RchiOBHm_Chr7g0205361

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000421
Physical Location & Seq
Forward (+)
23035114 .. 23036227
1114 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ18377

Sequence Viewer

Length: 1062 bp
ATGGATGAAGTAGTGGAGGTTCCAAAGAAGAGGAAGGGAGTAAGTGGACCGCTTGAAAAGGCGTTCAATAACAATGCTAGAGAACAATTGGATTGTGAAATAGCAAGAATGTTTTATACCGGTGGTTTGTCATTCAACCTTGCCAAGAATCCACACTATATTCGTTCTTATAATCGGGCTGCTTCTTGTCCAATTCCTGGTTATCGGCCACCTGGTTATAATGCTTTGAGAACCACTCTTCTACACAAAGAAAGGATGCACATTGAGAAGATGTTGGAACCGATTAAGCTCTCATGGCAACAAAAGGGTGTTAGTGTGTGTAGTGATGGGTGGTCCGATTCTCAAAGAAGACCACTTATCAATGTTATGGCAGCTTGTGAATCTGGACCTATGTTTTTGAGAGCAGTGAACTGTGAAGGGGATTTGAAAGACAGGTTCTTCATTTCTGACTTGCTCATTGATAGTATTTTGGAGATTGGTCCACAACATGTTGTCCAGGTAATCACTGATAATGCTAGCAATTGCAAAGCTGCTGGAGCTATTATTAATGCTAGATTTCCACACATATTTTGGACTCCATGTGTTGTGCATACACTAAACCTTGCTTTGAAGAACATATGCACACCAAGTTCCATTACTTCTAATAAGGTTGCTTATGATGCATGTAATTGGATTTCACAAGTTGCTGAGGATGTGTGGTTCATAAAGAATTTCATTATGAACCATGGTATGAGGTTGGCTATGTTTAATGAGCACTCCCACTTGAAGGTGTTATCCATTGCTGATACACGCTTTGCATCCATTGTTGTGATGCTTAAGAGATTTAGGAAGATCAAGCAATCTCTAGAACGGATGGTGATAAGTGATCAATGGGAAGCTTATAGAGATGATGATGTGACAAAAGCAAGGGCCGTGAAAGACATGATATTAGATGATGATGCTTGGGCAAAGATTGATTACATACTTGCCTTCACATTACCCATCTATGAGATGCTTAGGAGGCTAGGAGTGATACGGATGAGCCATGTCTTCACAAGGTTTATGAGTGGTGGGATGCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT

Protein Analysis

353

Amino Acids

40.28

Weight (kDa)

8.98

Isoelectric Point (pI)

41.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF659 PF04937 71 - 232 2.3e-46 Domain of unknown function (DUF659)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000421)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G08267
fragaria_vesca FvH4_2g14331 FvH4_2g16371 FvH4_2g26163 FvH4_3g42540 FvH4_4g02102 FvH4_4g12491 FvH4_4g35171 FvH4_5g06632 FvH4_5g06632 FvH4_5g06632 FvH4_5g08811 FvH4_5g08812 FvH4_5g23531 FvH4_6g10272 FvH4_6g40844 FvH4_7g16803 FvH4_7g16804
malus_domestica MD11G1099500.v1.1 MD17G1176800.v1.1
pyrus_communis pycom05g07840 pycom06g08730 pycom07g12010 pycom07g12020 pycom10g07270 pycom11g17470 pycom12g10610 pycom12g14240 pycom13g22040 pycom15g02440
rosa_chinensis RchiOBHm_Chr1g0371321 RchiOBHm_Chr2g0102701 RchiOBHm_Chr3g0465681 RchiOBHm_Chr4g0420941 RchiOBHm_Chr4g0434271 RchiOBHm_Chr4g0442721 RchiOBHm_Chr6g0262081 RchiOBHm_Chr6g0278171 RchiOBHm_Chr6g0294991 RchiOBHm_Chr6g0295001 RchiOBHm_Chr7g0205361 RchiOBHm_Chr7g0205371 RchiOBHm_Chr7g0223471
rosa_laevigata RLG00000005266
rosa_multiflora Rmu_sc0000493.1_g000033 Rmu_sc0000493.1_g000034 Rmu_sc0000507.1_g000007 Rmu_sc0000843.1_g000001 Rmu_sc0001075.1_g000033 Rmu_sc0002077.1_g000007 Rmu_sc0002077.1_g000008 Rmu_sc0002329.1_g000029 Rmu_sc0002539.1_g000077 Rmu_sc0002655.1_g000006 Rmu_sc0003127.1_g000020 Rmu_sc0003765.1_g000054 Rmu_sc0004368.1_g000023 Rmu_sc0004753.1_g000022 Rmu_sc0005297.1_g000014 Rmu_sc0007633.1_g000010 Rmu_sc0008164.1_g000005 Rmu_sc0008191.1_g000003 Rmu_sc0017900.1_g000005 Rmu_sc0022727.1_g000002
rosa_roxburghii Rroxscaffold_2G00079920 Rroxscaffold_3G00255890 Rroxscaffold_4G00295340 Rroxscaffold_4G00296360 Rroxscaffold_4G00299640 Rroxscaffold_6G00388210
rosa_rugosa Rorug02G0466700 Rorug04G0123200 Rorug05G0074800 Rorug07G0202900
rosa_samantha Rh1DG134700 Rh3CG159000 Rh4AG331000 Rh5AG521100 Rh5BG136400 Rh5DG127300 Rh5DG383100 Rh5DG386100 Rh5DG458000 Rh6CG450400 Rh7CG233800 Rh7DG407100
rosa_wichuraiana Rw1G004960 Rw1G005730 Rw1G006360 Rw1G017400 Rw2G013190 Rw2G022210 Rw2G029640 Rw5G020910 Rw5G036930 Rw6G016200 Rw7G018170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 171, 219
AccB7I CCANNNNNTGG 1 cut(s) 197
AciI CCGC 1 cut(s) 50
AcoI YGGCCR 1 cut(s) 206
AcsI RAATTY 1 cut(s) 709
AfiI CCNNNNNNNGG 2 cut(s) 197, 766
AflII CTTAAG 1 cut(s) 815
AflIII ACRYGT 1 cut(s) 487
AgeI ACCGGT 1 cut(s) 119
AgsI TTSAA 6 cut(s) 56, 67, 136, 427, 610, 766
AjnI CCWGG 3 cut(s) 196, 211, 495
AloI GAACNNNNNNTCC 2 cut(s) 683, 715
AluBI AGCT 5 cut(s) 289, 374, 530, 539, 878
AluI AGCT 5 cut(s) 289, 374, 530, 539, 878
Alw21I GWGCWC 1 cut(s) 756
AoxI GGCC 2 cut(s) 206, 909
ApeKI GCWGC 3 cut(s) 179, 371, 530
ApoI RAATTY 1 cut(s) 709
AseI ATTAAT 1 cut(s) 546
AsiGI ACCGGT 1 cut(s) 119
AspS9I GGNCC 5 cut(s) 47, 333, 386, 479, 909
AsuHPI GGTGA 1 cut(s) 868
AsuNHI GCTAGC 1 cut(s) 515
AvaII GGWCC 4 cut(s) 47, 333, 386, 479
BbsI GAAGAC 2 cut(s) 355, 1021
Bbv12I GWGCWC 1 cut(s) 756
BbvCI CCTCAGC 1 cut(s) 687
BbvI GCAGC 3 cut(s) 166, 383, 517
BccI CCATC 3 cut(s) 320, 847, 989
BceAI ACGGC 1 cut(s) 896
BciT130I CCWGG 3 cut(s) 198, 213, 497
BclI TGATCA 1 cut(s) 865
BfaI CTAG 5 cut(s) 78, 516, 552, 845, 1004
BfrI CTTAAG 1 cut(s) 815
BisI GCNGC 3 cut(s) 180, 372, 531
BlsI GCNGC 3 cut(s) 181, 373, 532
Bme1390I CCNGG 3 cut(s) 198, 213, 497
Bme18I GGWCC 4 cut(s) 47, 333, 386, 479
BmgT120I GGNCC 5 cut(s) 47, 333, 386, 479, 909
BmiI GGNNCC 2 cut(s) 21, 279
BmrFI CCNGG 3 cut(s) 198, 213, 497
BmsI GCATC 7 cut(s) 246, 649, 801, 806, 928, 981, 1044
BmtI GCTAGC 1 cut(s) 519
BpiI GAAGAC 2 cut(s) 355, 1021
BplI GAGNNNNNCTC 2 cut(s) 220, 252
BpmI CTGGAG 1 cut(s) 555
Bpu10I CCTNAGC 2 cut(s) 687, 995
BsaJI CCNNGG 1 cut(s) 724
BsaWI WCCGGW 1 cut(s) 119
Bsc4I CCNNNNNNNGG 2 cut(s) 197, 766
Bse118I RCCGGY 1 cut(s) 119
Bse3DI GCAATG 1 cut(s) 777
BseBI CCWGG 3 cut(s) 198, 213, 497
BseDI CCNNGG 1 cut(s) 724
BseGI GGATG 7 cut(s) 10, 261, 697, 797, 858, 1023, 1059
BseLI CCNNNNNNNGG 2 cut(s) 197, 766
BseMI GCAATG 1 cut(s) 777
BseMII CTCAG 1 cut(s) 678
BseXI GCAGC 3 cut(s) 166, 383, 517
BshFI GGCC 2 cut(s) 208, 911
BshTI ACCGGT 1 cut(s) 119
BsiHKAI GWGCWC 1 cut(s) 756
BsiSI CCGG 1 cut(s) 120
BslI CCNNNNNNNGG 2 cut(s) 197, 766
BsnI GGCC 2 cut(s) 208, 911
Bsp1286I GDGCHC 1 cut(s) 756
Bsp143I GATC 2 cut(s) 831, 865
Bsp19I CCATGG 1 cut(s) 724
BspACI CCGC 1 cut(s) 50
BspANI GGCC 2 cut(s) 208, 911
BspCNI CTCAG 1 cut(s) 679
BspLI GGNNCC 2 cut(s) 21, 279
BspOI GCTAGC 1 cut(s) 519
BspTI CTTAAG 1 cut(s) 815
BsrDI GCAATG 1 cut(s) 777
BsrFI RCCGGY 1 cut(s) 119
BssAI RCCGGY 1 cut(s) 119
BssECI CCNNGG 1 cut(s) 724
BssMI GATC 2 cut(s) 831, 865
BssT1I CCWWGG 1 cut(s) 724
Bst2UI CCWGG 3 cut(s) 198, 213, 497
Bst4CI ACNGT 1 cut(s) 413
Bst6I CTCTTC 2 cut(s) 23, 243
BstAFI CTTAAG 1 cut(s) 815
BstC8I GCNNGC 1 cut(s) 517
BstDEI CTNAG 2 cut(s) 687, 995
BstDSI CCRYGG 1 cut(s) 724
BstF5I GGATG 7 cut(s) 10, 261, 697, 797, 858, 1023, 1059
BstKTI GATC 2 cut(s) 834, 868
BstMBI GATC 2 cut(s) 831, 865
BstMWI GCNNNNNNNGC 4 cut(s) 295, 536, 659, 1000
BstNI CCWGG 3 cut(s) 198, 213, 497
BstNSI RCATGY 2 cut(s) 491, 666
BstSCI CCNGG 3 cut(s) 196, 211, 495
BstV1I GCAGC 3 cut(s) 166, 383, 517
BstV2I GAAGAC 2 cut(s) 355, 1021
BsuRI GGCC 2 cut(s) 208, 911
BtgI CCRYGG 1 cut(s) 724
BtsCI GGATG 7 cut(s) 10, 261, 697, 797, 858, 1023, 1059
BtsI GCAGTG 1 cut(s) 411
BtsIMutI CAGTG 2 cut(s) 411, 504
Cac8I GCNNGC 1 cut(s) 517
Cfr10I RCCGGY 1 cut(s) 119
Cfr13I GGNCC 5 cut(s) 47, 333, 386, 479, 909
CsiI ACCWGGT 1 cut(s) 211
CspAI ACCGGT 1 cut(s) 119
CviAII CATG 7 cut(s) 294, 488, 579, 663, 725, 922, 1025
DdeI CTNAG 2 cut(s) 687, 995
DpnI GATC 2 cut(s) 833, 867
DpnII GATC 2 cut(s) 831, 865
EaeI YGGCCR 1 cut(s) 206
Eam1104I CTCTTC 2 cut(s) 23, 243
EarI CTCTTC 2 cut(s) 23, 243
Eco130I CCWWGG 1 cut(s) 724
Eco47I GGWCC 4 cut(s) 47, 333, 386, 479
EcoRII CCWGG 3 cut(s) 196, 211, 495
EcoT14I CCWWGG 1 cut(s) 724
EcoT22I ATGCAT 1 cut(s) 664
ErhI CCWWGG 1 cut(s) 724
FaeI CATG 7 cut(s) 297, 491, 582, 666, 728, 925, 1028
FatI CATG 7 cut(s) 293, 487, 578, 662, 724, 921, 1024
FauNDI CATATG 1 cut(s) 617
FbaI TGATCA 1 cut(s) 865
Fnu4HI GCNGC 3 cut(s) 180, 372, 531
FokI GGATG 6 cut(s) 17, 268, 704, 784, 865, 1030
Fsp4HI GCNGC 3 cut(s) 180, 372, 531
FspBI CTAG 5 cut(s) 78, 516, 552, 845, 1004
GluI GCNGC 3 cut(s) 180, 372, 531
GsuI CTGGAG 1 cut(s) 555
HaeIII GGCC 2 cut(s) 208, 911
HapII CCGG 1 cut(s) 120
Hin1II CATG 7 cut(s) 297, 491, 582, 666, 728, 925, 1028
HindIII AAGCTT 1 cut(s) 876
HinfI GANTC 4 cut(s) 148, 338, 380, 574
HpaII CCGG 1 cut(s) 120
HphI GGTGA 1 cut(s) 868
Hpy166II GTNNAC 3 cut(s) 47, 409, 482
Hpy188I TCNGA 2 cut(s) 337, 448
Hpy188III TCNNGA 2 cut(s) 384, 845
Hpy8I GTNNAC 3 cut(s) 47, 409, 482
HpyAV CCTTC 4 cut(s) 28, 410, 760, 979
HpyCH4III ACNGT 1 cut(s) 413
HpyCH4V TGCA 6 cut(s) 259, 525, 589, 621, 662, 797
HpyF10VI GCNNNNNNNGC 4 cut(s) 295, 536, 659, 1000
HpyF3I CTNAG 2 cut(s) 687, 995
Hsp92II CATG 7 cut(s) 297, 491, 582, 666, 728, 925, 1028
Ksp22I TGATCA 1 cut(s) 865
Kzo9I GATC 2 cut(s) 831, 865
LmnI GCTCC 1 cut(s) 536
Lsp1109I GCAGC 3 cut(s) 166, 383, 517
LweI GCATC 7 cut(s) 246, 649, 801, 806, 928, 981, 1044
MabI ACCWGGT 1 cut(s) 211
MaeI CTAG 5 cut(s) 78, 516, 552, 845, 1004
MaeIII GTNAC 1 cut(s) 895
MalI GATC 2 cut(s) 833, 867
MboI GATC 2 cut(s) 831, 865
MboII GAAGA 8 cut(s) 40, 230, 280, 360, 430, 622, 841, 1021
MfeI CAATTG 2 cut(s) 86, 520
MhlI GDGCHC 1 cut(s) 756
MluCI AATT 5 cut(s) 86, 192, 520, 667, 709
MlyI GAGTC 1 cut(s) 568
MmeI TCCRAC 1 cut(s) 255
MnlI CCTC 5 cut(s) 10, 24, 682, 726, 993
Mph1103I ATGCAT 1 cut(s) 664
MseI TTAA 4 cut(s) 285, 546, 747, 816
MslI CAYNNNNRTG 1 cut(s) 806
MspCI CTTAAG 1 cut(s) 815
MspI CCGG 1 cut(s) 120
MspR9I CCNGG 3 cut(s) 198, 213, 497
MunI CAATTG 2 cut(s) 86, 520
MvaI CCWGG 3 cut(s) 198, 213, 497
MwoI GCNNNNNNNGC 4 cut(s) 295, 536, 659, 1000
NcoI CCATGG 1 cut(s) 724
NdeI CATATG 1 cut(s) 617
NdeII GATC 2 cut(s) 831, 865
NheI GCTAGC 1 cut(s) 515
NlaIII CATG 7 cut(s) 297, 491, 582, 666, 728, 925, 1028
NlaIV GGNNCC 2 cut(s) 21, 279
NmuCI GTSAC 1 cut(s) 895
NsiI ATGCAT 1 cut(s) 664
NspI RCATGY 2 cut(s) 491, 666
PciI ACATGT 1 cut(s) 487
PfeI GAWTC 3 cut(s) 148, 338, 380
PflMI CCANNNNNTGG 1 cut(s) 197
PinAI ACCGGT 1 cut(s) 119
PkrI GCNGC 3 cut(s) 181, 373, 532
PleI GAGTC 1 cut(s) 568
PpsI GAGTC 1 cut(s) 568
PscI ACATGT 1 cut(s) 487
PshBI ATTAAT 1 cut(s) 546
PsiI TTATAA 2 cut(s) 171, 219
Psp6I CCWGG 3 cut(s) 196, 211, 495
PspGI CCWGG 3 cut(s) 196, 211, 495
PspN4I GGNNCC 2 cut(s) 21, 279
PspPI GGNCC 5 cut(s) 47, 333, 386, 479, 909
PsrI GAACNNNNNNTAC 1 cut(s) 35
RseI CAYNNNNRTG 1 cut(s) 806
SaqAI TTAA 4 cut(s) 285, 546, 747, 816
SatI GCNGC 3 cut(s) 180, 372, 531
Sau3AI GATC 2 cut(s) 831, 865
Sau96I GGNCC 5 cut(s) 47, 333, 386, 479, 909
SchI GAGTC 1 cut(s) 568
ScrFI CCNGG 3 cut(s) 198, 213, 497
SduI GDGCHC 1 cut(s) 756
SexAI ACCWGGT 1 cut(s) 211
SfaNI GCATC 7 cut(s) 246, 649, 801, 806, 928, 981, 1044
SinI GGWCC 4 cut(s) 47, 333, 386, 479
SmiMI CAYNNNNRTG 1 cut(s) 806
SmlI CTYRAG 1 cut(s) 815
SmoI CTYRAG 1 cut(s) 815
Sse9I AATT 5 cut(s) 86, 192, 520, 667, 709
SsiI CCGC 1 cut(s) 50
SspMI CTAG 5 cut(s) 78, 516, 552, 845, 1004
StyD4I CCNGG 3 cut(s) 196, 211, 495
StyI CCWWGG 1 cut(s) 724
TaaI ACNGT 1 cut(s) 413
TasI AATT 5 cut(s) 86, 192, 520, 667, 709
TfiI GAWTC 3 cut(s) 148, 338, 380
Tru1I TTAA 4 cut(s) 285, 546, 747, 816
Tru9I TTAA 4 cut(s) 285, 546, 747, 816
TscAI CASTG 2 cut(s) 411, 511
TseFI GTSAC 1 cut(s) 895
TseI GCWGC 3 cut(s) 179, 371, 530
Tsp45I GTSAC 1 cut(s) 895
TspDTI ATGAA 5 cut(s) 21, 430, 691, 703, 734
TspGWI ACGGA 2 cut(s) 865, 1030
TspRI CASTG 2 cut(s) 411, 511
Van91I CCANNNNNTGG 1 cut(s) 197
Vha464I CTTAAG 1 cut(s) 815
VpaK11BI GGWCC 4 cut(s) 47, 333, 386, 479
VspI ATTAAT 1 cut(s) 546
XapI RAATTY 1 cut(s) 709
XbaI TCTAGA 1 cut(s) 844
XceI RCATGY 2 cut(s) 491, 666
XcmI CCANNNNNNNNNTGG 1 cut(s) 567
XspI CTAG 5 cut(s) 78, 516, 552, 845, 1004
Zsp2I ATGCAT 1 cut(s) 664
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.