Rmu_sc0007633.1_g000010

Protein of unknown function (DUF 659)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007633.1
OG0000421
Physical Location & Seq
Reverse (-)
62412 .. 63053
642 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007633.1_g000010.1.cds

Sequence Viewer

Length: 642 bp
atgagcagcggaggaacacctcctattagttctagtgccgggtctgttaacgccggtgctagtagtggatatgctgatcctgaaaatgagaccattgatgataaagcatcattatggaaatttgtgaagaagattcaaaaaatgccaagtggaggaagttggaggtggcagtgcaatttttgcaaatcgtactacaatgggtcttatactagagttcgtggtcatttgttgaaagaaggaacagcaggggtggcagtttgcagcaaggctactcctcatgcatttactcaaatgtccaagttggtgagagaatgcaaggagagactaatgaatgcagcttctagacaagttcttctactatcatcaggacatcaaggggggagttccgccacaagtagctatgggatgagttatcatgcctatacacaagcacaaacaacaagtgatggtagaaagaagagggaaaaagctgctggtttagttgaaaaagccttccaaaactcaactagggagcaatgcgatagtgaggttgcaaggatgtactacactggtggcttatctttcaacctagctagaaatccacactatcggaactcttacattcatgcttctacccttccaggctacattccaccaggctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659

Protein Analysis

213

Amino Acids

23.13

Weight (kDa)

9.57

Isoelectric Point (pI)

42.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000421)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G08267
fragaria_vesca FvH4_2g14331 FvH4_2g16371 FvH4_2g26163 FvH4_3g42540 FvH4_4g02102 FvH4_4g12491 FvH4_4g35171 FvH4_5g06632 FvH4_5g06632 FvH4_5g06632 FvH4_5g08811 FvH4_5g08812 FvH4_5g23531 FvH4_6g10272 FvH4_6g40844 FvH4_7g16803 FvH4_7g16804
malus_domestica MD11G1099500.v1.1 MD17G1176800.v1.1
pyrus_communis pycom05g07840 pycom06g08730 pycom07g12010 pycom07g12020 pycom10g07270 pycom11g17470 pycom12g10610 pycom12g14240 pycom13g22040 pycom15g02440
rosa_chinensis RchiOBHm_Chr1g0371321 RchiOBHm_Chr2g0102701 RchiOBHm_Chr3g0465681 RchiOBHm_Chr4g0420941 RchiOBHm_Chr4g0434271 RchiOBHm_Chr4g0442721 RchiOBHm_Chr6g0262081 RchiOBHm_Chr6g0278171 RchiOBHm_Chr6g0294991 RchiOBHm_Chr6g0295001 RchiOBHm_Chr7g0205361 RchiOBHm_Chr7g0205371 RchiOBHm_Chr7g0223471
rosa_laevigata RLG00000005266
rosa_multiflora Rmu_sc0000493.1_g000033 Rmu_sc0000493.1_g000034 Rmu_sc0000507.1_g000007 Rmu_sc0000843.1_g000001 Rmu_sc0001075.1_g000033 Rmu_sc0002077.1_g000007 Rmu_sc0002077.1_g000008 Rmu_sc0002329.1_g000029 Rmu_sc0002539.1_g000077 Rmu_sc0002655.1_g000006 Rmu_sc0003127.1_g000020 Rmu_sc0003765.1_g000054 Rmu_sc0004368.1_g000023 Rmu_sc0004753.1_g000022 Rmu_sc0005297.1_g000014 Rmu_sc0007633.1_g000010 Rmu_sc0008164.1_g000005 Rmu_sc0008191.1_g000003 Rmu_sc0017900.1_g000005 Rmu_sc0022727.1_g000002
rosa_roxburghii Rroxscaffold_2G00079920 Rroxscaffold_3G00255890 Rroxscaffold_4G00295340 Rroxscaffold_4G00296360 Rroxscaffold_4G00299640 Rroxscaffold_6G00388210
rosa_rugosa Rorug02G0466700 Rorug04G0123200 Rorug05G0074800 Rorug07G0202900
rosa_samantha Rh1DG134700 Rh3CG159000 Rh4AG331000 Rh5AG521100 Rh5BG136400 Rh5DG127300 Rh5DG383100 Rh5DG386100 Rh5DG458000 Rh6CG450400 Rh7CG233800 Rh7DG407100
rosa_wichuraiana Rw1G004960 Rw1G005730 Rw1G006360 Rw1G017400 Rw2G013190 Rw2G022210 Rw2G029640 Rw5G020910 Rw5G036930 Rw6G016200 Rw7G018170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 9, 387
AclWI GGATC 1 cut(s) 71
AcsI RAATTY 1 cut(s) 119
AfaI GTAC 2 cut(s) 191, 542
AfiI CCNNNNNNNGG 1 cut(s) 152
AgsI TTSAA 4 cut(s) 137, 232, 485, 565
AjnI CCWGG 2 cut(s) 619, 634
AluBI AGCT 4 cut(s) 338, 399, 470, 572
AluI AGCT 4 cut(s) 338, 399, 470, 572
Alw26I GTCTC 2 cut(s) 83, 316
AlwI GGATC 1 cut(s) 71
ApeKI GCWGC 4 cut(s) 6, 261, 335, 470
ApoI RAATTY 1 cut(s) 119
AsuC2I CCSGG 1 cut(s) 40
AsuHPI GGTGA 1 cut(s) 316
BbvI GCAGC 4 cut(s) 18, 273, 347, 457
BccI CCATC 1 cut(s) 440
BciT130I CCWGG 2 cut(s) 621, 636
BcnI CCSGG 1 cut(s) 40
BcoDI GTCTC 2 cut(s) 83, 316
BfaI CTAG 7 cut(s) 33, 60, 210, 342, 507, 569, 573
BisI GCNGC 4 cut(s) 7, 262, 336, 471
BlsI GCNGC 4 cut(s) 8, 263, 337, 472
Bme1390I CCNGG 3 cut(s) 40, 621, 636
BmrFI CCNGG 3 cut(s) 40, 621, 636
BmsI GCATC 1 cut(s) 116
BpuMI CCSGG 1 cut(s) 40
BsaI GGTCTC 1 cut(s) 83
Bsc4I CCNNNNNNNGG 1 cut(s) 152
Bse118I RCCGGY 1 cut(s) 53
Bse1I ACTGG 1 cut(s) 553
Bse3DI GCAATG 1 cut(s) 521
BseBI CCWGG 2 cut(s) 621, 636
BseGI GGATG 2 cut(s) 411, 543
BseLI CCNNNNNNNGG 1 cut(s) 152
BseMI GCAATG 1 cut(s) 521
BseNI ACTGG 1 cut(s) 553
BseRI GAGGAG 1 cut(s) 264
BseXI GCAGC 4 cut(s) 18, 273, 347, 457
BsiSI CCGG 2 cut(s) 39, 54
BslI CCNNNNNNNGG 1 cut(s) 152
BsmAI GTCTC 2 cut(s) 83, 316
BsmI GAATGC 2 cut(s) 317, 337
Bso31I GGTCTC 1 cut(s) 83
Bsp143I GATC 1 cut(s) 76
BspACI CCGC 2 cut(s) 9, 387
BspPI GGATC 1 cut(s) 71
BspTNI GGTCTC 1 cut(s) 83
BsrDI GCAATG 1 cut(s) 521
BsrFI RCCGGY 1 cut(s) 53
BsrI ACTGG 1 cut(s) 553
BssAI RCCGGY 1 cut(s) 53
BssMI GATC 1 cut(s) 76
Bst2UI CCWGG 2 cut(s) 621, 636
Bst6I CTCTTC 1 cut(s) 452
BstAPI GCANNNNNTGC 1 cut(s) 180
BstF5I GGATG 2 cut(s) 411, 543
BstKTI GATC 1 cut(s) 79
BstMAI GTCTC 2 cut(s) 83, 316
BstMBI GATC 1 cut(s) 76
BstMWI GCNNNNNNNGC 2 cut(s) 180, 251
BstNI CCWGG 2 cut(s) 621, 636
BstSCI CCNGG 3 cut(s) 38, 619, 634
BstV1I GCAGC 4 cut(s) 18, 273, 347, 457
BtsCI GGATG 2 cut(s) 411, 543
BtsI GCAGTG 1 cut(s) 176
BtsIMutI CAGTG 2 cut(s) 176, 546
Cfr10I RCCGGY 1 cut(s) 53
Csp6I GTAC 2 cut(s) 190, 541
CviAII CATG 3 cut(s) 278, 416, 605
CviJI RGCY 9 cut(s) 269, 338, 399, 470, 491, 555, 572, 624, 639
CviKI_1 RGCY 9 cut(s) 269, 338, 399, 470, 491, 555, 572, 624, 639
CviQI GTAC 2 cut(s) 190, 541
DpnI GATC 1 cut(s) 78
DpnII GATC 1 cut(s) 76
Eam1104I CTCTTC 1 cut(s) 452
EarI CTCTTC 1 cut(s) 452
EciI GGCGGA 1 cut(s) 376
Eco31I GGTCTC 1 cut(s) 83
EcoRII CCWGG 2 cut(s) 619, 634
EcoT22I ATGCAT 1 cut(s) 283
FaeI CATG 3 cut(s) 281, 419, 608
FaiI YATR 8 cut(s) 72, 115, 207, 279, 402, 417, 423, 606
FatI CATG 3 cut(s) 277, 415, 604
Fnu4HI GCNGC 4 cut(s) 7, 262, 336, 471
FokI GGATG 2 cut(s) 418, 550
Fsp4HI GCNGC 4 cut(s) 7, 262, 336, 471
FspBI CTAG 7 cut(s) 33, 60, 210, 342, 507, 569, 573
GluI GCNGC 4 cut(s) 7, 262, 336, 471
HapII CCGG 2 cut(s) 39, 54
Hin1II CATG 3 cut(s) 281, 419, 608
HincII GTYRAC 1 cut(s) 49
HindII GTYRAC 1 cut(s) 49
HinfI GANTC 1 cut(s) 133
HpaI GTTAAC 1 cut(s) 49
HpaII CCGG 2 cut(s) 39, 54
HphI GGTGA 1 cut(s) 316
Hpy166II GTNNAC 1 cut(s) 49
Hpy188I TCNGA 1 cut(s) 591
Hpy188III TCNNGA 3 cut(s) 80, 342, 366
Hpy8I GTNNAC 1 cut(s) 49
HpyAV CCTTC 3 cut(s) 230, 502, 626
HpyCH4V TGCA 7 cut(s) 174, 183, 261, 281, 315, 335, 533
HpyF10VI GCNNNNNNNGC 2 cut(s) 180, 251
Hsp92II CATG 3 cut(s) 281, 419, 608
KspAI GTTAAC 1 cut(s) 49
Kzo9I GATC 1 cut(s) 76
LmnI GCTCC 1 cut(s) 511
Lsp1109I GCAGC 4 cut(s) 18, 273, 347, 457
LweI GCATC 1 cut(s) 116
MaeI CTAG 7 cut(s) 33, 60, 210, 342, 507, 569, 573
MalI GATC 1 cut(s) 78
MboI GATC 1 cut(s) 76
MboII GAAGA 4 cut(s) 139, 142, 344, 469
MluCI AATT 2 cut(s) 119, 175
MmeI TCCRAC 1 cut(s) 140
MnlI CCTC 7 cut(s) 5, 30, 146, 156, 285, 453, 520
Mph1103I ATGCAT 1 cut(s) 283
MseI TTAA 1 cut(s) 48
MslI CAYNNNNRTG 1 cut(s) 112
MspA1I CMGCKG 1 cut(s) 9
MspI CCGG 2 cut(s) 39, 54
MspR9I CCNGG 3 cut(s) 40, 621, 636
Mva1269I GAATGC 2 cut(s) 317, 337
MvaI CCWGG 2 cut(s) 621, 636
MwoI GCNNNNNNNGC 2 cut(s) 180, 251
NciI CCSGG 1 cut(s) 40
NdeII GATC 1 cut(s) 76
NlaIII CATG 3 cut(s) 281, 419, 608
NsiI ATGCAT 1 cut(s) 283
PctI GAATGC 2 cut(s) 317, 337
PfeI GAWTC 1 cut(s) 133
PkrI GCNGC 4 cut(s) 8, 263, 337, 472
Psp6I CCWGG 2 cut(s) 619, 634
PspGI CCWGG 2 cut(s) 619, 634
RsaI GTAC 2 cut(s) 191, 542
RsaNI GTAC 2 cut(s) 190, 541
RseI CAYNNNNRTG 1 cut(s) 112
SaqAI TTAA 1 cut(s) 48
SatI GCNGC 4 cut(s) 7, 262, 336, 471
Sau3AI GATC 1 cut(s) 76
ScrFI CCNGG 3 cut(s) 40, 621, 636
SetI ASST 8 cut(s) 22, 167, 340, 401, 472, 531, 570, 574
SfaNI GCATC 1 cut(s) 116
SgrAI CRCCGGYG 1 cut(s) 53
SmiMI CAYNNNNRTG 1 cut(s) 112
Sse9I AATT 2 cut(s) 119, 175
SsiI CCGC 2 cut(s) 9, 387
SspMI CTAG 7 cut(s) 33, 60, 210, 342, 507, 569, 573
StyD4I CCNGG 3 cut(s) 38, 619, 634
TasI AATT 2 cut(s) 119, 175
TatI WGTACW 1 cut(s) 540
TfiI GAWTC 1 cut(s) 133
Tru1I TTAA 1 cut(s) 48
Tru9I TTAA 1 cut(s) 48
TscAI CASTG 2 cut(s) 176, 553
TseI GCWGC 4 cut(s) 6, 261, 335, 470
TspDTI ATGAA 2 cut(s) 344, 593
TspRI CASTG 2 cut(s) 176, 553
XapI RAATTY 1 cut(s) 119
XbaI TCTAGA 1 cut(s) 341
XspI CTAG 7 cut(s) 33, 60, 210, 342, 507, 569, 573
Zsp2I ATGCAT 1 cut(s) 283
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.