Rmu_sc0004368.1_g000023

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004368.1
OG0000421
Physical Location & Seq
Forward (+)
104082 .. 104624
543 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004368.1_g000023.1.cds

Sequence Viewer

Length: 543 bp
atgaatcaaatatcagaaaatttattctcaaccttgttctatttgactgtttcttcatctttgaaaagctcaacaatcttgaggcaacaaccacaaaaatcgaccgcaggtgctcttgatgacatgttcaagattatggaaaaaaatagtgttgatatgaaggtgatgagaggattgtgcgctaatggaattccgtttaatgtgttaagaaatccccaatttcatgagatgatttcagctataaatcatggacccaggggttataaggctccatcttctgaaaaagcaagaactactttgcttgatgagtgtaaacgaagtctggaaaaagaattagctcctgttaaaggtacatggtttactcacggtgtttcaattgtttcagatggatggtctaacatgaagcatgagccacttatcaacattattgctgcaaatagtagagaagcgttgtttctttatgctcaagatttttctgggatacaaaaaactggtgaagtgattgctgactttatgcttactgcaattgaagatgtgggatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT

Protein Analysis

180

Amino Acids

20.0

Weight (kDa)

6.91

Isoelectric Point (pI)

35.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000421)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G08267
fragaria_vesca FvH4_2g14331 FvH4_2g16371 FvH4_2g26163 FvH4_3g42540 FvH4_4g02102 FvH4_4g12491 FvH4_4g35171 FvH4_5g06632 FvH4_5g06632 FvH4_5g06632 FvH4_5g08811 FvH4_5g08812 FvH4_5g23531 FvH4_6g10272 FvH4_6g40844 FvH4_7g16803 FvH4_7g16804
malus_domestica MD11G1099500.v1.1 MD17G1176800.v1.1
pyrus_communis pycom05g07840 pycom06g08730 pycom07g12010 pycom07g12020 pycom10g07270 pycom11g17470 pycom12g10610 pycom12g14240 pycom13g22040 pycom15g02440
rosa_chinensis RchiOBHm_Chr1g0371321 RchiOBHm_Chr2g0102701 RchiOBHm_Chr3g0465681 RchiOBHm_Chr4g0420941 RchiOBHm_Chr4g0434271 RchiOBHm_Chr4g0442721 RchiOBHm_Chr6g0262081 RchiOBHm_Chr6g0278171 RchiOBHm_Chr6g0294991 RchiOBHm_Chr6g0295001 RchiOBHm_Chr7g0205361 RchiOBHm_Chr7g0205371 RchiOBHm_Chr7g0223471
rosa_laevigata RLG00000005266
rosa_multiflora Rmu_sc0000493.1_g000033 Rmu_sc0000493.1_g000034 Rmu_sc0000507.1_g000007 Rmu_sc0000843.1_g000001 Rmu_sc0001075.1_g000033 Rmu_sc0002077.1_g000007 Rmu_sc0002077.1_g000008 Rmu_sc0002329.1_g000029 Rmu_sc0002539.1_g000077 Rmu_sc0002655.1_g000006 Rmu_sc0003127.1_g000020 Rmu_sc0003765.1_g000054 Rmu_sc0004368.1_g000023 Rmu_sc0004753.1_g000022 Rmu_sc0005297.1_g000014 Rmu_sc0007633.1_g000010 Rmu_sc0008164.1_g000005 Rmu_sc0008191.1_g000003 Rmu_sc0017900.1_g000005 Rmu_sc0022727.1_g000002
rosa_roxburghii Rroxscaffold_2G00079920 Rroxscaffold_3G00255890 Rroxscaffold_4G00295340 Rroxscaffold_4G00296360 Rroxscaffold_4G00299640 Rroxscaffold_6G00388210
rosa_rugosa Rorug02G0466700 Rorug04G0123200 Rorug05G0074800 Rorug07G0202900
rosa_samantha Rh1DG134700 Rh3CG159000 Rh4AG331000 Rh5AG521100 Rh5BG136400 Rh5DG127300 Rh5DG383100 Rh5DG386100 Rh5DG458000 Rh6CG450400 Rh7CG233800 Rh7DG407100
rosa_wichuraiana Rw1G004960 Rw1G005730 Rw1G006360 Rw1G017400 Rw2G013190 Rw2G022210 Rw2G029640 Rw5G020910 Rw5G036930 Rw6G016200 Rw7G018170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 264
AarI CACCTGC 1 cut(s) 98
Acc36I ACCTGC 1 cut(s) 98
AciI CCGC 1 cut(s) 105
AcsI RAATTY 2 cut(s) 19, 189
AfaI GTAC 1 cut(s) 352
AfiI CCNNNNNNNGG 1 cut(s) 347
AflIII ACRYGT 1 cut(s) 123
AgsI TTSAA 4 cut(s) 64, 130, 375, 530
AjnI CCWGG 1 cut(s) 254
AluBI AGCT 3 cut(s) 69, 239, 338
AluI AGCT 3 cut(s) 69, 239, 338
Alw21I GWGCWC 1 cut(s) 115
ApeKI GCWGC 1 cut(s) 431
ApoI RAATTY 2 cut(s) 19, 189
AspLEI GCGC 1 cut(s) 182
AspS9I GGNCC 1 cut(s) 251
AsuHPI GGTGA 2 cut(s) 175, 506
AvaII GGWCC 1 cut(s) 251
Bbv12I GWGCWC 1 cut(s) 115
BbvI GCAGC 1 cut(s) 418
BccI CCATC 3 cut(s) 280, 380, 384
BciT130I CCWGG 1 cut(s) 256
BciVI GTATCC 1 cut(s) 474
BfuAI ACCTGC 1 cut(s) 98
BfuI GTATCC 1 cut(s) 474
BisI GCNGC 1 cut(s) 432
BlsI GCNGC 1 cut(s) 433
Bme1390I CCNGG 1 cut(s) 256
Bme18I GGWCC 1 cut(s) 251
BmgT120I GGNCC 1 cut(s) 251
BmiI GGNNCC 2 cut(s) 253, 270
BmrFI CCNGG 1 cut(s) 256
BpuEI CTTGAG 2 cut(s) 100, 450
BsaJI CCNNGG 2 cut(s) 254, 255
Bsc4I CCNNNNNNNGG 1 cut(s) 347
Bse1I ACTGG 1 cut(s) 496
BseBI CCWGG 1 cut(s) 256
BseDI CCNNGG 2 cut(s) 254, 255
BseGI GGATG 1 cut(s) 395
BseLI CCNNNNNNNGG 1 cut(s) 347
BseNI ACTGG 1 cut(s) 496
BseXI GCAGC 1 cut(s) 418
Bsh1285I CGRYCG 1 cut(s) 105
BsiEI CGRYCG 1 cut(s) 105
BsiHKAI GWGCWC 1 cut(s) 115
BslI CCNNNNNNNGG 1 cut(s) 347
Bsp1286I GDGCHC 1 cut(s) 115
BspACI CCGC 1 cut(s) 105
BspHI TCATGA 1 cut(s) 223
BspLI GGNNCC 2 cut(s) 253, 270
BspMI ACCTGC 1 cut(s) 98
BsrI ACTGG 1 cut(s) 496
BssECI CCNNGG 2 cut(s) 254, 255
Bst2UI CCWGG 1 cut(s) 256
Bst4CI ACNGT 2 cut(s) 49, 368
BstENI CCTNNNNNAGG 1 cut(s) 345
BstF5I GGATG 1 cut(s) 395
BstHHI GCGC 1 cut(s) 182
BstMCI CGRYCG 1 cut(s) 105
BstNI CCWGG 1 cut(s) 256
BstNSI RCATGY 1 cut(s) 127
BstSCI CCNGG 1 cut(s) 254
BstV1I GCAGC 1 cut(s) 418
BsuI GTATCC 1 cut(s) 474
BtsCI GGATG 1 cut(s) 395
BveI ACCTGC 1 cut(s) 98
CciI TCATGA 1 cut(s) 223
CfoI GCGC 1 cut(s) 182
Cfr13I GGNCC 1 cut(s) 251
Csp6I GTAC 1 cut(s) 351
CviAII CATG 6 cut(s) 124, 224, 248, 354, 400, 407
CviJI RGCY 5 cut(s) 69, 239, 269, 338, 412
CviKI_1 RGCY 5 cut(s) 69, 239, 269, 338, 412
CviQI GTAC 1 cut(s) 351
Eco47I GGWCC 1 cut(s) 251
EcoNI CCTNNNNNAGG 1 cut(s) 345
EcoRI GAATTC 1 cut(s) 189
EcoRII CCWGG 1 cut(s) 254
FaeI CATG 6 cut(s) 127, 227, 251, 357, 403, 410
FalI AAGNNNNNCTT 2 cut(s) 280, 312
FatI CATG 6 cut(s) 123, 223, 247, 353, 399, 406
Fnu4HI GCNGC 1 cut(s) 432
FokI GGATG 1 cut(s) 402
Fsp4HI GCNGC 1 cut(s) 432
GlaI GCGC 1 cut(s) 181
GluI GCNGC 1 cut(s) 432
HhaI GCGC 1 cut(s) 182
Hin1II CATG 6 cut(s) 127, 227, 251, 357, 403, 410
Hin6I GCGC 1 cut(s) 180
HinP1I GCGC 1 cut(s) 180
HinfI GANTC 1 cut(s) 4
HphI GGTGA 2 cut(s) 175, 506
Hpy166II GTNNAC 2 cut(s) 314, 360
Hpy188I TCNGA 3 cut(s) 16, 280, 385
Hpy188III TCNNGA 6 cut(s) 79, 116, 130, 224, 323, 467
Hpy8I GTNNAC 2 cut(s) 314, 360
HpyAV CCTTC 1 cut(s) 154
HpyCH4III ACNGT 2 cut(s) 49, 368
HpyCH4V TGCA 2 cut(s) 434, 524
Hsp92II CATG 6 cut(s) 127, 227, 251, 357, 403, 410
HspAI GCGC 1 cut(s) 180
LmnI GCTCC 2 cut(s) 274, 343
LpnPI CCDG 7 cut(s) 93, 241, 268, 308, 354, 462, 477
Lsp1109I GCAGC 1 cut(s) 418
MboII GAAGA 3 cut(s) 45, 267, 542
MfeI CAATTG 2 cut(s) 375, 525
MhlI GDGCHC 1 cut(s) 115
MluCI AATT 6 cut(s) 19, 189, 218, 332, 375, 525
MnlI CCTC 2 cut(s) 75, 164
MseI TTAA 3 cut(s) 198, 206, 345
MspR9I CCNGG 1 cut(s) 256
MunI CAATTG 2 cut(s) 375, 525
MvaI CCWGG 1 cut(s) 256
NlaIII CATG 6 cut(s) 127, 227, 251, 357, 403, 410
NlaIV GGNNCC 2 cut(s) 253, 270
NspI RCATGY 1 cut(s) 127
PagI TCATGA 1 cut(s) 223
PaqCI CACCTGC 1 cut(s) 98
PasI CCCWGGG 1 cut(s) 255
PciI ACATGT 1 cut(s) 123
PfeI GAWTC 1 cut(s) 4
PkrI GCNGC 1 cut(s) 433
PscI ACATGT 1 cut(s) 123
PsiI TTATAA 1 cut(s) 264
Psp6I CCWGG 1 cut(s) 254
PspGI CCWGG 1 cut(s) 254
PspN4I GGNNCC 2 cut(s) 253, 270
PspPI GGNCC 1 cut(s) 251
RsaI GTAC 1 cut(s) 352
RsaNI GTAC 1 cut(s) 351
SaqAI TTAA 3 cut(s) 198, 206, 345
SatI GCNGC 1 cut(s) 432
Sau96I GGNCC 1 cut(s) 251
ScrFI CCNGG 1 cut(s) 256
SduI GDGCHC 1 cut(s) 115
SetI ASST 7 cut(s) 35, 71, 112, 165, 241, 340, 352
SinI GGWCC 1 cut(s) 251
SmlI CTYRAG 2 cut(s) 79, 465
SmoI CTYRAG 2 cut(s) 79, 465
Sse9I AATT 6 cut(s) 19, 189, 218, 332, 375, 525
SsiI CCGC 1 cut(s) 105
StyD4I CCNGG 1 cut(s) 254
TaaI ACNGT 2 cut(s) 49, 368
TaqI TCGA 1 cut(s) 101
TasI AATT 6 cut(s) 19, 189, 218, 332, 375, 525
TfiI GAWTC 1 cut(s) 4
Tru1I TTAA 3 cut(s) 198, 206, 345
Tru9I TTAA 3 cut(s) 198, 206, 345
TseI GCWGC 1 cut(s) 431
TspDTI ATGAA 5 cut(s) 17, 45, 173, 212, 416
TspGWI ACGGA 1 cut(s) 183
VpaK11BI GGWCC 1 cut(s) 251
XagI CCTNNNNNAGG 1 cut(s) 345
XapI RAATTY 2 cut(s) 19, 189
XceI RCATGY 1 cut(s) 127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.