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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 288, 387 |
| AccB1I | GGYRCC | 1 cut(s) | 840 |
| AccBSI | CCGCTC | 1 cut(s) | 838 |
| AccII | CGCG | 3 cut(s) | 11, 33, 446 |
| AciI | CCGC | 6 cut(s) | 63, 296, 479, 728, 838, 1691 |
| AclWI | GGATC | 4 cut(s) | 387, 400, 449, 590 |
| AcsI | RAATTY | 3 cut(s) | 110, 356, 1270 |
| AdeI | CACNNNGTG | 2 cut(s) | 1151, 1594 |
| AfaI | GTAC | 2 cut(s) | 1192, 1442 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 402, 557, 1432 |
| AflIII | ACRYGT | 3 cut(s) | 9, 31, 538 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 129 |
| AjnI | CCWGG | 2 cut(s) | 766, 781 |
| AleI | CACNNNNGTG | 1 cut(s) | 1367 |
| Alw21I | GWGCWC | 2 cut(s) | 872, 2093 |
| Alw26I | GTCTC | 7 cut(s) | 155, 177, 199, 913, 2027, 2315, 2337 |
| AlwI | GGATC | 4 cut(s) | 387, 400, 449, 590 |
| Ama87I | CYCGRG | 1 cut(s) | 654 |
| AoxI | GGCC | 3 cut(s) | 623, 956, 1119 |
| ApeKI | GCWGC | 4 cut(s) | 941, 1100, 1634, 1677 |
| ApoI | RAATTY | 3 cut(s) | 110, 356, 1270 |
| AseI | ATTAAT | 2 cut(s) | 930, 978 |
| AspLEI | GCGC | 3 cut(s) | 448, 861, 1656 |
| AspS9I | GGNCC | 4 cut(s) | 623, 956, 1120, 1260 |
| AsuHPI | GGTGA | 7 cut(s) | 196, 224, 1001, 1429, 1486, 1639, 2273 |
| AvaI | CYCGRG | 1 cut(s) | 654 |
| AvaII | GGWCC | 1 cut(s) | 1260 |
| BamHI | GGATCC | 1 cut(s) | 392 |
| BanI | GGYRCC | 1 cut(s) | 840 |
| BbsI | GAAGAC | 2 cut(s) | 1577, 1803 |
| Bbv12I | GWGCWC | 2 cut(s) | 872, 2093 |
| BbvCI | CCTCAGC | 1 cut(s) | 2145 |
| BbvI | GCAGC | 4 cut(s) | 953, 1087, 1621, 1689 |
| BccI | CCATC | 4 cut(s) | 890, 1465, 1710, 2237 |
| BciT130I | CCWGG | 2 cut(s) | 768, 783 |
| BciVI | GTATCC | 1 cut(s) | 43 |
| BclI | TGATCA | 1 cut(s) | 1071 |
| BcoDI | GTCTC | 7 cut(s) | 155, 177, 199, 913, 2027, 2315, 2337 |
| BfaI | CTAG | 4 cut(s) | 402, 1248, 1803, 2019 |
| BfuI | GTATCC | 1 cut(s) | 43 |
| BisI | GCNGC | 4 cut(s) | 942, 1101, 1635, 1678 |
| BlsI | GCNGC | 4 cut(s) | 943, 1102, 1636, 1679 |
| Bme1390I | CCNGG | 2 cut(s) | 768, 783 |
| Bme18I | GGWCC | 1 cut(s) | 1260 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 129 |
| BmeT110I | CYCGRG | 1 cut(s) | 654 |
| BmgT120I | GGNCC | 4 cut(s) | 623, 956, 1120, 1260 |
| BmiI | GGNNCC | 4 cut(s) | 394, 842, 1790, 1980 |
| BmrFI | CCNGG | 2 cut(s) | 768, 783 |
| BmsI | GCATC | 7 cut(s) | 658, 898, 1243, 1362, 1600, 1678, 2268 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1803 |
| BpiI | GAAGAC | 2 cut(s) | 1577, 1803 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 514, 546, 790, 822, 1898, 1930 |
| BpmI | CTGGAG | 1 cut(s) | 2358 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2145 |
| BpuEI | CTTGAG | 1 cut(s) | 988 |
| BsaI | GGTCTC | 1 cut(s) | 913 |
| BsaJI | CCNNGG | 3 cut(s) | 767, 1766, 2002 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 2007, 2037 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 402, 557, 1432 |
| Bse1I | ACTGG | 3 cut(s) | 562, 1982, 2341 |
| Bse3DI | GCAATG | 3 cut(s) | 1315, 1338, 1473 |
| BseBI | CCWGG | 2 cut(s) | 768, 783 |
| BseDI | CCNNGG | 3 cut(s) | 767, 1766, 2002 |
| BseGI | GGATG | 6 cut(s) | 274, 690, 1498, 1615, 2236, 2283 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 402, 557, 1432 |
| BseMI | GCAATG | 3 cut(s) | 1315, 1338, 1473 |
| BseMII | CTCAG | 4 cut(s) | 113, 643, 788, 2136 |
| BseNI | ACTGG | 3 cut(s) | 562, 1982, 2341 |
| BseRI | GAGGAG | 5 cut(s) | 354, 357, 2056, 2253, 2355 |
| BseXI | GCAGC | 4 cut(s) | 953, 1087, 1621, 1689 |
| BseYI | CCCAGC | 1 cut(s) | 1103 |
| Bsh1236I | CGCG | 3 cut(s) | 11, 33, 446 |
| BshFI | GGCC | 3 cut(s) | 625, 958, 1121 |
| BshNI | GGYRCC | 1 cut(s) | 840 |
| BsiHKAI | GWGCWC | 2 cut(s) | 872, 2093 |
| BsiHKCI | CYCGRG | 1 cut(s) | 654 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 402, 557, 1432 |
| BsmAI | GTCTC | 7 cut(s) | 155, 177, 199, 913, 2027, 2315, 2337 |
| BsmBI | CGTCTC | 3 cut(s) | 155, 177, 199 |
| BsnI | GGCC | 3 cut(s) | 625, 958, 1121 |
| Bso31I | GGTCTC | 1 cut(s) | 913 |
| BsoBI | CYCGRG | 1 cut(s) | 654 |
| Bsp1286I | GDGCHC | 2 cut(s) | 872, 2093 |
| Bsp1407I | TGTACA | 1 cut(s) | 1440 |
| Bsp143I | GATC | 6 cut(s) | 392, 441, 574, 595, 658, 1071 |
| Bsp19I | CCATGG | 1 cut(s) | 2002 |
| BspACI | CCGC | 6 cut(s) | 63, 296, 479, 728, 838, 1691 |
| BspANI | GGCC | 3 cut(s) | 625, 958, 1121 |
| BspCNI | CTCAG | 4 cut(s) | 112, 642, 789, 2137 |
| BspFNI | CGCG | 3 cut(s) | 11, 33, 446 |
| BspHI | TCATGA | 2 cut(s) | 1051, 2349 |
| BspLI | GGNNCC | 4 cut(s) | 394, 842, 1790, 1980 |
| BspPI | GGATC | 4 cut(s) | 387, 400, 449, 590 |
| BspT107I | GGYRCC | 1 cut(s) | 840 |
| BspTNI | GGTCTC | 1 cut(s) | 913 |
| BsrBI | CCGCTC | 1 cut(s) | 838 |
| BsrDI | GCAATG | 3 cut(s) | 1315, 1338, 1473 |
| BsrGI | TGTACA | 1 cut(s) | 1440 |
| BsrI | ACTGG | 3 cut(s) | 562, 1982, 2341 |
| BssECI | CCNNGG | 3 cut(s) | 767, 1766, 2002 |
| BssMI | GATC | 6 cut(s) | 392, 441, 574, 595, 658, 1071 |
| BssT1I | CCWWGG | 2 cut(s) | 1766, 2002 |
| Bst2UI | CCWGG | 2 cut(s) | 768, 783 |
| Bst4CI | ACNGT | 3 cut(s) | 22, 208, 2313 |
| Bst6I | CTCTTC | 5 cut(s) | 515, 599, 813, 818, 1175 |
| BstAUI | TGTACA | 1 cut(s) | 1440 |
| BstDEI | CTNAG | 5 cut(s) | 99, 629, 797, 1376, 2145 |
| BstDSI | CCRYGG | 1 cut(s) | 2002 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 400 |
| BstF5I | GGATG | 6 cut(s) | 274, 690, 1498, 1615, 2236, 2283 |
| BstFNI | CGCG | 3 cut(s) | 11, 33, 446 |
| BstHHI | GCGC | 3 cut(s) | 448, 861, 1656 |
| BstKTI | GATC | 6 cut(s) | 395, 444, 577, 598, 661, 1074 |
| BstMAI | GTCTC | 7 cut(s) | 155, 177, 199, 913, 2027, 2315, 2337 |
| BstMBI | GATC | 6 cut(s) | 392, 441, 574, 595, 658, 1071 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 677, 867, 1253 |
| BstNI | CCWGG | 2 cut(s) | 768, 783 |
| BstNSI | RCATGY | 1 cut(s) | 542 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1803 |
| BstSCI | CCNGG | 2 cut(s) | 766, 781 |
| BstUI | CGCG | 3 cut(s) | 11, 33, 446 |
| BstV1I | GCAGC | 4 cut(s) | 953, 1087, 1621, 1689 |
| BstV2I | GAAGAC | 2 cut(s) | 1577, 1803 |
| BstX2I | RGATCY | 1 cut(s) | 392 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1989 |
| BstYI | RGATCY | 1 cut(s) | 392 |
| BsuI | GTATCC | 1 cut(s) | 43 |
| BsuRI | GGCC | 3 cut(s) | 625, 958, 1121 |
| BtgI | CCRYGG | 1 cut(s) | 2002 |
| BtgZI | GCGATG | 1 cut(s) | 1729 |
| BtsCI | GGATG | 6 cut(s) | 274, 690, 1498, 1615, 2236, 2283 |
| BtsI | GCAGTG | 1 cut(s) | 898 |
| BtsIMutI | CAGTG | 4 cut(s) | 794, 898, 1074, 1989 |
| CciI | TCATGA | 2 cut(s) | 1051, 2349 |
| CfoI | GCGC | 3 cut(s) | 448, 861, 1656 |
| Cfr13I | GGNCC | 4 cut(s) | 623, 956, 1120, 1260 |
| CsiI | ACCWGGT | 1 cut(s) | 781 |
| Csp6I | GTAC | 2 cut(s) | 1191, 1441 |
| CviAII | CATG | 9 cut(s) | 245, 539, 864, 1052, 1291, 1303, 1667, 2003, 2350 |
| CviQI | GTAC | 2 cut(s) | 1191, 1441 |
| DdeI | CTNAG | 5 cut(s) | 99, 629, 797, 1376, 2145 |
| DpnI | GATC | 6 cut(s) | 394, 443, 576, 597, 660, 1073 |
| DpnII | GATC | 6 cut(s) | 392, 441, 574, 595, 658, 1071 |
| DraIII | CACNNNGTG | 2 cut(s) | 1151, 1594 |
| DriI | GACNNNNNGTC | 1 cut(s) | 129 |
| Eam1104I | CTCTTC | 5 cut(s) | 515, 599, 813, 818, 1175 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 129 |
| EarI | CTCTTC | 5 cut(s) | 515, 599, 813, 818, 1175 |
| Eco130I | CCWWGG | 2 cut(s) | 1766, 2002 |
| Eco31I | GGTCTC | 1 cut(s) | 913 |
| Eco47I | GGWCC | 1 cut(s) | 1260 |
| Eco88I | CYCGRG | 1 cut(s) | 654 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 400 |
| EcoRI | GAATTC | 1 cut(s) | 110 |
| EcoRII | CCWGG | 2 cut(s) | 766, 781 |
| EcoT14I | CCWWGG | 2 cut(s) | 1766, 2002 |
| ErhI | CCWWGG | 2 cut(s) | 1766, 2002 |
| Esp3I | CGTCTC | 3 cut(s) | 155, 177, 199 |
| FaeI | CATG | 9 cut(s) | 248, 542, 867, 1055, 1294, 1306, 1670, 2006, 2353 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1342, 1374 |
| FatI | CATG | 9 cut(s) | 244, 538, 863, 1051, 1290, 1302, 1666, 2002, 2349 |
| FauNDI | CATATG | 1 cut(s) | 745 |
| FbaI | TGATCA | 1 cut(s) | 1071 |
| Fnu4HI | GCNGC | 4 cut(s) | 942, 1101, 1635, 1678 |
| FokI | GGATG | 6 cut(s) | 281, 697, 1505, 1622, 2243, 2290 |
| Fsp4HI | GCNGC | 4 cut(s) | 942, 1101, 1635, 1678 |
| FspBI | CTAG | 4 cut(s) | 402, 1248, 1803, 2019 |
| GlaI | GCGC | 3 cut(s) | 447, 860, 1655 |
| GluI | GCNGC | 4 cut(s) | 942, 1101, 1635, 1678 |
| GsaI | CCCAGC | 1 cut(s) | 1107 |
| GsuI | CTGGAG | 1 cut(s) | 2358 |
| HaeIII | GGCC | 3 cut(s) | 625, 958, 1121 |
| HhaI | GCGC | 3 cut(s) | 448, 861, 1656 |
| Hin1II | CATG | 9 cut(s) | 248, 542, 867, 1055, 1294, 1306, 1670, 2006, 2353 |
| Hin6I | GCGC | 3 cut(s) | 446, 859, 1654 |
| HinP1I | GCGC | 3 cut(s) | 446, 859, 1654 |
| HindIII | AAGCTT | 1 cut(s) | 636 |
| HinfI | GANTC | 4 cut(s) | 70, 229, 826, 1952 |
| HphI | GGTGA | 7 cut(s) | 196, 224, 1001, 1429, 1486, 1639, 2273 |
| Hpy166II | GTNNAC | 4 cut(s) | 903, 1159, 1406, 2107 |
| Hpy188I | TCNGA | 9 cut(s) | 49, 102, 109, 116, 123, 135, 738, 1197, 1783 |
| Hpy8I | GTNNAC | 4 cut(s) | 903, 1159, 1406, 2107 |
| Hpy99I | CGWCG | 3 cut(s) | 150, 172, 194 |
| HpyAV | CCTTC | 5 cut(s) | 980, 1381, 1394, 2112, 2204 |
| HpyCH4III | ACNGT | 3 cut(s) | 22, 208, 2313 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 677, 867, 1253 |
| HpyF3I | CTNAG | 5 cut(s) | 99, 629, 797, 1376, 2145 |
| Hsp92II | CATG | 9 cut(s) | 248, 542, 867, 1055, 1294, 1306, 1670, 2006, 2353 |
| HspAI | GCGC | 3 cut(s) | 446, 859, 1654 |
| Ksp22I | TGATCA | 1 cut(s) | 1071 |
| Kzo9I | GATC | 6 cut(s) | 392, 441, 574, 595, 658, 1071 |
| Lsp1109I | GCAGC | 4 cut(s) | 953, 1087, 1621, 1689 |
| LweI | GCATC | 7 cut(s) | 658, 898, 1243, 1362, 1600, 1678, 2268 |
| MabI | ACCWGGT | 1 cut(s) | 781 |
| MaeI | CTAG | 4 cut(s) | 402, 1248, 1803, 2019 |
| MaeIII | GTNAC | 7 cut(s) | 202, 460, 785, 827, 1107, 1329, 2332 |
| MalI | GATC | 6 cut(s) | 394, 443, 576, 597, 660, 1073 |
| MbiI | CCGCTC | 1 cut(s) | 838 |
| MboI | GATC | 6 cut(s) | 392, 441, 574, 595, 658, 1071 |
| MfeI | CAATTG | 3 cut(s) | 1228, 1839, 2222 |
| MflI | RGATCY | 1 cut(s) | 392 |
| MhlI | GDGCHC | 2 cut(s) | 872, 2093 |
| MluI | ACGCGT | 2 cut(s) | 9, 31 |
| MlyI | GAGTC | 1 cut(s) | 835 |
| MmeI | TCCRAC | 4 cut(s) | 182, 204, 871, 2215 |
| MslI | CAYNNNNRTG | 5 cut(s) | 249, 1056, 1367, 1824, 2354 |
| MspA1I | CMGCKG | 1 cut(s) | 298 |
| MspR9I | CCNGG | 2 cut(s) | 768, 783 |
| MunI | CAATTG | 3 cut(s) | 1228, 1839, 2222 |
| MvaI | CCWGG | 2 cut(s) | 768, 783 |
| MvnI | CGCG | 3 cut(s) | 11, 33, 446 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 677, 867, 1253 |
| NcoI | CCATGG | 1 cut(s) | 2002 |
| NdeI | CATATG | 1 cut(s) | 745 |
| NdeII | GATC | 6 cut(s) | 392, 441, 574, 595, 658, 1071 |
| NlaIII | CATG | 9 cut(s) | 248, 542, 867, 1055, 1294, 1306, 1670, 2006, 2353 |
| NlaIV | GGNNCC | 4 cut(s) | 394, 842, 1790, 1980 |
| NmuCI | GTSAC | 2 cut(s) | 202, 827 |
| NspI | RCATGY | 1 cut(s) | 542 |
| OliI | CACNNNNGTG | 1 cut(s) | 1367 |
| PaeR7I | CTCGAG | 1 cut(s) | 654 |
| PagI | TCATGA | 2 cut(s) | 1051, 2349 |
| PciI | ACATGT | 1 cut(s) | 538 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 30, 173 |
| PfeI | GAWTC | 3 cut(s) | 70, 229, 1952 |
| PkrI | GCNGC | 4 cut(s) | 943, 1102, 1636, 1679 |
| PleI | GAGTC | 1 cut(s) | 834 |
| PpsI | GAGTC | 1 cut(s) | 834 |
| PscI | ACATGT | 1 cut(s) | 538 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1803 |
| PshBI | ATTAAT | 2 cut(s) | 930, 978 |
| PsiI | TTATAA | 2 cut(s) | 288, 387 |
| Psp6I | CCWGG | 2 cut(s) | 766, 781 |
| PspFI | CCCAGC | 1 cut(s) | 1103 |
| PspGI | CCWGG | 2 cut(s) | 766, 781 |
| PspN4I | GGNNCC | 4 cut(s) | 394, 842, 1790, 1980 |
| PspPI | GGNCC | 4 cut(s) | 623, 956, 1120, 1260 |
| PsuI | RGATCY | 1 cut(s) | 392 |
| RsaI | GTAC | 2 cut(s) | 1192, 1442 |
| RsaNI | GTAC | 2 cut(s) | 1191, 1441 |
| RseI | CAYNNNNRTG | 5 cut(s) | 249, 1056, 1367, 1824, 2354 |
| SatI | GCNGC | 4 cut(s) | 942, 1101, 1635, 1678 |
| Sau3AI | GATC | 6 cut(s) | 392, 441, 574, 595, 658, 1071 |
| Sau96I | GGNCC | 4 cut(s) | 623, 956, 1120, 1260 |
| SchI | GAGTC | 1 cut(s) | 835 |
| ScrFI | CCNGG | 2 cut(s) | 768, 783 |
| SduI | GDGCHC | 2 cut(s) | 872, 2093 |
| SexAI | ACCWGGT | 1 cut(s) | 781 |
| SfaNI | GCATC | 7 cut(s) | 658, 898, 1243, 1362, 1600, 1678, 2268 |
| Sfr274I | CTCGAG | 1 cut(s) | 654 |
| SinI | GGWCC | 1 cut(s) | 1260 |
| SlaI | CTCGAG | 1 cut(s) | 654 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 249, 1056, 1367, 1824, 2354 |
| SmlI | CTYRAG | 2 cut(s) | 654, 967 |
| SmoI | CTYRAG | 2 cut(s) | 654, 967 |
| SsiI | CCGC | 6 cut(s) | 63, 296, 479, 728, 838, 1691 |
| SspI | AATATT | 1 cut(s) | 934 |
| SspMI | CTAG | 4 cut(s) | 402, 1248, 1803, 2019 |
| StyD4I | CCNGG | 2 cut(s) | 766, 781 |
| StyI | CCWWGG | 2 cut(s) | 1766, 2002 |
| TaaI | ACNGT | 3 cut(s) | 22, 208, 2313 |
| TaqI | TCGA | 4 cut(s) | 24, 321, 499, 655 |
| TatI | WGTACW | 2 cut(s) | 1190, 1440 |
| TfiI | GAWTC | 3 cut(s) | 70, 229, 1952 |
| TscAI | CASTG | 4 cut(s) | 801, 898, 1081, 1989 |
| TseFI | GTSAC | 2 cut(s) | 202, 827 |
| TseI | GCWGC | 4 cut(s) | 941, 1100, 1634, 1677 |
| Tsp45I | GTSAC | 2 cut(s) | 202, 827 |
| TspGWI | ACGGA | 3 cut(s) | 134, 143, 165 |
| TspRI | CASTG | 4 cut(s) | 801, 898, 1081, 1989 |
| VpaK11BI | GGWCC | 1 cut(s) | 1260 |
| VspI | ATTAAT | 2 cut(s) | 930, 978 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 400 |
| XapI | RAATTY | 3 cut(s) | 110, 356, 1270 |
| XceI | RCATGY | 1 cut(s) | 542 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1989 |
| XhoI | CTCGAG | 1 cut(s) | 654 |
| XspI | CTAG | 4 cut(s) | 402, 1248, 1803, 2019 |