pycom05g07840

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0000421
Physical Location & Seq
Forward (+)
10651232 .. 10651802
571 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g07840.1

Sequence Viewer

Length: 450 bp
ATGGGGAACAAGCATATAATGTGTGTTCATTTAAGTATTCGACAAGCGGGTCTGGGCGGGTGCCTAGGCAGTCTAGGTGGGCATCTCAGTAGGTCTATGGGCCCTTTCTTAATTTTCAGACGCCTAGGCATTAATCGGGGCGGTGACCAACCGCCTAGGATTTTTAGAACAATGTGTGAAATTGGACCTATGTTCTTGAAGGCGGTTAGTTGTGAAGGTGAGACAAAGAATGCTCAATTCATTGCTAATTTGCTCGATCAGTGCATTCATGAGATTGGACCACAATATGTAGTTCAAGTAATCACAATCAATGCAAGTTCTTGCAAAACAGGAAAAATAACAGAGGCCAATTATAGATACATATTTTGGACTCCATGTGTAGTACATACACTAAATCTAGCTTTGAATAACATATGCACACTGACGGCAAGTCTATCTAACAATGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT

Protein Analysis

150

Amino Acids

16.31

Weight (kDa)

9.04

Isoelectric Point (pI)

36.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF659 PF04937 57 - 142 2e-25 Domain of unknown function (DUF659)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000421)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G08267
fragaria_vesca FvH4_2g14331 FvH4_2g16371 FvH4_2g26163 FvH4_3g42540 FvH4_4g02102 FvH4_4g12491 FvH4_4g35171 FvH4_5g06632 FvH4_5g06632 FvH4_5g06632 FvH4_5g08811 FvH4_5g08812 FvH4_5g23531 FvH4_6g10272 FvH4_6g40844 FvH4_7g16803 FvH4_7g16804
malus_domestica MD11G1099500.v1.1 MD17G1176800.v1.1
pyrus_communis pycom05g07840 pycom06g08730 pycom07g12010 pycom07g12020 pycom10g07270 pycom11g17470 pycom12g10610 pycom12g14240 pycom13g22040 pycom15g02440
rosa_chinensis RchiOBHm_Chr1g0371321 RchiOBHm_Chr2g0102701 RchiOBHm_Chr3g0465681 RchiOBHm_Chr4g0420941 RchiOBHm_Chr4g0434271 RchiOBHm_Chr4g0442721 RchiOBHm_Chr6g0262081 RchiOBHm_Chr6g0278171 RchiOBHm_Chr6g0294991 RchiOBHm_Chr6g0295001 RchiOBHm_Chr7g0205361 RchiOBHm_Chr7g0205371 RchiOBHm_Chr7g0223471
rosa_laevigata RLG00000005266
rosa_multiflora Rmu_sc0000493.1_g000033 Rmu_sc0000493.1_g000034 Rmu_sc0000507.1_g000007 Rmu_sc0000843.1_g000001 Rmu_sc0001075.1_g000033 Rmu_sc0002077.1_g000007 Rmu_sc0002077.1_g000008 Rmu_sc0002329.1_g000029 Rmu_sc0002539.1_g000077 Rmu_sc0002655.1_g000006 Rmu_sc0003127.1_g000020 Rmu_sc0003765.1_g000054 Rmu_sc0004368.1_g000023 Rmu_sc0004753.1_g000022 Rmu_sc0005297.1_g000014 Rmu_sc0007633.1_g000010 Rmu_sc0008164.1_g000005 Rmu_sc0008191.1_g000003 Rmu_sc0017900.1_g000005 Rmu_sc0022727.1_g000002
rosa_roxburghii Rroxscaffold_2G00079920 Rroxscaffold_3G00255890 Rroxscaffold_4G00295340 Rroxscaffold_4G00296360 Rroxscaffold_4G00299640 Rroxscaffold_6G00388210
rosa_rugosa Rorug02G0466700 Rorug04G0123200 Rorug05G0074800 Rorug07G0202900
rosa_samantha Rh1DG134700 Rh3CG159000 Rh4AG331000 Rh5AG521100 Rh5BG136400 Rh5DG127300 Rh5DG383100 Rh5DG386100 Rh5DG458000 Rh6CG450400 Rh7CG233800 Rh7DG407100
rosa_wichuraiana Rw1G004960 Rw1G005730 Rw1G006360 Rw1G017400 Rw2G013190 Rw2G022210 Rw2G029640 Rw5G020910 Rw5G036930 Rw6G016200 Rw7G018170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 48
AccB1I GGYRCC 1 cut(s) 60
AciI CCGC 5 cut(s) 47, 57, 141, 152, 203
AcyI GRCGYC 1 cut(s) 121
AfaI GTAC 1 cut(s) 384
AgsI TTSAA 3 cut(s) 199, 296, 406
AhdI GACNNNNNGTC 1 cut(s) 429
AluBI AGCT 1 cut(s) 401
AluI AGCT 1 cut(s) 401
Alw26I GTCTC 1 cut(s) 215
AoxI GGCC 2 cut(s) 100, 345
ApaI GGGCCC 1 cut(s) 104
AseI ATTAAT 1 cut(s) 132
AspA2I CCTAGG 3 cut(s) 64, 124, 155
AspS9I GGNCC 4 cut(s) 100, 101, 185, 278
AsuHPI GGTGA 2 cut(s) 155, 230
AvaII GGWCC 2 cut(s) 185, 278
AvrII CCTAGG 3 cut(s) 64, 124, 155
BaeGI GKGCMC 1 cut(s) 104
BanI GGYRCC 1 cut(s) 60
BanII GRGCYC 1 cut(s) 104
BceAI ACGGC 1 cut(s) 441
BcoDI GTCTC 1 cut(s) 215
BfaI CTAG 5 cut(s) 65, 74, 125, 156, 398
BlnI CCTAGG 3 cut(s) 64, 124, 155
Bme18I GGWCC 2 cut(s) 185, 278
BmeRI GACNNNNNGTC 1 cut(s) 429
BmgT120I GGNCC 4 cut(s) 100, 101, 185, 278
BmiI GGNNCC 2 cut(s) 62, 102
BmsI GCATC 1 cut(s) 91
BsaHI GRCGYC 1 cut(s) 121
BsaJI CCNNGG 3 cut(s) 64, 124, 155
Bse3DI GCAATG 1 cut(s) 240
BseDI CCNNGG 3 cut(s) 64, 124, 155
BseMI GCAATG 1 cut(s) 240
BseMII CTCAG 1 cut(s) 100
BseSI GKGCMC 1 cut(s) 104
BshFI GGCC 2 cut(s) 102, 347
BshNI GGYRCC 1 cut(s) 60
BsmAI GTCTC 1 cut(s) 215
BsmI GAATGC 2 cut(s) 235, 264
BsnI GGCC 2 cut(s) 102, 347
Bsp120I GGGCCC 1 cut(s) 100
Bsp1286I GDGCHC 1 cut(s) 104
Bsp143I GATC 1 cut(s) 256
BspACI CCGC 5 cut(s) 47, 57, 141, 152, 203
BspANI GGCC 2 cut(s) 102, 347
BspCNI CTCAG 1 cut(s) 99
BspHI TCATGA 1 cut(s) 268
BspLI GGNNCC 2 cut(s) 62, 102
BspT107I GGYRCC 1 cut(s) 60
BsrDI GCAATG 1 cut(s) 240
BssECI CCNNGG 3 cut(s) 64, 124, 155
BssMI GATC 1 cut(s) 256
BssNI GRCGYC 1 cut(s) 121
BssT1I CCWWGG 3 cut(s) 64, 124, 155
BstACI GRCGYC 1 cut(s) 121
BstDEI CTNAG 1 cut(s) 86
BstEII GGTNACC 1 cut(s) 143
BstKTI GATC 1 cut(s) 259
BstMAI GTCTC 1 cut(s) 215
BstMBI GATC 1 cut(s) 256
BstPI GGTNACC 1 cut(s) 143
BstSLI GKGCMC 1 cut(s) 104
BsuRI GGCC 2 cut(s) 102, 347
BtsIMutI CAGTG 2 cut(s) 266, 419
CciI TCATGA 1 cut(s) 268
Cfr13I GGNCC 4 cut(s) 100, 101, 185, 278
CseI GACGC 1 cut(s) 129
Csp6I GTAC 1 cut(s) 383
CviAII CATG 2 cut(s) 269, 375
CviJI RGCY 3 cut(s) 102, 347, 401
CviKI_1 RGCY 3 cut(s) 102, 347, 401
CviQI GTAC 1 cut(s) 383
DdeI CTNAG 1 cut(s) 86
DpnI GATC 1 cut(s) 258
DpnII GATC 1 cut(s) 256
DrdI GACNNNNNNGTC 1 cut(s) 48
DriI GACNNNNNGTC 1 cut(s) 429
DseDI GACNNNNNNGTC 1 cut(s) 48
Eam1105I GACNNNNNGTC 1 cut(s) 429
Eco130I CCWWGG 3 cut(s) 64, 124, 155
Eco24I GRGCYC 1 cut(s) 104
Eco47I GGWCC 2 cut(s) 185, 278
Eco91I GGTNACC 1 cut(s) 143
EcoO109I RGGNCCY 1 cut(s) 101
EcoO65I GGTNACC 1 cut(s) 143
EcoT14I CCWWGG 3 cut(s) 64, 124, 155
EcoT38I GRGCYC 1 cut(s) 104
ErhI CCWWGG 3 cut(s) 64, 124, 155
FaeI CATG 2 cut(s) 272, 378
FatI CATG 2 cut(s) 268, 374
FauI CCCGC 2 cut(s) 40, 50
FauNDI CATATG 1 cut(s) 413
FriOI GRGCYC 1 cut(s) 104
FspBI CTAG 5 cut(s) 65, 74, 125, 156, 398
HaeIII GGCC 2 cut(s) 102, 347
HgaI GACGC 1 cut(s) 129
Hin1I GRCGYC 1 cut(s) 121
Hin1II CATG 2 cut(s) 272, 378
HinfI GANTC 1 cut(s) 370
HphI GGTGA 2 cut(s) 155, 230
Hpy188I TCNGA 1 cut(s) 119
Hpy188III TCNNGA 2 cut(s) 196, 269
HpyAV CCTTC 2 cut(s) 193, 209
HpyCH4V TGCA 4 cut(s) 264, 314, 324, 417
HpyF3I CTNAG 1 cut(s) 86
Hsp92I GRCGYC 1 cut(s) 121
Hsp92II CATG 2 cut(s) 272, 378
Kzo9I GATC 1 cut(s) 256
LpnPI CCDG 2 cut(s) 38, 315
LweI GCATC 1 cut(s) 91
MaeI CTAG 5 cut(s) 65, 74, 125, 156, 398
MaeIII GTNAC 1 cut(s) 143
MalI GATC 1 cut(s) 258
MboI GATC 1 cut(s) 256
MhlI GDGCHC 1 cut(s) 104
MluCI AATT 5 cut(s) 111, 180, 236, 247, 349
MlyI GAGTC 1 cut(s) 364
MnlI CCTC 1 cut(s) 337
MseI TTAA 3 cut(s) 32, 110, 132
Mva1269I GAATGC 2 cut(s) 235, 264
NdeI CATATG 1 cut(s) 413
NdeII GATC 1 cut(s) 256
NlaIII CATG 2 cut(s) 272, 378
NlaIV GGNNCC 2 cut(s) 62, 102
NmuCI GTSAC 1 cut(s) 143
PagI TCATGA 1 cut(s) 268
PctI GAATGC 2 cut(s) 235, 264
PleI GAGTC 1 cut(s) 364
PpsI GAGTC 1 cut(s) 364
PshBI ATTAAT 1 cut(s) 132
PspEI GGTNACC 1 cut(s) 143
PspN4I GGNNCC 2 cut(s) 62, 102
PspOMI GGGCCC 1 cut(s) 100
PspPI GGNCC 4 cut(s) 100, 101, 185, 278
RsaI GTAC 1 cut(s) 384
RsaNI GTAC 1 cut(s) 383
SaqAI TTAA 3 cut(s) 32, 110, 132
Sau3AI GATC 1 cut(s) 256
Sau96I GGNCC 4 cut(s) 100, 101, 185, 278
SchI GAGTC 1 cut(s) 364
SduI GDGCHC 1 cut(s) 104
SetI ASST 5 cut(s) 79, 95, 190, 220, 403
SfaNI GCATC 1 cut(s) 91
SinI GGWCC 2 cut(s) 185, 278
Sse9I AATT 5 cut(s) 111, 180, 236, 247, 349
SsiI CCGC 5 cut(s) 47, 57, 141, 152, 203
SspMI CTAG 5 cut(s) 65, 74, 125, 156, 398
StyI CCWWGG 3 cut(s) 64, 124, 155
TaqI TCGA 2 cut(s) 40, 255
TasI AATT 5 cut(s) 111, 180, 236, 247, 349
TatI WGTACW 1 cut(s) 382
Tru1I TTAA 3 cut(s) 32, 110, 132
Tru9I TTAA 3 cut(s) 32, 110, 132
TscAI CASTG 2 cut(s) 266, 426
TseFI GTSAC 1 cut(s) 143
Tsp45I GTSAC 1 cut(s) 143
TspDTI ATGAA 3 cut(s) 17, 229, 257
TspRI CASTG 2 cut(s) 266, 426
VpaK11BI GGWCC 2 cut(s) 185, 278
VspI ATTAAT 1 cut(s) 132
XmaJI CCTAGG 3 cut(s) 64, 124, 155
XspI CTAG 5 cut(s) 65, 74, 125, 156, 398
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.