOBHm_Chr4g0434271 RchiOBHm_Chr4g0442721 RchiOBHm_Chr6g0262081 RchiOBHm_Chr6g0278171 RchiOBHm_Chr6g0294991 RchiOBHm_Chr6g0295001 RchiOBHm_Chr7g0205361 RchiOBHm_Chr7g0205371 RchiOBHm_Chr7g0223471
rosa_laevigata RLG00000005266
rosa_multiflora Rmu_sc0000493.1_g000033 Rmu_sc0000493.1_g000034 Rmu_sc0000507.1_g000007 Rmu_sc0000843.1_g000001 Rmu_sc0001075.1_g000033 Rmu_sc0002077.1_g000007 Rmu_sc0002077.1_g000008 Rmu_sc0002329.1_g000029 Rmu_sc0002539.1_g000077 Rmu_sc0002655.1_g000006 Rmu_sc0003127.1_g000020 Rmu_sc0003765.1_g000054 Rmu_sc0004368.1_g000023 Rmu_sc0004753.1_g000022 Rmu_sc0005297.1_g000014 Rmu_sc0007633.1_g000010 Rmu_sc0008164.1_g000005 Rmu_sc0008191.1_g000003 Rmu_sc0017900.1_g000005 Rmu_sc0022727.1_g000002
rosa_roxburghii Rroxscaffold_2G00079920 Rroxscaffold_3G00255890 Rroxscaffold_4G00295340 Rroxscaffold_4G00296360 Rroxscaffold_4G00299640 Rroxscaffold_6G00388210
rosa_rugosa Rorug02G0466700 Rorug04G0123200 Rorug05G0074800 Rorug07G0202900
rosa_samantha Rh1DG134700 Rh3CG159000 Rh4AG331000 Rh5AG521100 Rh5BG136400 Rh5DG127300 Rh5DG383100 Rh5DG386100 Rh5DG458000 Rh6CG450400 Rh7CG233800 Rh7DG407100
rosa_wichuraiana Rw1G004960 Rw1G005730 Rw1G006360 Rw1G017400 Rw2G013190 Rw2G022210 Rw2G029640 Rw5G020910 Rw5G036930 Rw6G016200 Rw7G018170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 334
AccB7I CCANNNNNTGG 1 cut(s) 67
AccBSI CCGCTC 1 cut(s) 464
AciI CCGC 2 cut(s) 11, 464
AclWI GGATC 1 cut(s) 334
AcsI RAATTY 2 cut(s) 21, 469
AfaI GTAC 2 cut(s) 92, 412
AfiI CCNNNNNNNGG 1 cut(s) 67
AgsI TTSAA 5 cut(s) 82, 436, 656, 671, 704
AluBI AGCT 2 cut(s) 506, 707
AluI AGCT 2 cut(s) 506, 707
Alw21I GWGCWC 1 cut(s) 18
Alw26I GTCTC 1 cut(s) 36
Alw44I GTGCAC 1 cut(s) 14
AlwI GGATC 1 cut(s) 334
ApaLI GTGCAC 1 cut(s) 14
ApoI RAATTY 2 cut(s) 21, 469
AsuHPI GGTGA 2 cut(s) 328, 572
BaeGI GKGCMC 1 cut(s) 18
BanI GGYRCC 1 cut(s) 334
BbsI GAAGAC 1 cut(s) 588
Bbv12I GWGCWC 1 cut(s) 18
BccI CCATC 1 cut(s) 132
BcoDI GTCTC 1 cut(s) 36
BfaI CTAG 1 cut(s) 507
BfmI CTRYAG 1 cut(s) 94
BmcAI AGTACT 2 cut(s) 92, 412
BmiI GGNNCC 1 cut(s) 336
BmsI GCATC 1 cut(s) 545
BpiI GAAGAC 1 cut(s) 588
BpuEI CTTGAG 1 cut(s) 623
BsaBI GATNNNNATC 1 cut(s) 123
BsaXI ACNNNNNCTCC 2 cut(s) 327, 357
Bsc4I CCNNNNNNNGG 1 cut(s) 67
Bse3DI GCAATG 2 cut(s) 61, 518
Bse8I GATNNNNATC 1 cut(s) 123
BseGI GGATG 2 cut(s) 208, 694
BseJI GATNNNNATC 1 cut(s) 123
BseLI CCNNNNNNNGG 1 cut(s) 67
BseMI GCAATG 2 cut(s) 61, 518
BseRI GAGGAG 1 cut(s) 126
BseSI GKGCMC 1 cut(s) 18
BshNI GGYRCC 1 cut(s) 334
BsiHKAI GWGCWC 1 cut(s) 18
BslI CCNNNNNNNGG 1 cut(s) 67
BsmAI GTCTC 1 cut(s) 36
Bsp1286I GDGCHC 1 cut(s) 18
Bsp143I GATC 1 cut(s) 326
BspACI CCGC 2 cut(s) 11, 464
BspLI GGNNCC 1 cut(s) 336
BspPI GGATC 1 cut(s) 334
BspT107I GGYRCC 1 cut(s) 334
BsrBI CCGCTC 1 cut(s) 464
BsrDI GCAATG 2 cut(s) 61, 518
BssMI GATC 1 cut(s) 326
Bst6I CTCTTC 2 cut(s) 431, 666
BstF5I GGATG 2 cut(s) 208, 694
BstKTI GATC 1 cut(s) 329
BstMAI GTCTC 1 cut(s) 36
BstMBI GATC 1 cut(s) 326
BstSFI CTRYAG 1 cut(s) 94
BstSLI GKGCMC 1 cut(s) 18
BstV2I GAAGAC 1 cut(s) 588
BstX2I RGATCY 1 cut(s) 326
BstXI CCANNNNNNTGG 1 cut(s) 309
BstYI RGATCY 1 cut(s) 326
BtsCI GGATG 2 cut(s) 208, 694
Csp6I GTAC 2 cut(s) 91, 411
CviAII CATG 2 cut(s) 309, 323
CviJI RGCY 9 cut(s) 47, 109, 301, 350, 356, 506, 601, 631, 707
CviKI_1 RGCY 9 cut(s) 47, 109, 301, 350, 356, 506, 601, 631, 707
CviQI GTAC 2 cut(s) 91, 411
DpnI GATC 1 cut(s) 328
DpnII GATC 1 cut(s) 326
Eam1104I CTCTTC 2 cut(s) 431, 666
EarI CTCTTC 2 cut(s) 431, 666
FaeI CATG 2 cut(s) 312, 326
FatI CATG 2 cut(s) 308, 322
FauNDI CATATG 1 cut(s) 543
FokI GGATG 2 cut(s) 215, 701
FspBI CTAG 1 cut(s) 507
Hin1II CATG 2 cut(s) 312, 326
HincII GTYRAC 1 cut(s) 374
HindII GTYRAC 1 cut(s) 374
HindIII AAGCTT 1 cut(s) 705
HinfI GANTC 6 cut(s) 82, 119, 319, 572, 584, 641
HphI GGTGA 2 cut(s) 328, 572
Hpy166II GTNNAC 2 cut(s) 16, 374
Hpy188I TCNGA 1 cut(s) 103
Hpy8I GTNNAC 2 cut(s) 16, 374
HpyAV CCTTC 3 cut(s) 274, 387, 591
HpyCH4V TGCA 4 cut(s) 16, 253, 484, 536
Hsp92II CATG 2 cut(s) 312, 326
Kzo9I GATC 1 cut(s) 326
LmnI GCTCC 2 cut(s) 39, 139
LweI GCATC 1 cut(s) 545
MaeI CTAG 1 cut(s) 507
MaeIII GTNAC 1 cut(s) 154
MalI GATC 1 cut(s) 328
MbiI CCGCTC 1 cut(s) 464
MboI GATC 1 cut(s) 326
MflI RGATCY 1 cut(s) 326
MhlI GDGCHC 1 cut(s) 18
MluCI AATT 7 cut(s) 21, 172, 235, 339, 403, 418, 469
MlyI GAGTC 2 cut(s) 578, 650
MmeI TCCRAC 3 cut(s) 17, 574, 618
MnlI CCTC 8 cut(s) 68, 147, 193, 397, 432, 551, 667, 679
MseI TTAA 2 cut(s) 360, 709
MslI CAYNNNNRTG 1 cut(s) 307
NdeI CATATG 1 cut(s) 543
NdeII GATC 1 cut(s) 326
NlaIII CATG 2 cut(s) 312, 326
NlaIV GGNNCC 1 cut(s) 336
PfeI GAWTC 4 cut(s) 82, 119, 319, 572
PflMI CCANNNNNTGG 1 cut(s) 67
PleI GAGTC 2 cut(s) 578, 649
PpsI GAGTC 2 cut(s) 578, 649
PspN4I GGNNCC 1 cut(s) 336
PsuI RGATCY 1 cut(s) 326
RsaI GTAC 2 cut(s) 92, 412
RsaNI GTAC 2 cut(s) 91, 411
RseI CAYNNNNRTG 1 cut(s) 307
SaqAI TTAA 2 cut(s) 360, 709
Sau3AI GATC 1 cut(s) 326
ScaI AGTACT 2 cut(s) 92, 412
SchI GAGTC 2 cut(s) 578, 650
SduI GDGCHC 1 cut(s) 18
SetI ASST 7 cut(s) 366, 373, 379, 508, 562, 618, 709
SfaNI GCATC 1 cut(s) 545
SfcI CTRYAG 1 cut(s) 94
SmiMI CAYNNNNRTG 1 cut(s) 307
SmlI CTYRAG 1 cut(s) 602
SmoI CTYRAG 1 cut(s) 602
Sse9I AATT 7 cut(s) 21, 172, 235, 339, 403, 418, 469
SsiI CCGC 2 cut(s) 11, 464
SspMI CTAG 1 cut(s) 507
TaqI TCGA 1 cut(s) 184
TaqII GACCGA 1 cut(s) 634
TasI AATT 7 cut(s) 21, 172, 235, 339, 403, 418, 469
TatI WGTACW 2 cut(s) 90, 410
TfiI GAWTC 4 cut(s) 82, 119, 319, 572
Tru1I TTAA 2 cut(s) 360, 709
Tru9I TTAA 2 cut(s) 360, 709
TspDTI ATGAA 6 cut(s) 17, 129, 293, 311, 412, 564
Van91I CCANNNNNTGG 1 cut(s) 67
VneI GTGCAC 1 cut(s) 14
XapI RAATTY 2 cut(s) 21, 469
XcmI CCANNNNNNNNNTGG 1 cut(s) 309
XspI CTAG 1 cut(s) 507
ZrmI AGTACT 2 cut(s) 92, 412
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.