Encoded by
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DUF659 | PF04937 | 162 - 313 | 3.5e-42 | Domain of unknown function (DUF659) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 477 |
| AccII | CGCG | 1 cut(s) | 320 |
| AciI | CCGC | 2 cut(s) | 318, 1989 |
| AclWI | GGATC | 4 cut(s) | 760, 1553, 1836, 1849 |
| AcoI | YGGCCR | 2 cut(s) | 975, 1990 |
| AcsI | RAATTY | 7 cut(s) | 4, 280, 358, 402, 918, 1685, 1964 |
| AfaI | GTAC | 3 cut(s) | 154, 1090, 1343 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 704, 1475, 1940 |
| AflIII | ACRYGT | 1 cut(s) | 336 |
| AjnI | CCWGG | 3 cut(s) | 160, 1561, 1852 |
| AluBI | AGCT | 7 cut(s) | 248, 452, 551, 662, 901, 1526, 1782 |
| AluI | AGCT | 7 cut(s) | 248, 452, 551, 662, 901, 1526, 1782 |
| Alw21I | GWGCWC | 2 cut(s) | 328, 1380 |
| Alw26I | GTCTC | 2 cut(s) | 852, 2012 |
| AlwI | GGATC | 4 cut(s) | 760, 1553, 1836, 1849 |
| Ama87I | CYCGRG | 1 cut(s) | 1151 |
| AoxI | GGCC | 3 cut(s) | 975, 1942, 1990 |
| ApeKI | GCWGC | 3 cut(s) | 298, 644, 788 |
| ApoI | RAATTY | 7 cut(s) | 4, 280, 358, 402, 918, 1685, 1964 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1949, 1981 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1353 |
| AspA2I | CCTAGG | 1 cut(s) | 1939 |
| AspLEI | GCGC | 2 cut(s) | 55, 395 |
| AspS9I | GGNCC | 1 cut(s) | 1332 |
| AsuC2I | CCSGG | 3 cut(s) | 69, 1336, 1476 |
| AsuHPI | GGTGA | 3 cut(s) | 388, 719, 1289 |
| AsuNHI | GCTAGC | 1 cut(s) | 1918 |
| AvaI | CYCGRG | 1 cut(s) | 1151 |
| AvaII | GGWCC | 1 cut(s) | 1332 |
| AvrII | CCTAGG | 1 cut(s) | 1939 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1760, 1793 |
| BalI | TGGCCA | 1 cut(s) | 977 |
| BamHI | GGATCC | 1 cut(s) | 1841 |
| BbsI | GAAGAC | 1 cut(s) | 1130 |
| Bbv12I | GWGCWC | 2 cut(s) | 328, 1380 |
| BbvI | GCAGC | 3 cut(s) | 310, 631, 800 |
| BccI | CCATC | 8 cut(s) | 493, 593, 597, 1198, 1250, 1256, 1288, 1753 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1827, 1861 |
| BciT130I | CCWGG | 3 cut(s) | 162, 1563, 1854 |
| BciVI | GTATCC | 2 cut(s) | 687, 1860 |
| BcnI | CCSGG | 3 cut(s) | 69, 1336, 1476 |
| BcoDI | GTCTC | 2 cut(s) | 852, 2012 |
| BfaI | CTAG | 4 cut(s) | 1026, 1082, 1919, 1940 |
| BfmI | CTRYAG | 1 cut(s) | 1209 |
| BfuI | GTATCC | 2 cut(s) | 687, 1860 |
| BisI | GCNGC | 4 cut(s) | 299, 645, 789, 1990 |
| BlnI | CCTAGG | 1 cut(s) | 1939 |
| BlsI | GCNGC | 4 cut(s) | 300, 646, 790, 1991 |
| Bme1390I | CCNGG | 6 cut(s) | 69, 162, 1336, 1476, 1563, 1854 |
| Bme18I | GGWCC | 1 cut(s) | 1332 |
| BmeT110I | CYCGRG | 1 cut(s) | 1151 |
| BmgT120I | GGNCC | 1 cut(s) | 1332 |
| BmiI | GGNNCC | 2 cut(s) | 483, 1843 |
| BmrFI | CCNGG | 6 cut(s) | 69, 162, 1336, 1476, 1563, 1854 |
| BmsI | GCATC | 2 cut(s) | 1043, 1123 |
| BmtI | GCTAGC | 1 cut(s) | 1922 |
| BpiI | GAAGAC | 1 cut(s) | 1130 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 183, 215, 1443, 1475 |
| BpmI | CTGGAG | 1 cut(s) | 752 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1924 |
| BpuEI | CTTGAG | 2 cut(s) | 313, 663 |
| BpuMI | CCSGG | 3 cut(s) | 69, 1336, 1476 |
| BsaAI | YACGTR | 1 cut(s) | 1583 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1033 |
| BsaI | GGTCTC | 1 cut(s) | 852 |
| BsaJI | CCNNGG | 3 cut(s) | 160, 1913, 1939 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 704, 1475, 1940 |
| Bse1I | ACTGG | 3 cut(s) | 911, 1173, 1724 |
| Bse3DI | GCAATG | 2 cut(s) | 97, 109 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1033 |
| BseBI | CCWGG | 3 cut(s) | 162, 1563, 1854 |
| BseDI | CCNNGG | 3 cut(s) | 160, 1913, 1939 |
| BseGI | GGATG | 2 cut(s) | 608, 1299 |
| BseJI | GATNNNNATC | 1 cut(s) | 1033 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 704, 1475, 1940 |
| BseMI | GCAATG | 2 cut(s) | 97, 109 |
| BseMII | CTCAG | 2 cut(s) | 1474, 1995 |
| BseNI | ACTGG | 3 cut(s) | 911, 1173, 1724 |
| BseRI | GAGGAG | 2 cut(s) | 672, 2038 |
| BseXI | GCAGC | 3 cut(s) | 310, 631, 800 |
| BseYI | CCCAGC | 2 cut(s) | 806, 1136 |
| Bsh1236I | CGCG | 1 cut(s) | 320 |
| BshFI | GGCC | 3 cut(s) | 977, 1944, 1992 |
| BsiHKAI | GWGCWC | 2 cut(s) | 328, 1380 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1151 |
| BsiSI | CCGG | 3 cut(s) | 68, 1335, 1475 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 704, 1475, 1940 |
| BsmAI | GTCTC | 2 cut(s) | 852, 2012 |
| BsmBI | CGTCTC | 1 cut(s) | 2012 |
| BsmI | GAATGC | 1 cut(s) | 132 |
| BsnI | GGCC | 3 cut(s) | 977, 1944, 1992 |
| Bso31I | GGTCTC | 1 cut(s) | 852 |
| BsoBI | CYCGRG | 1 cut(s) | 1151 |
| Bsp1286I | GDGCHC | 2 cut(s) | 328, 1380 |
| Bsp143I | GATC | 4 cut(s) | 752, 1558, 1661, 1841 |
| BspACI | CCGC | 2 cut(s) | 318, 1989 |
| BspANI | GGCC | 3 cut(s) | 977, 1944, 1992 |
| BspCNI | CTCAG | 2 cut(s) | 1473, 1994 |
| BspFNI | CGCG | 1 cut(s) | 320 |
| BspHI | TCATGA | 1 cut(s) | 436 |
| BspLI | GGNNCC | 2 cut(s) | 483, 1843 |
| BspOI | GCTAGC | 1 cut(s) | 1922 |
| BspPI | GGATC | 4 cut(s) | 760, 1553, 1836, 1849 |
| BspTNI | GGTCTC | 1 cut(s) | 852 |
| BsrDI | GCAATG | 2 cut(s) | 97, 109 |
| BsrI | ACTGG | 3 cut(s) | 911, 1173, 1724 |
| BssECI | CCNNGG | 3 cut(s) | 160, 1913, 1939 |
| BssMI | GATC | 4 cut(s) | 752, 1558, 1661, 1841 |
| BssT1I | CCWWGG | 2 cut(s) | 1913, 1939 |
| Bst2UI | CCWGG | 3 cut(s) | 162, 1563, 1854 |
| Bst4CI | ACNGT | 5 cut(s) | 581, 653, 797, 1093, 1810 |
| Bst6I | CTCTTC | 3 cut(s) | 738, 1652, 1732 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 99 |
| BstBAI | YACGTR | 1 cut(s) | 1583 |
| BstC8I | GCNNGC | 2 cut(s) | 1920, 1987 |
| BstDEI | CTNAG | 3 cut(s) | 1460, 1924, 1981 |
| BstF5I | GGATG | 2 cut(s) | 608, 1299 |
| BstFNI | CGCG | 1 cut(s) | 320 |
| BstHHI | GCGC | 2 cut(s) | 55, 395 |
| BstKTI | GATC | 4 cut(s) | 755, 1561, 1664, 1844 |
| BstMAI | GTCTC | 2 cut(s) | 852, 2012 |
| BstMBI | GATC | 4 cut(s) | 752, 1558, 1661, 1841 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 99, 1835 |
| BstNI | CCWGG | 3 cut(s) | 162, 1563, 1854 |
| BstNSI | RCATGY | 3 cut(s) | 93, 340, 971 |
| BstSCI | CCNGG | 6 cut(s) | 67, 160, 1334, 1474, 1561, 1852 |
| BstSFI | CTRYAG | 1 cut(s) | 1209 |
| BstSNI | TACGTA | 1 cut(s) | 1583 |
| BstUI | CGCG | 1 cut(s) | 320 |
| BstV1I | GCAGC | 3 cut(s) | 310, 631, 800 |
| BstV2I | GAAGAC | 1 cut(s) | 1130 |
| BstX2I | RGATCY | 2 cut(s) | 1558, 1841 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1418, 1967 |
| BstYI | RGATCY | 2 cut(s) | 1558, 1841 |
| BsuI | GTATCC | 2 cut(s) | 687, 1860 |
| BsuRI | GGCC | 3 cut(s) | 977, 1944, 1992 |
| BtgZI | GCGATG | 1 cut(s) | 1275 |
| BtsCI | GGATG | 2 cut(s) | 608, 1299 |
| BtsIMutI | CAGTG | 2 cut(s) | 777, 1166 |
| Cac8I | GCNNGC | 2 cut(s) | 1920, 1987 |
| CciI | TCATGA | 1 cut(s) | 436 |
| CfoI | GCGC | 2 cut(s) | 55, 395 |
| Cfr13I | GGNCC | 1 cut(s) | 1332 |
| Csp6I | GTAC | 3 cut(s) | 153, 1089, 1342 |
| CviAII | CATG | 7 cut(s) | 90, 337, 437, 567, 968, 979, 1531 |
| CviQI | GTAC | 3 cut(s) | 153, 1089, 1342 |
| DdeI | CTNAG | 3 cut(s) | 1460, 1924, 1981 |
| DpnI | GATC | 4 cut(s) | 754, 1560, 1663, 1843 |
| DpnII | GATC | 4 cut(s) | 752, 1558, 1661, 1841 |
| DraI | TTTAAA | 1 cut(s) | 883 |
| EaeI | YGGCCR | 2 cut(s) | 975, 1990 |
| Eam1104I | CTCTTC | 3 cut(s) | 738, 1652, 1732 |
| EarI | CTCTTC | 3 cut(s) | 738, 1652, 1732 |
| Eco105I | TACGTA | 1 cut(s) | 1583 |
| Eco130I | CCWWGG | 2 cut(s) | 1913, 1939 |
| Eco147I | AGGCCT | 1 cut(s) | 1944 |
| Eco31I | GGTCTC | 1 cut(s) | 852 |
| Eco47I | GGWCC | 1 cut(s) | 1332 |
| Eco88I | CYCGRG | 1 cut(s) | 1151 |
| EcoRI | GAATTC | 2 cut(s) | 4, 402 |
| EcoRII | CCWGG | 3 cut(s) | 160, 1561, 1852 |
| EcoT14I | CCWWGG | 2 cut(s) | 1913, 1939 |
| ErhI | CCWWGG | 2 cut(s) | 1913, 1939 |
| Esp3I | CGTCTC | 1 cut(s) | 2012 |
| FaeI | CATG | 7 cut(s) | 93, 340, 440, 570, 971, 982, 1534 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 493, 525 |
| FatI | CATG | 7 cut(s) | 89, 336, 436, 566, 967, 978, 1530 |
| Fnu4HI | GCNGC | 4 cut(s) | 299, 645, 789, 1990 |
| FokI | GGATG | 2 cut(s) | 615, 1306 |
| Fsp4HI | GCNGC | 4 cut(s) | 299, 645, 789, 1990 |
| FspBI | CTAG | 4 cut(s) | 1026, 1082, 1919, 1940 |
| GlaI | GCGC | 2 cut(s) | 54, 394 |
| GluI | GCNGC | 4 cut(s) | 299, 645, 789, 1990 |
| GsaI | CCCAGC | 2 cut(s) | 810, 1140 |
| GsuI | CTGGAG | 1 cut(s) | 752 |
| HaeIII | GGCC | 3 cut(s) | 977, 1944, 1992 |
| HapII | CCGG | 3 cut(s) | 68, 1335, 1475 |
| HhaI | GCGC | 2 cut(s) | 55, 395 |
| Hin1II | CATG | 7 cut(s) | 93, 340, 440, 570, 971, 982, 1534 |
| Hin6I | GCGC | 2 cut(s) | 53, 393 |
| HinP1I | GCGC | 2 cut(s) | 53, 393 |
| HinfI | GANTC | 3 cut(s) | 178, 465, 871 |
| HpaII | CCGG | 3 cut(s) | 68, 1335, 1475 |
| HphI | GGTGA | 3 cut(s) | 388, 719, 1289 |
| Hpy166II | GTNNAC | 2 cut(s) | 527, 573 |
| Hpy188I | TCNGA | 9 cut(s) | 10, 175, 470, 598, 986, 1348, 1657, 1673, 2005 |
| Hpy8I | GTNNAC | 2 cut(s) | 527, 573 |
| Hpy99I | CGWCG | 1 cut(s) | 186 |
| HpyAV | CCTTC | 2 cut(s) | 367, 1651 |
| HpyCH4III | ACNGT | 5 cut(s) | 581, 653, 797, 1093, 1810 |
| HpyCH4IV | ACGT | 2 cut(s) | 612, 1582 |
| HpyCH4V | TGCA | 9 cut(s) | 93, 102, 647, 737, 788, 1034, 1071, 1679, 2015 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 99, 1835 |
| HpyF3I | CTNAG | 3 cut(s) | 1460, 1924, 1981 |
| HpySE526I | ACGT | 2 cut(s) | 612, 1582 |
| Hsp92II | CATG | 7 cut(s) | 93, 340, 440, 570, 971, 982, 1534 |
| HspAI | GCGC | 2 cut(s) | 53, 393 |
| Kzo9I | GATC | 4 cut(s) | 752, 1558, 1661, 1841 |
| LmnI | GCTCC | 6 cut(s) | 50, 74, 487, 556, 659, 1383 |
| Lsp1109I | GCAGC | 3 cut(s) | 310, 631, 800 |
| LweI | GCATC | 2 cut(s) | 1043, 1123 |
| MaeI | CTAG | 4 cut(s) | 1026, 1082, 1919, 1940 |
| MaeII | ACGT | 2 cut(s) | 612, 1582 |
| MaeIII | GTNAC | 1 cut(s) | 775 |
| MalI | GATC | 4 cut(s) | 754, 1560, 1663, 1843 |
| MboI | GATC | 4 cut(s) | 752, 1558, 1661, 1841 |
| MboII | GAAGA | 7 cut(s) | 258, 755, 1091, 1135, 1568, 1639, 1719 |
| MfeI | CAATTG | 2 cut(s) | 738, 1994 |
| MflI | RGATCY | 2 cut(s) | 1558, 1841 |
| MhlI | GDGCHC | 2 cut(s) | 328, 1380 |
| MlsI | TGGCCA | 1 cut(s) | 977 |
| MluNI | TGGCCA | 1 cut(s) | 977 |
| MmeI | TCCRAC | 2 cut(s) | 1399, 1983 |
| Mox20I | TGGCCA | 1 cut(s) | 977 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1353 |
| MscI | TGGCCA | 1 cut(s) | 977 |
| MseI | TTAA | 7 cut(s) | 411, 558, 882, 945, 1245, 1484, 1542 |
| MslI | CAYNNNNRTG | 3 cut(s) | 102, 435, 966 |
| Msp20I | TGGCCA | 1 cut(s) | 977 |
| MspI | CCGG | 3 cut(s) | 68, 1335, 1475 |
| MspR9I | CCNGG | 6 cut(s) | 69, 162, 1336, 1476, 1563, 1854 |
| MunI | CAATTG | 2 cut(s) | 738, 1994 |
| Mva1269I | GAATGC | 1 cut(s) | 132 |
| MvaI | CCWGG | 3 cut(s) | 162, 1563, 1854 |
| MvnI | CGCG | 1 cut(s) | 320 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 99, 1835 |
| NciI | CCSGG | 3 cut(s) | 69, 1336, 1476 |
| NdeII | GATC | 4 cut(s) | 752, 1558, 1661, 1841 |
| NheI | GCTAGC | 1 cut(s) | 1918 |
| NlaIII | CATG | 7 cut(s) | 93, 340, 440, 570, 971, 982, 1534 |
| NlaIV | GGNNCC | 2 cut(s) | 483, 1843 |
| NmuCI | GTSAC | 1 cut(s) | 775 |
| NspI | RCATGY | 3 cut(s) | 93, 340, 971 |
| PagI | TCATGA | 1 cut(s) | 436 |
| PceI | AGGCCT | 1 cut(s) | 1944 |
| PciI | ACATGT | 1 cut(s) | 336 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 187 |
| PctI | GAATGC | 1 cut(s) | 132 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1353 |
| PfeI | GAWTC | 3 cut(s) | 178, 465, 871 |
| PfoI | TCCNGGA | 2 cut(s) | 1561, 1852 |
| PkrI | GCNGC | 4 cut(s) | 300, 646, 790, 1991 |
| Ppu21I | YACGTR | 1 cut(s) | 1583 |
| PscI | ACATGT | 1 cut(s) | 336 |
| PsiI | TTATAA | 1 cut(s) | 477 |
| Psp6I | CCWGG | 3 cut(s) | 160, 1561, 1852 |
| PspFI | CCCAGC | 2 cut(s) | 806, 1136 |
| PspGI | CCWGG | 3 cut(s) | 160, 1561, 1852 |
| PspN4I | GGNNCC | 2 cut(s) | 483, 1843 |
| PspPI | GGNCC | 1 cut(s) | 1332 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1752, 1784 |
| PsuI | RGATCY | 2 cut(s) | 1558, 1841 |
| RsaI | GTAC | 3 cut(s) | 154, 1090, 1343 |
| RsaNI | GTAC | 3 cut(s) | 153, 1089, 1342 |
| RseI | CAYNNNNRTG | 3 cut(s) | 102, 435, 966 |
| SaqAI | TTAA | 7 cut(s) | 411, 558, 882, 945, 1245, 1484, 1542 |
| SatI | GCNGC | 4 cut(s) | 299, 645, 789, 1990 |
| Sau3AI | GATC | 4 cut(s) | 752, 1558, 1661, 1841 |
| Sau96I | GGNCC | 1 cut(s) | 1332 |
| ScrFI | CCNGG | 6 cut(s) | 69, 162, 1336, 1476, 1563, 1854 |
| SduI | GDGCHC | 2 cut(s) | 328, 1380 |
| SfaNI | GCATC | 2 cut(s) | 1043, 1123 |
| SfcI | CTRYAG | 1 cut(s) | 1209 |
| SinI | GGWCC | 1 cut(s) | 1332 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 102, 435, 966 |
| SmlI | CTYRAG | 2 cut(s) | 292, 678 |
| SmoI | CTYRAG | 2 cut(s) | 292, 678 |
| SnaBI | TACGTA | 1 cut(s) | 1583 |
| SseBI | AGGCCT | 1 cut(s) | 1944 |
| SsiI | CCGC | 2 cut(s) | 318, 1989 |
| SspI | AATATT | 2 cut(s) | 928, 1250 |
| SspMI | CTAG | 4 cut(s) | 1026, 1082, 1919, 1940 |
| StuI | AGGCCT | 1 cut(s) | 1944 |
| StyD4I | CCNGG | 6 cut(s) | 67, 160, 1334, 1474, 1561, 1852 |
| StyI | CCWWGG | 2 cut(s) | 1913, 1939 |
| TaaI | ACNGT | 5 cut(s) | 581, 653, 797, 1093, 1810 |
| TaiI | ACGT | 2 cut(s) | 615, 1585 |
| TaqI | TCGA | 6 cut(s) | 184, 190, 587, 995, 1365, 1489 |
| TatI | WGTACW | 1 cut(s) | 1341 |
| TauI | GCSGC | 1 cut(s) | 1992 |
| TfiI | GAWTC | 3 cut(s) | 178, 465, 871 |
| Tru1I | TTAA | 7 cut(s) | 411, 558, 882, 945, 1245, 1484, 1542 |
| Tru9I | TTAA | 7 cut(s) | 411, 558, 882, 945, 1245, 1484, 1542 |
| TscAI | CASTG | 2 cut(s) | 784, 1173 |
| TseFI | GTSAC | 1 cut(s) | 775 |
| TseI | GCWGC | 3 cut(s) | 298, 644, 788 |
| Tsp45I | GTSAC | 1 cut(s) | 775 |
| TspRI | CASTG | 2 cut(s) | 784, 1173 |
| VpaK11BI | GGWCC | 1 cut(s) | 1332 |
| XapI | RAATTY | 7 cut(s) | 4, 280, 358, 402, 918, 1685, 1964 |
| XceI | RCATGY | 3 cut(s) | 93, 340, 971 |
| XmaJI | CCTAGG | 1 cut(s) | 1939 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1353 |
| XspI | CTAG | 4 cut(s) | 1026, 1082, 1919, 1940 |